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Search of human proteins with 10140847
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|10140847 homeobox A2 [Homo sapiens]
(376 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|10140847 homeobox A2 [Homo sapiens] 761 0.0
gi|4504465 homeobox B2 [Homo sapiens] 304 1e-82
gi|19923391 homeobox D3 [Homo sapiens] 130 2e-30
gi|24497513 homeobox A3 isoform a [Homo sapiens] 122 5e-28
gi|13562112 homeobox A3 isoform a [Homo sapiens] 122 5e-28
gi|84570137 homeobox B3 [Homo sapiens] 115 6e-26
gi|24497515 homeobox A3 isoform b [Homo sapiens] 105 5e-23
gi|18959212 GS homeobox 2 [Homo sapiens] 100 2e-21
gi|24497517 homeobox A5 [Homo sapiens] 100 3e-21
gi|23397672 homeobox D4 [Homo sapiens] 99 8e-21
gi|33457326 GS homeobox 1 [Homo sapiens] 99 8e-21
gi|13273315 homeobox B4 [Homo sapiens] 97 2e-20
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 97 3e-20
gi|148613882 homeobox A4 [Homo sapiens] 97 3e-20
gi|24497538 homeobox C4 [Homo sapiens] 96 4e-20
gi|24497540 homeobox C4 [Homo sapiens] 96 4e-20
gi|4504469 homeobox B5 [Homo sapiens] 96 7e-20
gi|11321638 homeobox C5 [Homo sapiens] 93 4e-19
gi|24497544 homeobox C6 isoform 2 [Homo sapiens] 93 4e-19
gi|4758554 homeobox C6 isoform 1 [Homo sapiens] 93 4e-19
gi|24497526 homeobox B1 [Homo sapiens] 92 8e-19
gi|85068580 homeobox B7 [Homo sapiens] 91 1e-18
gi|13489077 homeobox A6 [Homo sapiens] 90 3e-18
gi|13375632 homeobox D1 [Homo sapiens] 90 4e-18
gi|5031761 homeobox A1 isoform a [Homo sapiens] 90 4e-18
gi|121114296 caudal type homeobox 1 [Homo sapiens] 90 4e-18
gi|24497556 homeobox A7 [Homo sapiens] 89 6e-18
gi|23503237 homeobox B6 [Homo sapiens] 89 6e-18
gi|12056969 homeobox C8 [Homo sapiens] 88 1e-17
gi|89257348 homeo box HB9 [Homo sapiens] 87 2e-17
>gi|10140847 homeobox A2 [Homo sapiens]
Length = 376
Score = 761 bits (1965), Expect = 0.0
Identities = 376/376 (100%), Positives = 376/376 (100%)
Query: 1 MNYEFEREIGFINSQPSLAECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLN 60
MNYEFEREIGFINSQPSLAECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLN
Sbjct: 1 MNYEFEREIGFINSQPSLAECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLN 60
Query: 61 PGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAA 120
PGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAA
Sbjct: 61 PGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAA 120
Query: 121 ATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL 180
ATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL
Sbjct: 121 ATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL 180
Query: 181 DLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKTLFEQALSVS 240
DLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKTLFEQALSVS
Sbjct: 181 DLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKTLFEQALSVS 240
Query: 241 GALLEREGYTFQQNALSQQQAPNGHNGDSQSFPVSPLTSNEKNLKHFQHQSPTVPNCLST 300
GALLEREGYTFQQNALSQQQAPNGHNGDSQSFPVSPLTSNEKNLKHFQHQSPTVPNCLST
Sbjct: 241 GALLEREGYTFQQNALSQQQAPNGHNGDSQSFPVSPLTSNEKNLKHFQHQSPTVPNCLST 300
Query: 301 MGQNCGAGLNNDSPEALEVPSLQDFSVFSTDSCLQLSDAVSPSLPGSLDSPVDISADSLD 360
