BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|10140847 homeobox A2 [Homo sapiens] (376 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|10140847 homeobox A2 [Homo sapiens] 761 0.0 gi|4504465 homeobox B2 [Homo sapiens] 304 1e-82 gi|19923391 homeobox D3 [Homo sapiens] 130 2e-30 gi|24497513 homeobox A3 isoform a [Homo sapiens] 122 5e-28 gi|13562112 homeobox A3 isoform a [Homo sapiens] 122 5e-28 gi|84570137 homeobox B3 [Homo sapiens] 115 6e-26 gi|24497515 homeobox A3 isoform b [Homo sapiens] 105 5e-23 gi|18959212 GS homeobox 2 [Homo sapiens] 100 2e-21 gi|24497517 homeobox A5 [Homo sapiens] 100 3e-21 gi|23397672 homeobox D4 [Homo sapiens] 99 8e-21 gi|33457326 GS homeobox 1 [Homo sapiens] 99 8e-21 gi|13273315 homeobox B4 [Homo sapiens] 97 2e-20 gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 97 3e-20 gi|148613882 homeobox A4 [Homo sapiens] 97 3e-20 gi|24497538 homeobox C4 [Homo sapiens] 96 4e-20 gi|24497540 homeobox C4 [Homo sapiens] 96 4e-20 gi|4504469 homeobox B5 [Homo sapiens] 96 7e-20 gi|11321638 homeobox C5 [Homo sapiens] 93 4e-19 gi|24497544 homeobox C6 isoform 2 [Homo sapiens] 93 4e-19 gi|4758554 homeobox C6 isoform 1 [Homo sapiens] 93 4e-19 gi|24497526 homeobox B1 [Homo sapiens] 92 8e-19 gi|85068580 homeobox B7 [Homo sapiens] 91 1e-18 gi|13489077 homeobox A6 [Homo sapiens] 90 3e-18 gi|13375632 homeobox D1 [Homo sapiens] 90 4e-18 gi|5031761 homeobox A1 isoform a [Homo sapiens] 90 4e-18 gi|121114296 caudal type homeobox 1 [Homo sapiens] 90 4e-18 gi|24497556 homeobox A7 [Homo sapiens] 89 6e-18 gi|23503237 homeobox B6 [Homo sapiens] 89 6e-18 gi|12056969 homeobox C8 [Homo sapiens] 88 1e-17 gi|89257348 homeo box HB9 [Homo sapiens] 87 2e-17 >gi|10140847 homeobox A2 [Homo sapiens] Length = 376 Score = 761 bits (1965), Expect = 0.0 Identities = 376/376 (100%), Positives = 376/376 (100%) Query: 1 MNYEFEREIGFINSQPSLAECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLN 60 MNYEFEREIGFINSQPSLAECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLN Sbjct: 1 MNYEFEREIGFINSQPSLAECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLN 60 Query: 61 PGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAA 120 PGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAA Sbjct: 61 PGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAA 120 Query: 121 ATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL 180 ATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL Sbjct: 121 ATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL 180 Query: 181 DLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKTLFEQALSVS 240 DLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKTLFEQALSVS Sbjct: 181 DLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKTLFEQALSVS 240 Query: 241 GALLEREGYTFQQNALSQQQAPNGHNGDSQSFPVSPLTSNEKNLKHFQHQSPTVPNCLST 300 GALLEREGYTFQQNALSQQQAPNGHNGDSQSFPVSPLTSNEKNLKHFQHQSPTVPNCLST Sbjct: 241 GALLEREGYTFQQNALSQQQAPNGHNGDSQSFPVSPLTSNEKNLKHFQHQSPTVPNCLST 300 Query: 301 MGQNCGAGLNNDSPEALEVPSLQDFSVFSTDSCLQLSDAVSPSLPGSLDSPVDISADSLD 360 MGQNCGAGLNNDSPEALEVPSLQDFSVFSTDSCLQLSDAVSPSLPGSLDSPVDISADSLD Sbjct: 301 