Guide to the Human Genome
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Name: WFDC1 Sequence: fasta or formatted (220aa) NCBI GI: 18379353
Description:

WAP four-disulfide core domain 1 precursor

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         23           2
 C cysteine            6.4         14           2
 D aspartate           3.6          8           1
 E glutamate           6.8         15           2
 F phenylalanine       0.5          1           1
 G glycine            10.0         22           2
 H histidine           2.3          5           1
 I isoleucine          2.7          6           2
 K lysine              4.1          9           1
 L leucine            10.5         23           6
 M methionine          0.5          1           1
 N asparagine          2.3          5           1
 P proline            11.8         26           4
 Q glutamine           5.5         12           2
 R arginine            9.5         21           2
 S serine              3.6          8           1
 T threonine           1.8          4           2
 V valine              3.6          8           1
 W tryptophan          1.8          4           1
 Y tyrosine            2.3          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   WAP four-disulfide core domain 1 precursor 
KAL1                  0.033   Kallmann syndrome 1 protein precursor 
SLPI                  0.031   secretory leukocyte peptidase inhibitor precursor [Ho...
WFDC5                 0.027   WAP four-disulfide core domain 5 precursor 
WFDC2                 0.024   WAP four-disulfide core domain 2 precursor 
ARX                   0.022   aristaless related homeobox 
LELP1                 0.022   late cornified envelope-like proline-rich 1 
USP31                 0.022   ubiquitin specific peptidase 31 
WFDC3                 0.020   WAP four-disulfide core domain 3 precursor 
KIF7                  0.018   kinesin family member 7 
HOXD4                 0.018   homeobox D4 
PI3                   0.018   elafin preproprotein 
FOXG1                 0.018   forkhead box G1 
HSPG2                 0.016   heparan sulfate proteoglycan 2 
LOC729417             0.016   PREDICTED: hypothetical protein 
LOC729417             0.016   PREDICTED: hypothetical protein 
LOC729417             0.016   PREDICTED: hypothetical protein 
C1orf96               0.016   hypothetical protein LOC126731 
DRD4                  0.016   dopamine receptor D4 
WFDC8                 0.016   WAP four-disulfide core domain 8 precursor 
WFDC8                 0.016   WAP four-disulfide core domain 8 precursor 
DNER                  0.016   delta-notch-like EGF repeat-containing transmembran...
DACT3                 0.016   thymus expressed gene 3-like 
MARCH11               0.016   membrane-associated ring finger (C3HC4) 11 
WFDC12                0.016   WAP four-disulfide core domain 12 precursor 
OTUD1                 0.013   OTU domain containing 1 
LOC100288243          0.013   PREDICTED: hypothetical protein 
LOC100287723          0.013   PREDICTED: hypothetical protein XP_002342271 
LOC100288243          0.013   PREDICTED: hypothetical protein XP_002342233 
KDM6B                 0.013   lysine (K)-specific demethylase 6B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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