HOXC6 23926

Name: HOXC6	Sequence: fasta or formatted (153aa)		NCBI GI: 24497544
Description: homeobox C6 isoform 2		Referenced in: HOX Genes
Other entries for this name: alt prot [235aa] homeobox C6 isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.2 8 1 C cysteine 1.3 2 1 D aspartate 2.6 4 1 E glutamate 9.8 15 3 F phenylalanine 2.6 4 1 G glycine 8.5 13 5 H histidine 2.0 3 1 I isoleucine 5.2 8 1 K lysine 6.5 10 2 L leucine 6.5 10 1 M methionine 2.6 4 1 N asparagine 5.2 8 1 P proline 1.3 2 1 Q glutamine 8.5 13 1 R arginine 11.1 17 4 S serine 7.8 12 2 T threonine 7.2 11 1 V valine 0.7 1 1 W tryptophan 2.0 3 1 Y tyrosine 3.3 5 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 homeobox C6 isoform 2 HOXC6 1.000 homeobox C6 isoform 1 HOXA6 0.453 homeobox A6 HOXB6 0.446 homeobox B6 HOXA7 0.394 homeobox A7 HOXA5 0.388 homeobox A5 HOXB7 0.377 homeobox B7 HOXB5 0.356 homeobox B5 HOXC8 0.353 homeobox C8 HOXC5 0.346 homeobox C5 HOXB4 0.329 homeobox B4 HOXD4 0.322 homeobox D4 HOXA4 0.318 homeobox A4 HOXC4 0.311 homeobox C4 HOXC4 0.311 homeobox C4 HOXB8 0.311 homeobox B8 HOXD8 0.304 homeobox D8 HOXA3 0.253 homeobox A3 isoform a HOXA3 0.253 homeobox A3 isoform a PDX1 0.249 pancreatic and duodenal homeobox 1 HOXA3 0.239 homeobox A3 isoform b HOXB3 0.235 homeobox B3 HOXA2 0.235 homeobox A2 HOXD3 0.232 homeobox D3 MNX1 0.208 homeo box HB9 HOXD9 0.208 homeobox D9 HOXC9 0.204 homeobox C9 HOXB2 0.204 homeobox B2 HOXD10 0.197 homeobox D10 HOXA9 0.197 homeobox A9 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.