Guide to the Human Genome
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Name: KAL1 Sequence: fasta or formatted (680aa) NCBI GI: 119395746
Description:

Kallmann syndrome 1 protein precursor

Referenced in:

Fibronectin Family
Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         45           4
 C cysteine            3.7         25           2
 D aspartate           2.9         20           2
 E glutamate           5.1         35           2
 F phenylalanine       3.7         25           2
 G glycine             5.3         36           2
 H histidine           3.8         26           2
 I isoleucine          3.2         22           2
 K lysine              7.1         48           3
 L leucine             7.8         53           2
 M methionine          0.7          5           1
 N asparagine          3.4         23           2
 P proline             7.2         49           2
 Q glutamine           5.4         37           1
 R arginine            5.4         37           3
 S serine              9.3         63           2
 T threonine           6.8         46           2
 V valine              7.6         52           2
 W tryptophan          2.1         14           1
 Y tyrosine            2.8         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Kallmann syndrome 1 protein precursor 
L1CAM                 0.022   L1 cell adhesion molecule isoform 3 precursor [Homo...
L1CAM                 0.022   L1 cell adhesion molecule isoform 2 precursor 
L1CAM                 0.022   L1 cell adhesion molecule isoform 1 precursor 
TTN                   0.019   titin isoform N2-A 
TTN                   0.019   titin isoform novex-2 
TTN                   0.019   titin isoform novex-1 
TTN                   0.019   titin isoform N2-B 
WFDC3                 0.019   WAP four-disulfide core domain 3 precursor 
PTPRD                 0.018   protein tyrosine phosphatase, receptor type, D isof...
PTPRD                 0.018   protein tyrosine phosphatase, receptor type, D isofor...
PTPRD                 0.018   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.018   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.018   protein tyrosine phosphatase, receptor type, D isofo...
PTPRF                 0.017   protein tyrosine phosphatase, receptor type, F isof...
PTPRF                 0.017   protein tyrosine phosphatase, receptor type, F isof...
EPHA2                 0.017   ephrin receptor EphA2 
WFDC2                 0.015   WAP four-disulfide core domain 2 precursor 
WFDC8                 0.015   WAP four-disulfide core domain 8 precursor 
WFDC8                 0.015   WAP four-disulfide core domain 8 precursor 
EPHB3                 0.014   ephrin receptor EphB3 precursor 
ROBO2                 0.013   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.013   roundabout, axon guidance receptor, homolog 2 isofor...
MYOM2                 0.013   myomesin 2 
PTPRQ                 0.012   protein tyrosine phosphatase, receptor type, Q [Hom...
SDK2                  0.012   sidekick 2 
COL12A1               0.012   collagen, type XII, alpha 1 short isoform precursor ...
COL12A1               0.012   collagen, type XII, alpha 1 long isoform precursor [...
PTPRU                 0.012   protein tyrosine phosphatase, receptor type, U isof...
PTPRU                 0.012   protein tyrosine phosphatase, receptor type, U isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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