MGQNCGAGLNNDSPEALEVPSLQDFSVFSTDSCLQLSDAVSPSLPGSLDSPVDISADSLD
Sbjct: 301 MGQNCGAGLNNDSPEALEVPSLQDFSVFSTDSCLQLSDAVSPSLPGSLDSPVDISADSLD 360
Query: 361 FFTDTLTTIDLQHLNY 376
FFTDTLTTIDLQHLNY
Sbjct: 361 FFTDTLTTIDLQHLNY 376
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 304 bits (778), Expect = 1e-82
Identities = 191/383 (49%), Positives = 222/383 (57%), Gaps = 40/383 (10%)
Query: 1 MNYEFEREIGFINSQPSLAECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLN 60
MN+EFEREIGFINSQPSLAECLTSFP V +TFQ+SSIK STL PPPFEQT PSL
Sbjct: 1 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPP---PPPFEQTFPSLQ 57
Query: 61 PGSHP--RHGAGGRPKPSPAGSRGSPVPAGALQP-PEYPWMKEKKAAKKTALLPAAAAAA 117
PG+ R + R + PA P P A P PE+PWMKEKK+AKK + + + A
Sbjct: 58 PGASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPA 117
Query: 118 TAAATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIA 177
+A S + L + + GGG+RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIA
Sbjct: 118 ASAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIA 177
Query: 178 ALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCK-SLEDSEKVEEDEEEKTLFEQA 236
ALLDLTERQVKVWFQNRRMKHKRQTQ +E + E C +LED E E A
Sbjct: 178 ALLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALEDICDPAE--------EPA 229
Query: 237 LSVSGALLEREGYTFQQNALSQQQAPNGHNGDSQSFPVSPLTSNEKNLKHFQHQSPTVPN 296
S G R + + + P + D + V + + P
Sbjct: 230 ASPGGPSASRAAW--EACCHPPEVVPGALSADPRPLAV-----------RLEGAGASSPG 276
Query: 297 CLSTMGQNCGAGLNNDSPEALEV-------PSLQDFSVFSTDSCLQLSDAVSPSLPGSLD 349
C GAG P +V P L D + F+ DSCLQLS +SPSL GSLD
Sbjct: 277 CALR-----GAGGLEPGPLPEDVFSGRQDSPFLPDLNFFAADSCLQLSGGLSPSLQGSLD 331
Query: 350 SPVDISADSLDFFTDTLTTIDLQ 372
SPV S + LDFFT TL IDLQ
Sbjct: 332 SPVPFSEEELDFFTSTLCAIDLQ 354
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 130 bits (327), Expect = 2e-30
Identities = 69/157 (43%), Positives = 90/157 (57%), Gaps = 19/157 (12%)
Query: 49 PPPFEQTIPSLNPGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTA 108
PPP T+P S P + GG P P G + + + +PWMKE + K
Sbjct: 119 PPPPPPTLPP----SSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQK 174
Query: 109 LLPAAAAAATAAATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYL 168
+C + ES E G S+R+RTAYT+ QL+ELEKEFHFN+YL
Sbjct: 175 ---------------NSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYL 219
Query: 169 CRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCK 205
CRPRRVE+A LL+LTERQ+K+WFQNRRMK+K+ + K
Sbjct: 220 CRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAK 256
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 122 bits (306), Expect = 5e-28
Identities = 75/200 (37%), Positives = 103/200 (51%), Gaps = 31/200 (15%)
Query: 31 TFQSSSIKTSTLSHSTLIPPPFEQTIPSLNPGSH----PRHGAGGRPKPS----PAGSRG 82
T + + +L L PPP + P+ P P P PS P +
Sbjct: 74 TLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASN 133
Query: 83 SPVPAGALQPPE----------YPWMKEKKAAKKTALLPAAAAAATAAATGPACLSHKES 132
+P PA A + P +PWMKE + K +++++G +C K
Sbjct: 134 NPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQK--------TSSSSSGESCAGDK-- 183
