Guide to the Human Genome
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Name: C1orf96 Sequence: fasta or formatted (270aa) NCBI GI: 188219563
Description:

hypothetical protein LOC126731

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.9         32           2
 C cysteine            1.5          4           1
 D aspartate           4.4         12           2
 E glutamate          11.1         30           2
 F phenylalanine       0.7          2           1
 G glycine             5.6         15           2
 H histidine           2.6          7           1
 I isoleucine          0.7          2           1
 K lysine              6.7         18           1
 L leucine             4.4         12           2
 M methionine          1.9          5           1
 N asparagine          2.2          6           1
 P proline             9.3         25           4
 Q glutamine           5.2         14           2
 R arginine            9.3         25           2
 S serine              9.6         26           3
 T threonine           3.7         10           1
 V valine              4.1         11           1
 W tryptophan          2.2          6           1
 Y tyrosine            3.0          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC126731 
NCOR2                 0.039   nuclear receptor co-repressor 2 isoform 2 
NCOR2                 0.039   nuclear receptor co-repressor 2 isoform 1 
NEFH                  0.037   neurofilament, heavy polypeptide 200kDa 
CCDC96                0.037   coiled-coil domain containing 96 
ACIN1                 0.036   apoptotic chromatin condensation inducer 1 
SLC38A10              0.036   solute carrier family 38, member 10 isoform a 
MYST3                 0.034   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.034   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.034   MYST histone acetyltransferase (monocytic leukemia)...
NOLC1                 0.034   nucleolar and coiled-body phosphoprotein 1 
SRRM2                 0.034   splicing coactivator subunit SRm300 
XRCC1                 0.032   X-ray repair cross complementing protein 1 
DACT3                 0.032   thymus expressed gene 3-like 
YTHDC1                0.032   splicing factor YT521-B isoform 1 
JSRP1                 0.032   junctional sarcoplasmic reticulum protein 1 
EHBP1L1               0.030   tangerin 
BASP1                 0.028   brain abundant, membrane attached signal protein 1 [...
MARCKS                0.028   myristoylated alanine-rich protein kinase C substra...
CAP1                  0.028   adenylyl cyclase-associated protein 
CAP1                  0.028   adenylyl cyclase-associated protein 
NEFM                  0.028   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.028   neurofilament, medium polypeptide 150kDa isoform 2 ...
EIF5B                 0.028   eukaryotic translation initiation factor 5B 
MEX3A                 0.028   MEX3A protein 
CCDC8                 0.026   coiled-coil domain containing 8 
KIAA1543              0.026   NEZHA isoform 2 
KIAA1543              0.026   NEZHA isoform 1 
TCOF1                 0.026   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.026   Treacher Collins-Franceschetti syndrome 1 isoform e...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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