Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 18250304
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|18250304 beta defensin 129 precursor [Homo sapiens]
(183 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|18250304 beta defensin 129 precursor [Homo sapiens] 371 e-103
gi|83582798 beta-defensin 115 [Homo sapiens] 39 0.003
gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 38 0.006
gi|104876423 heparan sulfate D-glucosaminyl 3-O-sulfotransferase... 37 0.009
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 37 0.012
gi|41281981 toll-like receptor adaptor molecule 1 [Homo sapiens] 36 0.021
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 35 0.028
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 35 0.036
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens] 35 0.036
gi|239749510 PREDICTED: hypothetical protein, partial [Homo sapi... 35 0.047
gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s... 35 0.047
gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s... 35 0.047
gi|45827755 transforming, acidic coiled-coil containing protein ... 35 0.047
gi|58865339 defensin, beta 121 [Homo sapiens] 35 0.047
gi|4506467 radixin [Homo sapiens] 34 0.061
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 34 0.061
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 34 0.061
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 34 0.061
gi|16905373 beta-defensin 118 [Homo sapiens] 34 0.061
gi|12669911 E2F transcription factor 1 [Homo sapiens] 34 0.080
gi|149944551 defensin, beta 131 [Homo sapiens] 34 0.080
gi|23503331 defensin, beta 123 precursor [Homo sapiens] 34 0.080
gi|150418009 transforming, acidic coiled-coil containing protein... 34 0.080
gi|45827753 transforming, acidic coiled-coil containing protein ... 34 0.080
gi|11119414 transforming, acidic coiled-coil containing protein ... 34 0.080
gi|21361337 eukaryotic translation initiation factor 5 [Homo sap... 34 0.080
gi|37537716 eukaryotic translation initiation factor 5 [Homo sap... 34 0.080
gi|161019170 mucin 5AC [Homo sapiens] 33 0.10
gi|4557329 fas ligand [Homo sapiens] 33 0.10
gi|116284392 mucin 2 precursor [Homo sapiens] 33 0.10
>gi|18250304 beta defensin 129 precursor [Homo sapiens]
Length = 183
Score = 371 bits (952), Expect = e-103
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MKLLFPIFASLMLQYQVNTEFIGLRRCLMGLGRCRDHCNVDEKEIQKCKMKKCCVGPKVV 60
MKLLFPIFASLMLQYQVNTEFIGLRRCLMGLGRCRDHCNVDEKEIQKCKMKKCCVGPKVV
Sbjct: 1 MKLLFPIFASLMLQYQVNTEFIGLRRCLMGLGRCRDHCNVDEKEIQKCKMKKCCVGPKVV 60
Query: 61 KLIKNYLQYGTPNVLNEDVQEMLKPAKNSSAVIQRKHILSVLPQIKSTSFFANTNFVIIP 120
KLIKNYLQYGTPNVLNEDVQEMLKPAKNSSAVIQRKHILSVLPQIKSTSFFANTNFVIIP
Sbjct: 61 KLIKNYLQYGTPNVLNEDVQEMLKPAKNSSAVIQRKHILSVLPQIKSTSFFANTNFVIIP 120
Query: 121 NATPMNSATISTMTPGQITYTATSTKSNTKESRDSATASPPPAPPPPNILPTPSLELEEA 180
NATPMNSATISTMTPGQITYTATSTKSNTKESRDSATASPPPAPPPPNILPTPSLELEEA
Sbjct: 121 NATPMNSATISTMTPGQITYTATSTKSNTKESRDSATASPPPAPPPPNILPTPSLELEEA 180
Query: 181 EEQ 183
EEQ