Query: 133 LEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQ 192
+ S+R RTAYT+ QL+ELEKEFHFN+YLCRPRRVE+A LL+LTERQ+K+WFQ
Sbjct: 184 ---SPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQ 240
Query: 193 NRRMKHKRQTQCKENQNSEG 212
NRRMK+K+ + K S G
Sbjct: 241 NRRMKYKKDQKGKGMLTSSG 260
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 122 bits (306), Expect = 5e-28
Identities = 75/200 (37%), Positives = 103/200 (51%), Gaps = 31/200 (15%)
Query: 31 TFQSSSIKTSTLSHSTLIPPPFEQTIPSLNPGSH----PRHGAGGRPKPS----PAGSRG 82
T + + +L L PPP + P+ P P P PS P +
Sbjct: 74 TLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASN 133
Query: 83 SPVPAGALQPPE----------YPWMKEKKAAKKTALLPAAAAAATAAATGPACLSHKES 132
+P PA A + P +PWMKE + K +++++G +C K
Sbjct: 134 NPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQK--------TSSSSSGESCAGDK-- 183
Query: 133 LEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQ 192
+ S+R RTAYT+ QL+ELEKEFHFN+YLCRPRRVE+A LL+LTERQ+K+WFQ
Sbjct: 184 ---SPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQ 240
Query: 193 NRRMKHKRQTQCKENQNSEG 212
NRRMK+K+ + K S G
Sbjct: 241 NRRMKYKKDQKGKGMLTSSG 260
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 115 bits (288), Expect = 6e-26
Identities = 66/166 (39%), Positives = 84/166 (50%), Gaps = 10/166 (6%)
Query: 57 PSLNPGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAA 116
PS P S + + G + P L +PWMKE + K A
Sbjct: 92 PSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESRQTSKLKNNSPGTAE 151
Query: 117 ATAAATGPACLSHKESLEIADGSGGG----------SRRLRTAYTNTQLLELEKEFHFNK 166
G G GGG S+R RTAYT+ QL+ELEKEFHFN+
Sbjct: 152 GCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNR 211
Query: 167 YLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEG 212
YLCRPRRVE+A LL+L+ERQ+K+WFQNRRMK+K+ + K +S G
Sbjct: 212 YLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSG 257
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 105 bits (263), Expect = 5e-23
Identities = 51/95 (53%), Positives = 69/95 (72%), Gaps = 5/95 (5%)
Query: 118 TAAATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIA 177
+++++G +C K + S+R RTAYT+ QL+ELEKEFHFN+YLCRPRRVE+A
Sbjct: 13 SSSSSGESCAGDK-----SPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMA 67
Query: 178 ALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEG 212
LL+LTERQ+K+WFQNRRMK+K+ + K S G
Sbjct: 68 NLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSG 102
>gi|18959212 GS homeobox 2 [Homo sapiens]
Length = 304
Score = 100 bits (249), Expect = 2e-21
Identities = 62/144 (43%), Positives = 85/144 (59%), Gaps = 24/144 (16%)
Query: 112 AAAAAATAAATGPACLSHKE---------SLEIADG------SGGGS--------RRLRT 148
AAAAAA AAA A L H + + +AD + GGS +R+RT
Sbjct: 148 AAAAAAAAAAAAAAALGHPQHHAPVCTATTYNVADPRRFHCLTMGGSDASQVPNGKRMRT 207
Query: 149 AYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENQ 208
A+T+TQLLELE+EF N YL R RR+EIA L+L+E+QVK+WFQNRR+KHK++ + + +
Sbjct: 208 AFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKGTQ-R 266
Query: 209 NSEGKCKSLEDSEKVEEDEEEKTL 232
NS CK + E+E +L
Sbjct: 267 NSHAGCKCVGSQVHYARSEDEDSL 290