MGQNCGAGLNNDSPEALEVPSLQDFSVFSTDSCLQLSDAVSPSLPGSLDSPVDISADSLD 360 Query: 361 FFTDTLTTIDLQHLNY 376 FFTDTLTTIDLQHLNY Sbjct: 361 FFTDTLTTIDLQHLNY 376 >gi|4504465 homeobox B2 [Homo sapiens] Length = 356 Score = 304 bits (778), Expect = 1e-82 Identities = 191/383 (49%), Positives = 222/383 (57%), Gaps = 40/383 (10%) Query: 1 MNYEFEREIGFINSQPSLAECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLN 60 MN+EFEREIGFINSQPSLAECLTSFP V +TFQ+SSIK STL PPPFEQT PSL Sbjct: 1 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPP---PPPFEQTFPSLQ 57 Query: 61 PGSHP--RHGAGGRPKPSPAGSRGSPVPAGALQP-PEYPWMKEKKAAKKTALLPAAAAAA 117 PG+ R + R + PA P P A P PE+PWMKEKK+AKK + + + A Sbjct: 58 PGASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPA 117 Query: 118 TAAATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIA 177 +A S + L + + GGG+RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIA Sbjct: 118 ASAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIA 177 Query: 178 ALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCK-SLEDSEKVEEDEEEKTLFEQA 236 ALLDLTERQVKVWFQNRRMKHKRQTQ +E + E C +LED E E A Sbjct: 178 ALLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALEDICDPAE--------EPA 229 Query: 237 LSVSGALLEREGYTFQQNALSQQQAPNGHNGDSQSFPVSPLTSNEKNLKHFQHQSPTVPN 296 S G R + + + P + D + V + + P Sbjct: 230 ASPGGPSASRAAW--EACCHPPEVVPGALSADPRPLAV-----------RLEGAGASSPG 276 Query: 297 CLSTMGQNCGAGLNNDSPEALEV-------PSLQDFSVFSTDSCLQLSDAVSPSLPGSLD 349 C GAG P +V P L D + F+ DSCLQLS +SPSL GSLD Sbjct: 277 CALR-----GAGGLEPGPLPEDVFSGRQDSPFLPDLNFFAADSCLQLSGGLSPSLQGSLD 331 Query: 350 SPVDISADSLDFFTDTLTTIDLQ 372 SPV S + LDFFT TL IDLQ Sbjct: 332 SPVPFSEEELDFFTSTLCAIDLQ 354 >gi|19923391 homeobox D3 [Homo sapiens] Length = 432 Score = 130 bits (327), Expect = 2e-30 Identities = 69/157 (43%), Positives = 90/157 (57%), Gaps = 19/157 (12%) Query: 49 PPPFEQTIPSLNPGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTA 108 PPP T+P S P + GG P P G + + + +PWMKE + K Sbjct: 119 PPPPPPTLPP----SSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQK 174 Query: 109 LLPAAAAAATAAATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYL 168 +C + ES E G S+R+RTAYT+ QL+ELEKEFHFN+YL Sbjct: 175 ---------------NSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYL 219 Query: 169 CRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCK 205 CRPRRVE+A LL+LTERQ+K+WFQNRRMK+K+ + K Sbjct: 220 CRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAK 256 >gi|24497513 homeobox A3 isoform a [Homo sapiens] Length = 443 Score = 122 bits (306), Expect = 5e-28 Identities = 75/200 (37%), Positives = 103/200 (51%), Gaps = 31/200 (15%) Query: 31 TFQSSSIKTSTLSHSTLIPPPFEQTIPSLNPGSH----PRHGAGGRPKPS----PAGSRG 82 T + + +L L PPP + P+ P P P PS P + Sbjct: 74 TLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASN 133 Query: 83 SPVPAGALQPPE----------YPWMKEKKAAKKTALLPAAAAAATAAATGPACLSHKES 132 +P PA A + P +PWMKE + K +++++G +C K Sbjct: 134 NPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQK--------TSSSSSGESCAGDK-- 183 Query: 133 LEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQ 192 + S+R