Sbjct: 181 EEQ 183
>gi|83582798 beta-defensin 115 [Homo sapiens]
Length = 88
Score = 38.5 bits (88), Expect = 0.003
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 24 LRRCLMGLGRCRDHCNVDEKEIQKCKMKKCCVGPK 58
+RRC G GRCR C E++ +KC K C PK
Sbjct: 35 IRRCYYGTGRCRKSCKEIERKKEKCGEKHICCVPK 69
>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
Length = 3571
Score = 37.7 bits (86), Expect = 0.006
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 124 PMNSATISTMTPGQITYTATSTKSNTKESRDSATA----SPPPAPPPPNILPTPSLELEE 179
P NS T++ G + + ++T S + T +PPP PPPP P+ SL ++
Sbjct: 3077 PQNSNTLTPPGAGMLGFPTSATSSPALSLSSAPTKPLLQTPPPPPPPPPPPPSSSLSGQQ 3136
Query: 180 AEEQ 183
E+Q
Sbjct: 3137 TEQQ 3140
Score = 28.9 bits (63), Expect = 2.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 155 SATASPPPAPPPPNILPTP 173
S+ +PPP PPPP + P P
Sbjct: 1953 SSPETPPPPPPPPPLPPAP 1971
Score = 27.7 bits (60), Expect = 5.7
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 131 STMTPGQITYTATSTKSNTKESRDSATASPPPAPPPPNILPTPS 174
S+M P +I T ST PPP PPPP P PS
Sbjct: 1975 SSMGPVKIPNTV-STPLQAPPPTPPPPPPPPPPPPPPPPPPPPS 2017
>gi|104876423 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 4
[Homo sapiens]
Length = 456
Score = 37.0 bits (84), Expect = 0.009
Identities = 13/18 (72%), Positives = 16/18 (88%)
Query: 156 ATASPPPAPPPPNILPTP 173
A A PPP+PPPP++LPTP
Sbjct: 71 AAAEPPPSPPPPSLLPTP 88
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 36.6 bits (83), Expect = 0.012
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 94 QRKHILSVLPQIKSTSFFANTNFVIIPNATPMNSATISTMTPGQITYTATSTKSNTKESR 153
Q++H V PQ FA+ +P + T T T + T T+T + T +
Sbjct: 712 QQQHEAGVAPQPPLKEPFASLQ-------SPFPTDTAPTTTAPAVAVTTTTTTTTTTTAT 764
Query: 154 DSATASPPPA-PPPPNI--LPTPS 174
PPPA PPPP + P PS
Sbjct: 765 QEEEKKPPPALPPPPPLAKFPPPS 788
Score = 28.5 bits (62), Expect = 3.4
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 120 PNATPMNSATISTMTPGQITYTATSTKSNTKESRDSATASPPPAPPPP 167
P A+ + T + TP TS+ ++ S S+ A P PPPP
Sbjct: 528 PPASRFSVGTQDSHTPPTPPTPTTSSSNSNSGSHSSSPAGPVSFPPPP 575
>gi|41281981 toll-like receptor adaptor molecule 1 [Homo sapiens]
Length = 712
Score = 35.8 bits (81), Expect = 0.021
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Query: 105 IKSTSFFANTNFVIIPNATPM-NSATISTMTPGQITYTATSTKSNTKESRDSATA---SP 160
++ T A + +P P+ N ++ TP Q++ T T NTK + T SP
Sbjct: 302 VECTEGSAGPQSLPLPILEPVKNPCSVKDQTPLQLSVEDT-TSPNTKPCPPTPTTPETSP 360
Query: 161 PPAPPPPNILP-----TPS----LELEEAEEQ 183
PP PPPP+ P TPS LE + EQ
Sbjct: 361 PPPPPPPSSTPCSAHLTPSSLFPSSLESSSEQ 392
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 35.4 bits (80), Expect = 0.028
Identities = 15/54 (27%), Positives = 34/54 (62%)
Query: 121 NATPMNSATISTMTPGQITYTATSTKSNTKESRDSATASPPPAPPPPNILPTPS 174
+++ +S++ S+ + + +++S+ S++ S S+++SP PA P P LP P+
Sbjct: 2610 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPA 2663
>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 35.0 bits (79), Expect = 0.036