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 100 bits (248), Expect = 3e-21
Identities = 68/175 (38%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 40 STLSHSTLIPPPFEQTIPSLNPGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPPEYPWMK 99
+T +HS P P + + +PGS HG K S + S G+ AG+ +
Sbjct: 90 ATSTHSPQ-PDPLPCSAVAPSPGSDSHHGG----KNSLSNSSGASADAGSTHISSREGVG 144
Query: 100 EKKAAKKTALLPAAAAAATAAA-------TGPACLSHKESLEIADGSGGG--SRRLRTAY 150
A++ A PA++ A+A + P L I+ + GG +R RTAY
Sbjct: 145 TASGAEEDA--PASSEQASAQSEPSPAPPAQPQIYPWMRKLHISHDNIGGPEGKRARTAY 202
Query: 151 TNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCK 205
T Q LELEKEFHFN+YL R RR+EIA L L+ERQ+K+WFQNRRMK K+ + K
Sbjct: 203 TRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLK 257
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 98.6 bits (244), Expect = 8e-21
Identities = 64/160 (40%), Positives = 84/160 (52%), Gaps = 16/160 (10%)
Query: 61 PGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAA 120
PG H + A G P P+P +P+P P K+ TAL A
Sbjct: 85 PGGH--YAAPGEPCPAPPAPPPAPLPGARAYSQSDP----KQPPSGTALKQPAVVYPWMK 138
Query: 121 ATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL 180
H S+ + +GG +R RTAYT Q+LELEKEFHFN+YL R RR+EIA L
Sbjct: 139 KV------HVNSVN-PNYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTL 191
Query: 181 DLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCKSLEDS 220
L+ERQ+K+WFQNRRMK K+ + N++G+ S S
Sbjct: 192 CLSERQIKIWFQNRRMKWKKDHKL---PNTKGRSSSSSSS 228
>gi|33457326 GS homeobox 1 [Homo sapiens]
Length = 264
Score = 98.6 bits (244), Expect = 8e-21
Identities = 68/215 (31%), Positives = 101/215 (46%), Gaps = 36/215 (16%)
Query: 48 IPPPFEQTIPSLNPGSHPRHGAG----------GRPKPSPAGSRGSPVPAGALQPPEYPW 97
+PPP + L+PG+ AG P G P+ + P +
Sbjct: 33 VPPP--HALHGLSPGACHARKAGLLCVCPLCVTASQLHGPPGPPALPLLKASFPPFGSQY 90
Query: 98 MKEKKAAKKTALLPAAAAAATAAATGPACLS-----------HKESLEIADGSGGGSRRL 146
+ +A+ P A AAA A H S++ + S+R+
Sbjct: 91 CHAPLGRQHSAVSPGVAHGPAAAAAAAALYQTSYPLPDPRQFHCISVDSSSNQLPSSKRM 150
Query: 147 RTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKE 206
RTA+T+TQLLELE+EF N YL R RR+EIA L+L+E+QVK+WFQNRR+KHK++ +
Sbjct: 151 RTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKGSN 210
Query: 207 NQNSEG-------------KCKSLEDSEKVEEDEE 228
++ G KC SL ++ E+D+E
Sbjct: 211 HRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDDDE 245
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 97.1 bits (240), Expect = 2e-20
Identities = 63/160 (39%), Positives = 82/160 (51%), Gaps = 23/160 (14%)
Query: 49 PPPFEQTIPSLNPGSHPRHGAGGRPKPSPAGSR----GSPVPAGALQPPEYPWMKEKKAA 104
PPP P PG PR P P PAG+ G A + PP P +
Sbjct: 75 PPPPPPPPPPPPPGLSPR-----APAPPPAGALLPEPGQRCEAVSSSPPPPPCAQN---- 125
Query: 105 KKTALLPAAAAAATAAATGPACLSHKESLEIA----DGSGGGSRRLRTAYTNTQLLELEK 160
P + + +A P + ++ + +GG +R RTAYT Q+LELEK
Sbjct: 126 ------PLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEK 179
Query: 161 EFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKR 200
EFH+N+YL R RRVEIA L L+ERQ+K+WFQNRRMK K+
Sbjct: 180 EFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKK 219
