HOXC6 30715

Name: HOXC6	Sequence: fasta or formatted (235aa)		NCBI GI: 4758554
Description: homeobox C6 isoform 1		Referenced in: HOX Genes
Other entries for this name: alt prot [153aa] homeobox C6 isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.0 14 2 C cysteine 1.3 3 1 D aspartate 3.4 8 1 E glutamate 7.2 17 3 F phenylalanine 3.8 9 1 G glycine 7.7 18 5 H histidine 2.1 5 1 I isoleucine 3.8 9 1 K lysine 4.7 11 2 L leucine 6.0 14 1 M methionine 2.1 5 1 N asparagine 6.4 15 1 P proline 3.4 8 1 Q glutamine 7.2 17 1 R arginine 8.5 20 4 S serine 10.2 24 3 T threonine 6.4 15 1 V valine 3.0 7 2 W tryptophan 1.3 3 1 Y tyrosine 5.5 13 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 homeobox C6 isoform 1 HOXC6 0.631 homeobox C6 isoform 2 HOXA6 0.393 homeobox A6 HOXB6 0.354 homeobox B6 HOXA7 0.258 homeobox A7 HOXA5 0.255 homeobox A5 HOXB7 0.238 homeobox B7 HOXC8 0.231 homeobox C8 HOXB5 0.225 homeobox B5 HOXC5 0.218 homeobox C5 HOXB4 0.207 homeobox B4 HOXD4 0.203 homeobox D4 HOXA4 0.201 homeobox A4 HOXC4 0.197 homeobox C4 HOXC4 0.197 homeobox C4 HOXB8 0.197 homeobox B8 HOXD8 0.192 homeobox D8 HOXA3 0.159 homeobox A3 isoform a HOXA3 0.159 homeobox A3 isoform a PDX1 0.157 pancreatic and duodenal homeobox 1 HOXA3 0.151 homeobox A3 isoform b HOXB3 0.148 homeobox B3 HOXA2 0.148 homeobox A2 HOXD3 0.146 homeobox D3 HOXD9 0.138 homeobox D9 MNX1 0.131 homeo box HB9 HOXC9 0.129 homeobox C9 HOXB2 0.129 homeobox B2 HOXD10 0.124 homeobox D10 HOXA9 0.124 homeobox A9 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.