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 122 ATPMNSATISTMTPGQITYTATSTKSNTKESRDSATASPPPAPP----PPNILPTPSL 175
A P + T + + + +++S+ S+ S S+++SPPPA P PP +L P +
Sbjct: 74 AAPNPATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASSPPRVLELPGV 131
Score = 31.6 bits (70), Expect = 0.40
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 126 NSATISTMTPGQITYTATSTKSNTKESRDSATASPPPAPPPPNILPTPSLEL 177
N AT + + + +++S+ S++ S S+++S PP PP P LEL
Sbjct: 77 NPATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASSPPRVLEL 128
>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 35.0 bits (79), Expect = 0.036
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 122 ATPMNSATISTMTPGQITYTATSTKSNTKESRDSATASPPPAPP----PPNILPTPSL 175
A P + T + + + +++S+ S+ S S+++SPPPA P PP +L P +
Sbjct: 74 AAPNPATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASSPPRVLELPGV 131
Score = 31.6 bits (70), Expect = 0.40
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 126 NSATISTMTPGQITYTATSTKSNTKESRDSATASPPPAPPPPNILPTPSLEL 177
N AT + + + +++S+ S++ S S+++S PP PP P LEL
Sbjct: 77 NPATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASSPPRVLEL 128
>gi|239749510 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 108
Score = 34.7 bits (78), Expect = 0.047
Identities = 19/62 (30%), Positives = 25/62 (40%)
Query: 105 IKSTSFFANTNFVIIPNATPMNSATISTMTPGQITYTATSTKSNTKESRDSATASPPPAP 164
I T+ T + I T M T + T T T T+ S T + + PPP P
Sbjct: 47 IAMTTTTTTTTTMTITTTTTMTITTTTMTTTTTTTMTTTTITSITNTTTTTTMTPPPPTP 106
Query: 165 PP 166
PP
Sbjct: 107 PP 108
Score = 27.7 bits (60), Expect = 5.7
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 107 STSFFANTNFVIIPNATPMNSATISTMTPGQITYTATSTKSNTK-ESRDSATASPPPAPP 165
+T+ A T + + T T+T +T T T+T + T S + T + PP
Sbjct: 43 TTTTIAMTTTTTTTTTMTITTTTTMTITTTTMTTTTTTTMTTTTITSITNTTTTTTMTPP 102
Query: 166 PPNILP 171
PP P
Sbjct: 103 PPTPPP 108
>gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
sapiens]
Length = 1858
Score = 34.7 bits (78), Expect = 0.047
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 103 PQIKSTSFFANTNFVIIPNATPMN-----SATISTMTP-GQITYTATSTKSNTKESRDSA 156
PQ+ + NF P N S T+ T TP GQ +++T S + ++
Sbjct: 1486 PQVGTPQREPQRNFYPAAQNLPANTQQATSGTLFTQTPSGQ----SSATYSQFNQQSLNS 1541
Query: 157 TASPPPAPPPPN 168
TA PPP PPPP+
Sbjct: 1542 TAPPPPPPPPPS 1553
Score = 28.9 bits (63), Expect = 2.6
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 84 KPAKNSSAVIQRKHILSVLPQIKSTSFFANTNFVIIPNATPMNSATISTMTPGQITYTAT 143
+P+ N Q K LS + T F + N + P T + +TPG
Sbjct: 1561 QPSANFQNYNQLKGSLS-----QQTVFTSGPNQAL-PGTTSQQTVPGHHVTPGHFL---- 1610
Query: 144 STKSNTKESRDSATASPPPAPPPPNILPTPSL 175
+++ T + +A PPP PPPP P P L
Sbjct: 1611 PSQNPTIHHQTAAAVVPPPPPPPP--APGPHL 1640
>gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
sapiens]
Length = 1858
Score = 34.7 bits (78), Expect = 0.047
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 103 PQIKSTSFFANTNFVIIPNATPMN-----SATISTMTP-GQITYTATSTKSNTKESRDSA 156
PQ+ + NF P N S T+ T TP GQ +++T S + ++
Sbjct: 1486 PQVGTPQREPQRNFYPAAQNLPANTQQATSGTLFTQTPSGQ----SSATYSQFNQQSLNS 1541