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 96.7 bits (239), Expect = 3e-20
Identities = 59/138 (42%), Positives = 71/138 (51%), Gaps = 27/138 (19%)
Query: 73 PKPSPAGSRGSPVPAGALQPPE-----YPWMKEKKAAKKTALLPAAAAAATAAATGPACL 127
P P PAG G L+ P +PWMK KA A AA
Sbjct: 93 PHP-PAGPFPEGAEPGVLEEPNRVQLPFPWMKSTKAHAWKGQWAGGAYAAEPEE------ 145
Query: 128 SHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQV 187
++R RTAYT QLLELEKEF FNKY+ RPRRVE+A +L+LTER +
Sbjct: 146 ---------------NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHI 190
Query: 188 KVWFQNRRMKHKRQTQCK 205
K+WFQNRRMK K++ K
Sbjct: 191 KIWFQNRRMKWKKEEDKK 208
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 96.7 bits (239), Expect = 3e-20
Identities = 64/164 (39%), Positives = 80/164 (48%), Gaps = 42/164 (25%)
Query: 48 IPPPFEQTIPSLNPGSHPRHGAGGRPKPS-PAGSRG----------SPVPAGALQPPEYP 96
+PPP + P P + PR P PAG SP+ +P YP
Sbjct: 140 LPPPLQ---PRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLADKSPLGLKGKEPVVYP 196
Query: 97 WMKEKKAAKKTALLPAAAAAATAAATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLL 156
WMK+ +A P+ +GG +R RTAYT Q+L
Sbjct: 197 WMKK----------------IHVSAVNPSY------------NGGEPKRSRTAYTRQQVL 228
Query: 157 ELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKR 200
ELEKEFHFN+YL R RR+EIA L L+ERQVK+WFQNRRMK K+
Sbjct: 229 ELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKK 272
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 96.3 bits (238), Expect = 4e-20
Identities = 57/140 (40%), Positives = 74/140 (52%), Gaps = 32/140 (22%)
Query: 65 PRHGAGGRPKPSPAG----SRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAA 120
P GA P P+P + P A + QP YPWMK+
Sbjct: 102 PLSGASASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKK-------------------- 141
Query: 121 ATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL 180
H ++ + +GG +R RTAYT Q+LELEKEFH+N+YL R RR+EIA L
Sbjct: 142 -------IHVSTVN-PNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSL 193
Query: 181 DLTERQVKVWFQNRRMKHKR 200
L+ERQ+K+WFQNRRMK K+
Sbjct: 194 CLSERQIKIWFQNRRMKWKK 213
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 96.3 bits (238), Expect = 4e-20
Identities = 57/140 (40%), Positives = 74/140 (52%), Gaps = 32/140 (22%)
Query: 65 PRHGAGGRPKPSPAG----SRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAA 120
P GA P P+P + P A + QP YPWMK+
Sbjct: 102 PLSGASASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKK-------------------- 141
Query: 121 ATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL 180
H ++ + +GG +R RTAYT Q+LELEKEFH+N+YL R RR+EIA L
Sbjct: 142 -------IHVSTVN-PNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSL 193
Query: 181 DLTERQVKVWFQNRRMKHKR 200
L+ERQ+K+WFQNRRMK K+
Sbjct: 194 CLSERQIKIWFQNRRMKWKK 213
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 95.5 bits (236), Expect = 7e-20
Identities = 62/160 (38%), Positives = 80/160 (50%), Gaps = 9/160 (5%)
Query: 54 QTIPSLNPGSHPRHGAGGRPKPSPAGSRGSPV-----PAGALQPPEYPWMKEKKAAKKTA 108
+++P N SH + P + S A A PE + +
Sbjct: 98 ESLPCTNGDSHGAKPSASSPSDQATSASSSANFTEIDEASASSEPEEA-ASQLSSPSLAR 156