RTAYT+ QL+ELEKEFHFN+YLCRPRRVE+A LL+LTERQ+K+WFQ Sbjct: 184 ---SPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQ 240 Query: 193 NRRMKHKRQTQCKENQNSEG 212 NRRMK+K+ + K S G Sbjct: 241 NRRMKYKKDQKGKGMLTSSG 260 >gi|13562112 homeobox A3 isoform a [Homo sapiens] Length = 443 Score = 122 bits (306), Expect = 5e-28 Identities = 75/200 (37%), Positives = 103/200 (51%), Gaps = 31/200 (15%) Query: 31 TFQSSSIKTSTLSHSTLIPPPFEQTIPSLNPGSH----PRHGAGGRPKPS----PAGSRG 82 T + + +L L PPP + P+ P P P PS P + Sbjct: 74 TLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASN 133 Query: 83 SPVPAGALQPPE----------YPWMKEKKAAKKTALLPAAAAAATAAATGPACLSHKES 132 +P PA A + P +PWMKE + K +++++G +C K Sbjct: 134 NPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQK--------TSSSSSGESCAGDK-- 183 Query: 133 LEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQ 192 + S+R RTAYT+ QL+ELEKEFHFN+YLCRPRRVE+A LL+LTERQ+K+WFQ Sbjct: 184 ---SPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQ 240 Query: 193 NRRMKHKRQTQCKENQNSEG 212 NRRMK+K+ + K S G Sbjct: 241 NRRMKYKKDQKGKGMLTSSG 260 >gi|84570137 homeobox B3 [Homo sapiens] Length = 431 Score = 115 bits (288), Expect = 6e-26 Identities = 66/166 (39%), Positives = 84/166 (50%), Gaps = 10/166 (6%) Query: 57 PSLNPGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAA 116 PS P S + + G + P L +PWMKE + K A Sbjct: 92 PSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESRQTSKLKNNSPGTAE 151 Query: 117 ATAAATGPACLSHKESLEIADGSGGG----------SRRLRTAYTNTQLLELEKEFHFNK 166 G G GGG S+R RTAYT+ QL+ELEKEFHFN+ Sbjct: 152 GCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNR 211 Query: 167 YLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEG 212 YLCRPRRVE+A LL+L+ERQ+K+WFQNRRMK+K+ + K +S G Sbjct: 212 YLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSG 257 >gi|24497515 homeobox A3 isoform b [Homo sapiens] Length = 285 Score = 105 bits (263), Expect = 5e-23 Identities = 51/95 (53%), Positives = 69/95 (72%), Gaps = 5/95 (5%) Query: 118 TAAATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIA 177 +++++G +C K + S+R RTAYT+ QL+ELEKEFHFN+YLCRPRRVE+A Sbjct: 13 SSSSSGESCAGDK-----SPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMA 67 Query: 178 ALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEG 212 LL+LTERQ+K+WFQNRRMK+K+ + K S G Sbjct: 68 NLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSG 102 >gi|18959212 GS homeobox 2 [Homo sapiens] Length = 304 Score = 100 bits (249), Expect = 2e-21 Identities = 62/144 (43%), Positives = 85/144 (59%), Gaps = 24/144 (16%) Query: 112 AAAAAATAAATGPACLSHKE---------SLEIADG------SGGGS--------RRLRT 148 AAAAAA AAA A L H + + +AD + GGS +R+RT Sbjct: 148 AAAAAAAAAAAAAAALGHPQHHAPVCTATTYNVADPRRFHCLTMGGSDASQVPNGKRMRT 207 Query: 149 AYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENQ 208 A+T+TQLLELE+EF N YL R RR+EIA L+L+E+QVK+WFQNRR+KHK++ + + + Sbjct: 208 AFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKGTQ-R 266 Query: 209 NSEGKCKSLEDSEKVEEDEEEKTL 232 NS CK + E+E +L Sbjct: 267 NSHAGCKCVGSQVHYARSEDEDSL 290 >gi|24497517 homeobox A5 [Homo sapiens] Length = 270 Score = 100 bits (248), Expect = 3e-21 Identities = 68/175 (38%), Positives = 93/175 (53%), Gaps = 16/175 (9%) Query: 40 STLSHSTLIPPPFEQTIPSLNPGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPPEYPWMK 99 +T +HS P P + + +PGS HG K S + S G+ AG+ + Sbjct: 90 ATSTHSPQ-PDPLPCSAVAPSPGSDSHHGG----KNSLSNSSGASADAGSTHISSREGVG 144 Query: 100 EKKAAKKTALLPAAAAAATAAA-------TGPACLSHKESLEIADGSGGG--SRRLRTAY 150 A++ A PA++ A+A + P L I+ + GG +R RTAY Sbjct: 145 TASGAEEDA--PASSEQASAQSEPSPAPPAQPQIYPWMRKLHISHDNIGGPEGKRARTAY 202 Query: 151 TNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCK 205 T Q LELEKEFHFN+YL R RR+EIA L L+ERQ+K+WFQNRRMK K+ + K Sbjct: 203 TRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLK 257 >gi|23397672 homeobox D4 [Homo sapiens] Length = 255 Score = 98.6 bits (244), Expect = 8e-21 Identities = 64/160 (40%), Positives = 84/160 (52%), Gaps = 16/160 (10%) Query: 61 PGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAA 120 PG H + A G P P+P +P+P P K+ TAL A Sbjct: 85 PGGH--YAAPGEPCPAPPAPPPAPLPGARAYSQSDP----KQPPSGTALKQPAVVYPWMK 138 Query: 121 ATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL 180 H S+ + +GG +R RTAYT Q+LELEKEFHFN+YL R RR+EIA L Sbjct: 139 KV------HVNSVN-PNYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTL 191 Query: 181 DLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCKSLEDS 220 L+ERQ+K+WFQNRRMK K+ + N++G+ S S Sbjct: 192 CLSERQIKIWFQNRRMKWKKDHKL---PNTKGRSSSSSSS 228 >gi|33457326 GS homeobox 1 [Homo sapiens] Length = 264 Score = 98.6 bits (244), Expect = 8e-21 Identities = 68/215 (31%), Positives = 101/215 (46%), Gaps = 36/215 (16%) Query: 48 IPPPFEQTIPSLNPGSHPRHGAG----------GRPKPSPAGSRGSPVPAGALQPPEYPW 97 +PPP + L+PG+ AG P G P+ + P + Sbjct: 33 VPPP--HALHGLSPGACHARKAGLLCVCPLCVTASQLHGPPGPPALPLLKASFPPFGSQY 90 Query: 98 MKEKKAAKKTALLPAAAAAATAAATGPACLS-----------HKESLEIADGSGGGSRRL 146 + +A+ P A AAA A H S++ + S+R+ Sbjct: 91 CHAPLGRQHSAVSPGVAHGPAAAAAAAALYQTSYPLPDPRQFHCISVDSSSNQLPSSKRM 150 Query: 147 RTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKE 206 RTA+T+TQLLELE+EF N YL R RR+EIA L+L+E+QVK+WFQNRR+KHK++ + Sbjct: 151 RTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKGSN 210 Query: 207 NQNSEG-------------KCKSLEDSEKVEEDEE 228 ++ G KC SL ++ E+D+E Sbjct: 211 HRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDDDE 245 >gi|13273315 homeobox B4 [Homo sapiens] Length = 251 Score = 97.1 bits (240), Expect = 2e-20 Identities = 63/160 (39%), Positives = 82/160 (51%), Gaps = 23/160 (14%) Query: 49 PPPFEQTIPSLNPGSHPRHGAGGRPKPSPAGSR----GSPVPAGALQPPEYPWMKEKKAA 104 PPP P PG PR P P PAG+ G A + PP P + Sbjct: 75 PPPPPPPPPPPPPGLSPR-----APAPPPAGALLPEPGQRCEAVSSSPPPPPCAQN---- 125 Query: 105 KKTALLPAAAAAATAAATGPACLSHKESLEIA----DGSGGGSRRLRTAYTNTQLLELEK 160 P + + +A P + ++ + +GG +R RTAYT Q+LELEK Sbjct: 126 ------PLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEK 179 Query: 161 EFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKR 200 EFH+N+YL R RRVEIA L L+ERQ+K+WFQNRRMK K+ Sbjct: 180 EFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKK 219 >gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] Length = 283 Score = 96.7 bits (239), Expect = 3e-20 Identities = 59/138 (42%), Positives = 71/138 (51%), Gaps = 27/138 (19%) Query: 73 PKPSPAGSRGSPVPAGALQPPE-----YPWMKEKKAAKKTALLPAAAAAATAAATGPACL 127 P P PAG G L+ P +PWMK KA A AA Sbjct: 93 PHP-PAGPFPEGAEPGVLEEPNRVQLPFPWMKSTKAHAWKGQWAGGAYAAEPEE------ 145 Query: 128 SHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQV 187 ++R RTAYT QLLELEKEF FNKY+ RPRRVE+A +L+LTER + Sbjct: 146 ---------------NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHI 190 Query: 188 KVWFQNRRMKHKRQTQCK 205 K+WFQNRRMK K++ K Sbjct: 191 KIWFQNRRMKWKKEEDKK 208 >gi|148613882 homeobox A4 [Homo sapiens] Length = 320 Score = 96.7 bits (239), Expect = 3e-20 Identities = 64/164 (39%), Positives = 80/164 (48%), Gaps = 42/164 (25%) Query: 48 IPPPFEQTIPSLNPGSHPRHGAGGRPKPS-PAGSRG----------SPVPAGALQPPEYP 96 +PPP + P P + PR P PAG SP+ +P YP Sbjct: 140 LPPPLQ---PRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLADKSPLGLKGKEPVVYP 196 Query: 97 WMKEKKAAKKTALLPAAAAAATAAATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLL 156 WMK+ +A P+ +GG +R RTAYT Q+L Sbjct: 197 WMKK----------------IHVSAVNPSY------------NGGEPKRSRTAYTRQQVL 228 Query: 157 ELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKR 200 ELEKEFHFN+YL R RR+EIA L L+ERQVK+WFQNRRMK K+ Sbjct: 229 ELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKK 272 >gi|24497538 homeobox C4 [Homo sapiens] Length = 264 Score = 96.3 bits (238), Expect = 4e-20 Identities = 57/140 (40%), Positives = 74/140 (52%), Gaps = 32/140 (22%) Query: 65 PRHGAGGRPKPSPAG----SRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAA 120 P GA P P+P + P A + QP YPWMK+ Sbjct: 102 PLSGASASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKK-------------------- 141 Query: 121 ATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL 180 H ++ + +GG +R RTAYT Q+LELEKEFH+N+YL R RR+EIA L Sbjct: 142 -------IHVSTVN-PNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSL 193 Query: 181 DLTERQVKVWFQNRRMKHKR 200 L+ERQ+K+WFQNRRMK K+ Sbjct: 194 CLSERQIKIWFQNRRMKWKK 213 >gi|24497540 homeobox C4 [Homo sapiens] Length = 264 Score = 96.3 bits (238), Expect = 4e-20 Identities = 57/140 (40%), Positives = 74/140 (52%), Gaps = 32/140 (22%) Query: 65 PRHGAGGRPKPSPAG----SRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAA 120 P GA P P+P + P A + QP YPWMK+ Sbjct: 102 PLSGASASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKK-------------------- 141 Query: 121 ATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL 180 H ++ + +GG +R RTAYT Q+LELEKEFH+N+YL R RR+EIA L Sbjct: 142 -------IHVSTVN-PNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSL 193 Query: 181 DLTERQVKVWFQNRRMKHKR 200 L+ERQ+K+WFQNRRMK K+ Sbjct: 194 CLSERQIKIWFQNRRMKWKK 213 >gi|4504469 homeobox B5 [Homo sapiens] Length = 269 Score = 95.5 bits (236), Expect = 7e-20 Identities = 62/160 (38%), Positives = 80/160 (50%), Gaps = 9/160 (5%) Query: 54 QTIPSLNPGSHPRHGAGGRPKPSPAGSRGSPV-----PAGALQPPEYPWMKEKKAAKKTA 108 +++P N SH + P + S A A PE + + Sbjct: 98 ESLPCTNGDSHGAKPSASSPSDQATSASSSANFTEIDEASASSEPEEA-ASQLSSPSLAR 156 Query: 109 