Query: 157 TASPPPAPPPPN 168
TA PPP PPPP+
Sbjct: 1542 TAPPPPPPPPPS 1553
Score = 28.9 bits (63), Expect = 2.6
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 84 KPAKNSSAVIQRKHILSVLPQIKSTSFFANTNFVIIPNATPMNSATISTMTPGQITYTAT 143
+P+ N Q K LS + T F + N + P T + +TPG
Sbjct: 1561 QPSANFQNYNQLKGSLS-----QQTVFTSGPNQAL-PGTTSQQTVPGHHVTPGHFL---- 1610
Query: 144 STKSNTKESRDSATASPPPAPPPPNILPTPSL 175
+++ T + +A PPP PPPP P P L
Sbjct: 1611 PSQNPTIHHQTAAAVVPPPPPPPP--APGPHL 1640
>gi|45827755 transforming, acidic coiled-coil containing protein 2
isoform b [Homo sapiens]
Length = 1094
Score = 34.7 bits (78), Expect = 0.047
Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 13/122 (10%)
Query: 75 LNEDVQEMLKPAKNSSAVIQRKHILSVLPQIKSTSFFANTNFVIIPNA-TPMNSATISTM 133
L+ +P NS + +++ P + S + +I P A + S T++
Sbjct: 14 LSAQTPRSAQPPGNSQNIKRKQQDTPGSPDHRDASSSPVADDIIQPAAPADLESPTLAAS 73
Query: 134 T-----PGQITYTATSTKSN-------TKESRDSATASPPPAPPPPNILPTPSLELEEAE 181
+ GQ++ + +S+ T ES A P P PPPP ++P P + +
Sbjct: 74 SYHGDVVGQVSTDLIAQRSSDSEEAFETPESTTPVKAPPAPPPPPPEVIPEPEVSTQPPP 133
Query: 182 EQ 183
E+
Sbjct: 134 EE 135
Score = 26.9 bits (58), Expect = 9.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 149 TKESRDSATASPPPAPPPPNILP 171
T E D+ ASPP +P PN +P
Sbjct: 453 TPEKLDNTPASPPRSPAEPNDIP 475
>gi|58865339 defensin, beta 121 [Homo sapiens]
Length = 76
Score = 34.7 bits (78), Expect = 0.047
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 1 MKLLFPIFASLMLQYQVNTEFIGLRRCLMGLGRCRDHCNVDEKEIQKCKMK-KCCVGPKV 59
MKLL + +L QV + +C GRCR C E CK + KCCV PK
Sbjct: 1 MKLLLLLLTVTLLLAQVTP----VMKCWGKSGRCRTTCKESEVYYILCKTEAKCCVDPKY 56
Query: 60 V 60
V
Sbjct: 57 V 57
>gi|4506467 radixin [Homo sapiens]
Length = 583
Score = 34.3 bits (77), Expect = 0.061
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 140 YTATSTKSNTKESRDSATASPPPAPPPPNILPTPSLELEEAEE 182
+ A TKE + ++PPP PPPP I PT + E +E +E
Sbjct: 450 FAAQEDLEKTKEELKTVMSAPPPPPPPPVIPPTEN-EHDEHDE 491
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 34.3 bits (77), Expect = 0.061
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 120 PNATPMNSATISTMTPGQITYTATSTKSNTKESRDSATASPPPAPPP 166
P+ P +S +PG T +++S+ S++ S S+++S P+PPP
Sbjct: 830 PSPIPPVEPLMSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPP 876
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 34.3 bits (77), Expect = 0.061
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 120 PNATPMNSATISTMTPGQITYTATSTKSNTKESRDSATASPPPAPPP 166
P+ P +S +PG T +++S+ S++ S S+++S P+PPP
Sbjct: 1031 PSPIPPVEPLMSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPP 1077
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 34.3 bits (77), Expect = 0.061
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 120 PNATPMNSATISTMTPGQITYTATSTKSNTKESRDSATASPPPAPPP 166
P+ P +S +PG T +++S+ S++ S S+++S P+PPP
Sbjct: 1031 PSPIPPVEPLMSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPP 1077
>gi|16905373 beta-defensin 118 [Homo sapiens]
Length = 123