Query: 109 LLPAAAAAATAAATG--PACLSHKESLEIA-DGSGGGSRRLRTAYTNTQLLELEKEFHFN 165
P A +TAA G P L I+ D +G +R RTAYT Q LELEKEFHFN
Sbjct: 157 AQPEPMATSTAAPEGQTPQIFPWMRKLHISHDMTGPDGKRARTAYTRYQTLELEKEFHFN 216
Query: 166 KYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCK 205
+YL R RR+EIA L L+ERQ+K+WFQNRRMK K+ + K
Sbjct: 217 RYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLK 256
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 92.8 bits (229), Expect = 4e-19
Identities = 69/196 (35%), Positives = 89/196 (45%), Gaps = 21/196 (10%)
Query: 29 ADTFQSSSIKTSTLSHSTLIPPPFEQTI-----PSLNPGSHP-RHGAGGRPKPSPAGSRG 82
A Q+S L S PPP + NP +HP R P A R
Sbjct: 30 ASEVQASRYCYGGLDLSITFPPPAPSNSLHGVDMAANPRAHPDRPACSAAAAPGHAPGRD 89
Query: 83 SPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAAATGPACLSHKES---------- 132
P L P Y + A ++ A A PA LS +
Sbjct: 90 EAAP---LNPGMYSQKAARPALEERAKSSGEIKEEQAQTGQPAGLSQPPAPPQIYPWMTK 146
Query: 133 LEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQ 192
L ++ + G +R RT+YT Q LELEKEFHFN+YL R RR+EIA L L ERQ+K+WFQ
Sbjct: 147 LHMSHETDG--KRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQ 204
Query: 193 NRRMKHKRQTQCKENQ 208
NRRMK K+ ++ K +
Sbjct: 205 NRRMKWKKDSKMKSKE 220
>gi|24497544 homeobox C6 isoform 2 [Homo sapiens]
Length = 153
Score = 92.8 bits (229), Expect = 4e-19
Identities = 50/97 (51%), Positives = 61/97 (62%), Gaps = 4/97 (4%)
Query: 138 GSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMK 197
G G RR R Y+ Q LELEKEFHFN+YL R RR+EIA L LTERQ+K+WFQNRRMK
Sbjct: 54 GYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMK 113
Query: 198 HKRQTQCKENQNSEGKCKSLED----SEKVEEDEEEK 230
K+++ + G + + EK EE EEEK
Sbjct: 114 WKKESNLTSTLSGGGGGATADSLGGKEEKREETEEEK 150
>gi|4758554 homeobox C6 isoform 1 [Homo sapiens]
Length = 235
Score = 92.8 bits (229), Expect = 4e-19
Identities = 50/97 (51%), Positives = 61/97 (62%), Gaps = 4/97 (4%)
Query: 138 GSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMK 197
G G RR R Y+ Q LELEKEFHFN+YL R RR+EIA L LTERQ+K+WFQNRRMK
Sbjct: 136 GYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMK 195
Query: 198 HKRQTQCKENQNSEGKCKSLED----SEKVEEDEEEK 230
K+++ + G + + EK EE EEEK
Sbjct: 196 WKKESNLTSTLSGGGGGATADSLGGKEEKREETEEEK 232
>gi|24497526 homeobox B1 [Homo sapiens]
Length = 301
Score = 92.0 bits (227), Expect = 8e-19
Identities = 59/153 (38%), Positives = 76/153 (49%), Gaps = 33/153 (21%)
Query: 57 PSLNPGSHPRHGAGGRPKPSPAGS------RGSPVPAGALQPPE--YPWMKEKKAAKKTA 108
P P HP +G +PA + + +P P+ P + WMK K+ KTA
Sbjct: 134 PGPYPPQHPPYGNEQTASFAPAYADLLSEDKETPCPSEPNTPTARTFDWMKVKRNPPKTA 193
Query: 109 LLPAAAAAATAAATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYL 168
++++ G LRT +T QL ELEKEFHFNKYL
Sbjct: 194 -------------------------KVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYL 228
Query: 169 CRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQ 201
R RRVEIAA L+L E QVK+WFQNRRMK K++
Sbjct: 229 SRARRVEIAATLELNETQVKIWFQNRRMKQKKR 261
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 91.3 bits (225), Expect = 1e-18
