Guide to the Human Genome
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Name: POP1 Sequence: fasta or formatted (1024aa) NCBI GI: 225007650
Description:

processing of precursor 1

Referenced in:

RNases and RNA Stability

Other entries for this name:
alt mRNA [1024aa] processing of precursor 1
alt mRNA [1024aa] processing of precursor 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         67           2
 C cysteine            2.9         30           2
 D aspartate           3.5         36           2
 E glutamate           7.5         77           3
 F phenylalanine       2.3         24           1
 G glycine             7.2         74           2
 H histidine           3.3         34           2
 I isoleucine          4.6         47           3
 K lysine              8.0         82           3
 L leucine             9.0         92           3
 M methionine          2.1         21           1
 N asparagine          2.6         27           1
 P proline             7.3         75           2
 Q glutamine           5.1         52           2
 R arginine            6.9         71           3
 S serine              7.9         81           3
 T threonine           4.7         48           2
 V valine              4.9         50           1
 W tryptophan          2.1         21           2
 Y tyrosine            1.5         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   processing of precursor 1 
POP1                  1.000   processing of precursor 1 
POP1                  1.000   processing of precursor 1 
ALS2CR4               0.005   amyotrophic lateral sclerosis 2 (juvenile) chromoso...
ALS2CR4               0.005   amyotrophic lateral sclerosis 2 (juvenile) chromoso...
ATXN7L2               0.005   ataxin 7-like 2 
TRH                   0.004   thyrotropin-releasing hormone 
GLTSCR1               0.004   glioma tumor suppressor candidate region gene 1 [Ho...
AP3D1                 0.004   adaptor-related protein complex 3, delta 1 subunit ...
LOC728636             0.004   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC647042             0.004   PREDICTED: hypothetical protein isoform 2 
LOC647042             0.004   PREDICTED: hypothetical protein isoform 1 
LOC440295             0.004   hypothetical protein LOC440295 
RBBP6                 0.004   retinoblastoma-binding protein 6 isoform 2 
RBBP6                 0.004   retinoblastoma-binding protein 6 isoform 1 
MAGEA6                0.003   melanoma antigen family A, 6 
MAGEA6                0.003   melanoma antigen family A, 6 
MAGEA3                0.003   melanoma antigen family A, 3 
PHLDB2                0.003   pleckstrin homology-like domain, family B, member 2...
PHLDB2                0.003   pleckstrin homology-like domain, family B, member 2...
PHLDB2                0.003   pleckstrin homology-like domain, family B, member 2...
PHLDB2                0.003   pleckstrin homology-like domain, family B, member 2 ...
RIMBP3B               0.003   RIMS binding protein 3B 
RIMBP3C               0.003   RIMS binding protein 3C 
AKAP13                0.003   A-kinase anchor protein 13 isoform 1 
AKAP13                0.003   A-kinase anchor protein 13 isoform 3 
AKAP13                0.003   A-kinase anchor protein 13 isoform 2 
AZI1                  0.003   5-azacytidine induced 1 isoform b 
AZI1                  0.003   5-azacytidine induced 1 isoform a 
TSC1                  0.003   tuberous sclerosis 1 protein isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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