Score = 34.3 bits (77), Expect = 0.061
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 1 MKLLFPIFASLMLQYQVNTEFIGLRRCLMGLGRCRDHCNVDEKEIQKCK-MKKCCV 55
MKLL L+L QV + G ++C G CR C E CK ++ CC+
Sbjct: 1 MKLLLLALPMLVLLPQVIPAYSGEKKCWNRSGHCRKQCKDGEAVKDTCKNLRACCI 56
>gi|12669911 E2F transcription factor 1 [Homo sapiens]
Length = 437
Score = 33.9 bits (76), Expect = 0.080
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 129 TISTMTPGQITYTATSTKSNTKESRDSAT-ASPPPAPPPPNILPTPSLELEEAEEQ 183
T+ ++PG+ T + T + DSAT SPPP+ PP ++ PS L E++
Sbjct: 302 TVGGISPGK-TPSQEVTSEEENRATDSATIVSPPPSSPPSSLTTDPSQSLLSLEQE 356
>gi|149944551 defensin, beta 131 [Homo sapiens]
Length = 70
Score = 33.9 bits (76), Expect = 0.080
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 1 MKLLFPIFASLMLQYQVNT--EFIGLRRCLMGLGRCRDHCNVDEKEIQKCKMKKCCVGPK 58
M++LF +F L L + V FI C CR CN DE I+ C C K
Sbjct: 1 MRVLFFVFGVLSLMFTVPPARSFISNDECPSEYYHCRLKCNADEHAIRYCADFSICCKLK 60
Query: 59 VVKL 62
++++
Sbjct: 61 IIEI 64
>gi|23503331 defensin, beta 123 precursor [Homo sapiens]
Length = 67
Score = 33.9 bits (76), Expect = 0.080
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 1 MKLLFPIFASLMLQYQVNTEFIGLRRCLMGLGRCRDHCNVDEKEIQKC-KMKKCCVGPK 58
MKLL L+L Q+ G +RC G+CR C+ E+ C K CCV PK
Sbjct: 1 MKLLLLTLTVLLLLSQLTPG--GTQRCWNLYGKCRYRCSKKERVYVYCINNKMCCVKPK 57
>gi|150418009 transforming, acidic coiled-coil containing protein 2
isoform a [Homo sapiens]
Length = 2948
Score = 33.9 bits (76), Expect = 0.080
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 149 TKESRDSATASPPPAPPPPNILPTPSLELEEAEEQ 183
T ES A P P PPPP ++P P + + E+
Sbjct: 1955 TPESTTPVKAPPAPPPPPPEVIPEPEVSTQPPPEE 1989
Score = 26.9 bits (58), Expect = 9.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 149 TKESRDSATASPPPAPPPPNILP 171
T E D+ ASPP +P PN +P
Sbjct: 2307 TPEKLDNTPASPPRSPAEPNDIP 2329
>gi|45827753 transforming, acidic coiled-coil containing protein 2
isoform c [Homo sapiens]
Length = 996
Score = 33.9 bits (76), Expect = 0.080
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 149 TKESRDSATASPPPAPPPPNILPTPSLELEEAEEQ 183
T ES A P P PPPP ++P P + + E+
Sbjct: 33 TPESTTPVKAPPAPPPPPPEVIPEPEVSTQPPPEE 67
Score = 26.9 bits (58), Expect = 9.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 149 TKESRDSATASPPPAPPPPNILP 171
T E D+ ASPP +P PN +P
Sbjct: 385 TPEKLDNTPASPPRSPAEPNDIP 407
>gi|11119414 transforming, acidic coiled-coil containing protein 2
isoform d [Homo sapiens]
Length = 1026
Score = 33.9 bits (76), Expect = 0.080
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 149 TKESRDSATASPPPAPPPPNILPTPSLELEEAEEQ 183
T ES A P P PPPP ++P P + + E+
Sbjct: 33 TPESTTPVKAPPAPPPPPPEVIPEPEVSTQPPPEE 67
Score = 26.9 bits (58), Expect = 9.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 149 TKESRDSATASPPPAPPPPNILP 171
T E D+ ASPP +P PN +P
Sbjct: 385 TPEKLDNTPASPPRSPAEPNDIP 407
>gi|21361337 eukaryotic translation initiation factor 5 [Homo
sapiens]
Length = 431
Score = 33.9 bits (76), Expect = 0.080