Identities = 50/91 (54%), Positives = 62/91 (68%), Gaps = 6/91 (6%)
Query: 139 SGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKH 198
SG +R R YT Q LELEKEFH+N+YL R RR+EIA L LTERQ+K+WFQNRRMK
Sbjct: 133 SGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKW 192
Query: 199 KRQTQCKENQNSEGKCKSLEDSEKVEEDEEE 229
K KEN+ + G + +D + EE+EEE
Sbjct: 193 K-----KENKTA-GPGTTGQDRAEAEEEEEE 217
>gi|13489077 homeobox A6 [Homo sapiens]
Length = 233
Score = 90.1 bits (222), Expect = 3e-18
Identities = 63/147 (42%), Positives = 74/147 (50%), Gaps = 8/147 (5%)
Query: 76 SPAGSRGSPVPAGALQ-PPEYPWMKEKKAAKKTALLPAAAAAATAAATGPACLSHKESLE 134
SP+GS P L PE + + + + AL A + P
Sbjct: 89 SPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQGKALHDEGADRKYTSPVYPWMQRMNSCAG 148
Query: 135 IADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNR 194
GS G RR R YT Q LELEKEFHFN+YL R RR+EIA L LTERQ+K+WFQNR
Sbjct: 149 AVYGSHG--RRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNR 206
Query: 195 RMKHKRQTQCKENQNSEGKCKSLEDSE 221
RMK K KEN+ S EDSE
Sbjct: 207 RMKWK-----KENKLINSTQPSGEDSE 228
>gi|13375632 homeobox D1 [Homo sapiens]
Length = 328
Score = 89.7 bits (221), Expect = 4e-18
Identities = 60/155 (38%), Positives = 76/155 (49%), Gaps = 29/155 (18%)
Query: 49 PPPFEQTIPSLNPGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPP--EYPWMKEKKAAKK 106
P PF + + G HP GA P+P S PA L + WMK K+ A K
Sbjct: 160 PGPFPACLKASADG-HP--GAFQTASPAPGTYPKSVSPASGLPAAFSTFEWMKVKRNASK 216
Query: 107 TALLPAAAAAATAAATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNK 166
L AA+ ++A +RT ++ QL ELEKEFHFNK
Sbjct: 217 KGKLAEYGAASPSSA------------------------IRTNFSTKQLTELEKEFHFNK 252
Query: 167 YLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQ 201
YL R RR+EIA L L + QVK+WFQNRRMK K++
Sbjct: 253 YLTRARRIEIANCLHLNDTQVKIWFQNRRMKQKKR 287
>gi|5031761 homeobox A1 isoform a [Homo sapiens]
Length = 335
Score = 89.7 bits (221), Expect = 4e-18
Identities = 63/176 (35%), Positives = 77/176 (43%), Gaps = 33/176 (18%)
Query: 56 IPSLNPGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAA 115
+ + N P H + SPA SP + WMK K+ KT +
Sbjct: 173 LATYNNSLSPLHASHQEACRSPASETSSPAQT-------FDWMKVKRNPPKTGKVGEY-- 223
Query: 116 AATAAATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVE 175
G G +RT +T QL ELEKEFHFNKYL R RRVE
Sbjct: 224 ----------------------GYLGQPNAVRTNFTTKQLTELEKEFHFNKYLTRARRVE 261
Query: 176 IAALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKT 231
IAA L L E QVK+WFQNRRMK K++ KE + EK EE E+ +
Sbjct: 262 IAASLQLNETQVKIWFQNRRMKQKKRE--KEGLLPISPATPPGNDEKAEESSEKSS 315
>gi|121114296 caudal type homeobox 1 [Homo sapiens]
Length = 265
Score = 89.7 bits (221), Expect = 4e-18
Identities = 60/166 (36%), Positives = 78/166 (46%), Gaps = 46/166 (27%)
Query: 49 PPPFEQTIPSLNPGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTA 108
PPP +P+ PG P A P G G+P GA +P Y WM+ AA
Sbjct: 94 PPPDFSPVPA-PPGPGPGLLA------QPLGGPGTPSSPGAQRPTPYEWMRRSVAA---- 142
Query: 109 LLPAAAAAATAAATGPACLSHKESLEIADGSGGGSRRLRT------AYTNTQLLELEKEF 162
G GGGS + RT YT+ Q LELEKEF
Sbjct: 143 -----------------------------GGGGGSGKTRTKDKYRVVYTDHQRLELEKEF 173