LLPAAAAAATAAATG--PACLSHKESLEIA-DGSGGGSRRLRTAYTNTQLLELEKEFHFN 165 P A +TAA G P L I+ D +G +R RTAYT Q LELEKEFHFN Sbjct: 157 AQPEPMATSTAAPEGQTPQIFPWMRKLHISHDMTGPDGKRARTAYTRYQTLELEKEFHFN 216 Query: 166 KYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCK 205 +YL R RR+EIA L L+ERQ+K+WFQNRRMK K+ + K Sbjct: 217 RYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLK 256 >gi|11321638 homeobox C5 [Homo sapiens] Length = 222 Score = 92.8 bits (229), Expect = 4e-19 Identities = 69/196 (35%), Positives = 89/196 (45%), Gaps = 21/196 (10%) Query: 29 ADTFQSSSIKTSTLSHSTLIPPPFEQTI-----PSLNPGSHP-RHGAGGRPKPSPAGSRG 82 A Q+S L S PPP + NP +HP R P A R Sbjct: 30 ASEVQASRYCYGGLDLSITFPPPAPSNSLHGVDMAANPRAHPDRPACSAAAAPGHAPGRD 89 Query: 83 SPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAAATGPACLSHKES---------- 132 P L P Y + A ++ A A PA LS + Sbjct: 90 EAAP---LNPGMYSQKAARPALEERAKSSGEIKEEQAQTGQPAGLSQPPAPPQIYPWMTK 146 Query: 133 LEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQ 192 L ++ + G +R RT+YT Q LELEKEFHFN+YL R RR+EIA L L ERQ+K+WFQ Sbjct: 147 LHMSHETDG--KRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQ 204 Query: 193 NRRMKHKRQTQCKENQ 208 NRRMK K+ ++ K + Sbjct: 205 NRRMKWKKDSKMKSKE 220 >gi|24497544 homeobox C6 isoform 2 [Homo sapiens] Length = 153 Score = 92.8 bits (229), Expect = 4e-19 Identities = 50/97 (51%), Positives = 61/97 (62%), Gaps = 4/97 (4%) Query: 138 GSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMK 197 G G RR R Y+ Q LELEKEFHFN+YL R RR+EIA L LTERQ+K+WFQNRRMK Sbjct: 54 GYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMK 113 Query: 198 HKRQTQCKENQNSEGKCKSLED----SEKVEEDEEEK 230 K+++ + G + + EK EE EEEK Sbjct: 114 WKKESNLTSTLSGGGGGATADSLGGKEEKREETEEEK 150 >gi|4758554 homeobox C6 isoform 1 [Homo sapiens] Length = 235 Score = 92.8 bits (229), Expect = 4e-19 Identities = 50/97 (51%), Positives = 61/97 (62%), Gaps = 4/97 (4%) Query: 138 GSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMK 197 G G RR R Y+ Q LELEKEFHFN+YL R RR+EIA L LTERQ+K+WFQNRRMK Sbjct: 136 GYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMK 195 Query: 198 HKRQTQCKENQNSEGKCKSLED----SEKVEEDEEEK 230 K+++ + G + + EK EE EEEK Sbjct: 196 WKKESNLTSTLSGGGGGATADSLGGKEEKREETEEEK 232 >gi|24497526 homeobox B1 [Homo sapiens] Length = 301 Score = 92.0 bits (227), Expect = 8e-19 Identities = 59/153 (38%), Positives = 76/153 (49%), Gaps = 33/153 (21%) Query: 57 PSLNPGSHPRHGAGGRPKPSPAGS------RGSPVPAGALQPPE--YPWMKEKKAAKKTA 108 P P HP +G +PA + + +P P+ P + WMK K+ KTA Sbjct: 134 PGPYPPQHPPYGNEQTASFAPAYADLLSEDKETPCPSEPNTPTARTFDWMKVKRNPPKTA 193 Query: 109 LLPAAAAAATAAATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYL 168 ++++ G LRT +T QL ELEKEFHFNKYL Sbjct: 194 -------------------------KVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYL 228 Query: 169 CRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQ 201 R RRVEIAA L+L E QVK+WFQNRRMK K++ Sbjct: 229 SRARRVEIAATLELNETQVKIWFQNRRMKQKKR 261 >gi|85068580 homeobox B7 [Homo sapiens] Length = 217 Score = 91.3 bits (225), Expect = 1e-18 Identities = 50/91 (54%), Positives = 62/91 (68%), Gaps = 6/91 (6%) Query: 139 SGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKH 198 SG +R R YT Q LELEKEFH+N+YL R RR+EIA L LTERQ+K+WFQNRRMK Sbjct: 133 SGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKW 192 Query: 199 KRQTQCKENQNSEGKCKSLEDSEKVEEDEEE 229 K KEN+ + G + +D + EE+EEE Sbjct: 193 K-----KENKTA-GPGTTGQDRAEAEEEEEE 217 >gi|13489077 homeobox A6 [Homo sapiens] Length = 233 Score = 90.1 bits (222), Expect = 3e-18 Identities = 63/147 (42%), Positives = 74/147 (50%), Gaps = 8/147 (5%) Query: 76 SPAGSRGSPVPAGALQ-PPEYPWMKEKKAAKKTALLPAAAAAATAAATGPACLSHKESLE 134 SP+GS P L PE + + + + AL A + P Sbjct: 89 SPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQGKALHDEGADRKYTSPVYPWMQRMNSCAG 148 Query: 135 IADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNR 194 GS G RR R YT Q LELEKEFHFN+YL R RR+EIA L LTERQ+K+WFQNR Sbjct: 149 AVYGSHG--RRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNR 206 Query: 195 RMKHKRQTQCKENQNSEGKCKSLEDSE 221 RMK K KEN+ S EDSE Sbjct: 207 RMKWK-----KENKLINSTQPSGEDSE 228 >gi|13375632 homeobox D1 [Homo sapiens] Length = 328 Score = 89.7 bits (221), Expect = 4e-18 Identities = 60/155 (38%), Positives = 76/155 (49%), Gaps = 29/155 (18%) Query: 49 PPPFEQTIPSLNPGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPP--EYPWMKEKKAAKK 106 P PF + + G HP GA P+P S PA L + WMK K+ A K Sbjct: 160 PGPFPACLKASADG-HP--GAFQTASPAPGTYPKSVSPASGLPAAFSTFEWMKVKRNASK 216 Query: 107 TALLPAAAAAATAAATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNK 166 L AA+ ++A +RT ++ QL ELEKEFHFNK Sbjct: 217 KGKLAEYGAASPSSA------------------------IRTNFSTKQLTELEKEFHFNK 252 Query: 167 YLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQ 201 YL R RR+EIA L L + QVK+WFQNRRMK K++ Sbjct: 253 YLTRARRIEIANCLHLNDTQVKIWFQNRRMKQKKR 287 >gi|5031761 homeobox A1 isoform a [Homo sapiens] Length = 335 Score = 89.7 bits (221), Expect = 4e-18 Identities = 63/176 (35%), Positives = 77/176 (43%), Gaps = 33/176 (18%) Query: 56 IPSLNPGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAA 115 + + N P H + SPA SP + WMK K+ KT + Sbjct: 173 LATYNNSLSPLHASHQEACRSPASETSSPAQT-------FDWMKVKRNPPKTGKVGEY-- 223 Query: 116 AATAAATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVE 175 G G +RT +T QL ELEKEFHFNKYL R RRVE Sbjct: 224 ----------------------GYLGQPNAVRTNFTTKQLTELEKEFHFNKYLTRARRVE 261 Query: 176 IAALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKT 231 IAA L L E QVK+WFQNRRMK K++ KE + EK EE E+ + Sbjct: 262 IAASLQLNETQVKIWFQNRRMKQKKRE--KEGLLPISPATPPGNDEKAEESSEKSS 315 >gi|121114296 caudal type homeobox 1 [Homo sapiens] Length = 265 Score = 89.7 bits (221), Expect = 4e-18 Identities = 60/166 (36%), Positives = 78/166 (46%), Gaps = 46/166 (27%) Query: 49 PPPFEQTIPSLNPGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTA 108 PPP +P+ PG P A P G G+P GA +P Y WM+ AA Sbjct: 94 PPPDFSPVPA-PPGPGPGLLA------QPLGGPGTPSSPGAQRPTPYEWMRRSVAA---- 142 Query: 109 LLPAAAAAATAAATGPACLSHKESLEIADGSGGGSRRLRT------AYTNTQLLELEKEF 162 G GGGS + RT YT+ Q LELEKEF Sbjct: 143 -----------------------------GGGGGSGKTRTKDKYRVVYTDHQRLELEKEF 173 Query: 163 HFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENQ 208 H+++Y+ R+ E+AA L LTERQVK+WFQNRR K ++ + K+ Q Sbjct: 174 HYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQQQ 219 >gi|24497556 homeobox A7 [Homo sapiens] Length = 230 Score = 89.0 bits (219), Expect = 6e-18 Identities = 52/105 (49%), Positives = 64/105 (60%), Gaps = 14/105 (13%) Query: 139 SGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKH 198 SG +R R YT Q LELEKEFHFN+YL R RR+EIA L LTERQ+K+WFQNRRMK Sbjct: 126 SGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 185 Query: 199 KRQTQCKENQNS---EGKCKSL-----------EDSEKVEEDEEE 229 K++ + + + EG S ED ++ EEDEEE Sbjct: 186 KKEHKDEGPTAAAAPEGAVPSAAATAAADKADEEDDDEEEEDEEE 230 >gi|23503237 homeobox B6 [Homo sapiens] Length = 224 Score = 89.0 bits (219), Expect = 6e-18 Identities = 48/91 (52%), Positives = 58/91 (63%), Gaps = 12/91 (13%) Query: 140 GGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHK 199 G RR R YT Q LELEKEFH+N+YL R RR+EIA L LTERQ+K+WFQNRRMK K Sbjct: 143 GPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 202 Query: 200 RQTQCKENQNSEGKCKSLEDSEKVEEDEEEK 230 +++ K L S+ E+EEEK Sbjct: 203 KES------------KLLSASQLSAEEEEEK 221 >gi|12056969 homeobox C8 [Homo sapiens] Length = 242 Score = 88.2 bits (217), Expect = 1e-17 Identities = 49/92 (53%), Positives = 59/92 (64%), Gaps = 10/92 (10%) Query: 142 GSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQ 201 G R R Y+ Q LELEKEF FN YL R RR+E++ L LTERQVK+WFQNRRMK K+ Sbjct: 148 GRRSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKK- 206 Query: 202 TQCKENQNSEGKCKSLEDSEKVEE---DEEEK 230 +N++ K D EKVEE +EEEK Sbjct: 207 ------ENNKDKLPGARDEEKVEEEGNEEEEK 232 >gi|89257348 homeo box HB9 [Homo sapiens] Length = 401 Score = 87.4 bits (215), Expect = 2e-17 Identities = 67/172 (38%), Positives = 80/172 (46%), Gaps = 20/172 (11%) Query: 62 GSHPRHGAGGRPKPSPAGSRGSPV-------PAGAL--QPP--EYPWMKEKKAAKKTALL 110 G HP GG P+ A G PV A AL Q P Y + + + A Sbjct: 140 GLHPGGAQGGAGLPAQAALYGHPVYGYSAAAAAAALAGQHPALSYSYPQVQGAHPAHPAD 199 Query: 111 PAAAAAAT-------AAATGPACLSHKESLEIADGSG--GGSRRLRTAYTNTQLLELEKE 161 P A T A+T L S G RR RTA+T+ QLLELE + Sbjct: 200 PIKLGAGTFQLDQWLRASTAGMILPKMPDFNSQAQSNLLGKCRRPRTAFTSQQLLELEHQ 259 Query: 162 FHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEGK 213 F NKYL RP+R E+A L LTE QVK+WFQNRRMK KR + KE E + Sbjct: 260 FKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKKAKEQAAQEAE 311 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.311 0.127 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,133,033 Number of Sequences: 37866 Number of extensions: 977237 Number of successful extensions: 8766 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 325 Number of HSP's successfully gapped in prelim test: 401 Number of HSP's that attempted gapping in prelim test: 7017 Number of HSP's gapped (non-prelim): 1989 length of query: 376 length of database: 18,247,518 effective HSP length: 104 effective length of query: 272 effective length of database: 14,309,454 effective search space: 3892171488 effective search space used: 3892171488 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.