Query: 163 HFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENQ 208
H+++Y+ R+ E+AA L LTERQVK+WFQNRR K ++ + K+ Q
Sbjct: 174 HYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQQQ 219
>gi|24497556 homeobox A7 [Homo sapiens]
Length = 230
Score = 89.0 bits (219), Expect = 6e-18
Identities = 52/105 (49%), Positives = 64/105 (60%), Gaps = 14/105 (13%)
Query: 139 SGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKH 198
SG +R R YT Q LELEKEFHFN+YL R RR+EIA L LTERQ+K+WFQNRRMK
Sbjct: 126 SGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 185
Query: 199 KRQTQCKENQNS---EGKCKSL-----------EDSEKVEEDEEE 229
K++ + + + EG S ED ++ EEDEEE
Sbjct: 186 KKEHKDEGPTAAAAPEGAVPSAAATAAADKADEEDDDEEEEDEEE 230
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 89.0 bits (219), Expect = 6e-18
Identities = 48/91 (52%), Positives = 58/91 (63%), Gaps = 12/91 (13%)
Query: 140 GGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHK 199
G RR R YT Q LELEKEFH+N+YL R RR+EIA L LTERQ+K+WFQNRRMK K
Sbjct: 143 GPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 202
Query: 200 RQTQCKENQNSEGKCKSLEDSEKVEEDEEEK 230
+++ K L S+ E+EEEK
Sbjct: 203 KES------------KLLSASQLSAEEEEEK 221
>gi|12056969 homeobox C8 [Homo sapiens]
Length = 242
Score = 88.2 bits (217), Expect = 1e-17
Identities = 49/92 (53%), Positives = 59/92 (64%), Gaps = 10/92 (10%)
Query: 142 GSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQ 201
G R R Y+ Q LELEKEF FN YL R RR+E++ L LTERQVK+WFQNRRMK K+
Sbjct: 148 GRRSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKK- 206
Query: 202 TQCKENQNSEGKCKSLEDSEKVEE---DEEEK 230
+N++ K D EKVEE +EEEK
Sbjct: 207 ------ENNKDKLPGARDEEKVEEEGNEEEEK 232
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 87.4 bits (215), Expect = 2e-17
Identities = 67/172 (38%), Positives = 80/172 (46%), Gaps = 20/172 (11%)
Query: 62 GSHPRHGAGGRPKPSPAGSRGSPV-------PAGAL--QPP--EYPWMKEKKAAKKTALL 110
G HP GG P+ A G PV A AL Q P Y + + + A
Sbjct: 140 GLHPGGAQGGAGLPAQAALYGHPVYGYSAAAAAAALAGQHPALSYSYPQVQGAHPAHPAD 199
Query: 111 PAAAAAAT-------AAATGPACLSHKESLEIADGSG--GGSRRLRTAYTNTQLLELEKE 161
P A T A+T L S G RR RTA+T+ QLLELE +
Sbjct: 200 PIKLGAGTFQLDQWLRASTAGMILPKMPDFNSQAQSNLLGKCRRPRTAFTSQQLLELEHQ 259
Query: 162 FHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEGK 213
F NKYL RP+R E+A L LTE QVK+WFQNRRMK KR + KE E +
Sbjct: 260 FKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKKAKEQAAQEAE 311
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.127 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,133,033
Number of Sequences: 37866
Number of extensions: 977237
Number of successful extensions: 8766
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 401
Number of HSP's that attempted gapping in prelim test: 7017
Number of HSP's gapped (non-prelim): 1989
length of query: 376
length of database: 18,247,518
effective HSP length: 104
effective length of query: 272
effective length of database: 14,309,454
effective search space: 3892171488
effective search space used: 3892171488
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.