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 146 KSNTKESRDSATASPPPAPPPPNILPTPSLELEEAEE 182
K KE+ +++ PP PPPPN + P +EE E+
Sbjct: 164 KGKDKENGSVSSSETPPPPPPPNEINPPPHTMEEEED 200
Score = 30.8 bits (68), Expect = 0.68
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 129 TISTMTPGQITYTATSTKSNTKESRD---------SATASPPPAPPPPNILPTPSLELEE 179
T P + + + T K K++R S++ +PPP PPP I P P EE
Sbjct: 139 TFILKNPPENSDSGTGKKEKEKKNRKGKDKENGSVSSSETPPPPPPPNEINPPPHTMEEE 198
Query: 180 AEE 182
++
Sbjct: 199 EDD 201
>gi|37537716 eukaryotic translation initiation factor 5 [Homo
sapiens]
Length = 431
Score = 33.9 bits (76), Expect = 0.080
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 146 KSNTKESRDSATASPPPAPPPPNILPTPSLELEEAEE 182
K KE+ +++ PP PPPPN + P +EE E+
Sbjct: 164 KGKDKENGSVSSSETPPPPPPPNEINPPPHTMEEEED 200
Score = 30.8 bits (68), Expect = 0.68
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 129 TISTMTPGQITYTATSTKSNTKESRD---------SATASPPPAPPPPNILPTPSLELEE 179
T P + + + T K K++R S++ +PPP PPP I P P EE
Sbjct: 139 TFILKNPPENSDSGTGKKEKEKKNRKGKDKENGSVSSSETPPPPPPPNEINPPPHTMEEE 198
Query: 180 AEE 182
++
Sbjct: 199 EDD 201
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 33.5 bits (75), Expect = 0.10
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 115 NFVIIPNATPMNSATISTMTPG------QITYTATSTKSNTKESRDSATASPPPAPPPPN 168
N+ P+ +S + + TPG ++T TAT+T S + S+T P PPP
Sbjct: 4697 NYGHCPSTPATSSTAMPSSTPGTTWILTELTTTATTTASTGSTATPSST---PGTAPPPK 4753
Query: 169 ILPTPS 174
+L +P+
Sbjct: 4754 VLTSPA 4759
Score = 31.6 bits (70), Expect = 0.40
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 104 QIKSTSFFANTNFVIIPNATPMNSATISTMTPGQITYTATSTKSNTKESRDSATASP 160
Q + + A T IP++TP + +T T TATS+K+ + S +AT P
Sbjct: 3579 QTTAATTTATTGSTAIPSSTPGTAPPPKVLTSTATTPTATSSKATSSSSPRTATTLP 3635
Score = 30.0 bits (66), Expect = 1.2
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 18/91 (19%)
Query: 100 SVLPQIKSTSFFAN-TNFVIIPNA-----------TPMNSATISTMTPGQITYTA----- 142
+ LP ++ST+ T+F IP++ T +AT+ST TP TA
Sbjct: 4305 TALPALRSTATTPTATSFTAIPSSSLGTTWTRLSQTTTPTATMSTATPSSTPETAHTSTV 4364
Query: 143 -TSTKSNTKESRDSATASPPPAPPPPNILPT 172
T+T + T+ + AT S P +PT
Sbjct: 4365 LTTTATTTRATGSVATPSSTPGTAHTTKVPT 4395
Score = 30.0 bits (66), Expect = 1.2
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 98 ILSVLPQIKSTSFFANTNFVIIPNATPMNSATISTMTPGQITYTATSTKSNTKESRDSAT 157
IL+ L +T+ A+T P++TP + +T T TATS+K+ + S +AT
Sbjct: 4722 ILTELTTTATTT--ASTGSTATPSSTPGTAPPPKVLTSPATTPTATSSKATSSSSPRTAT 4779
Query: 158 ASP 160
P
Sbjct: 4780 TLP 4782
Score = 28.9 bits (63), Expect = 2.6
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 112 ANTNFVIIPNATPMNSATISTMTPGQITYTATSTKSNTKESRDSATASPP-----PAPPP 166
A+T P +T + +T T T TS+K+ S +ATA P P
Sbjct: 2611 ASTGSTATPTSTLRTAPPPKVLTTTATTPTVTSSKATPSSSPGTATALPALRSTATTPTA 2670
Query: 167 PNILPTPSLEL 177
++ P PS L
Sbjct: 2671 TSVTPIPSSSL 2681
Score = 27.7 bits (60), Expect = 5.7
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 115 NFVIIPNATPMNSATISTMTPG------QITYTATSTKSNTKESRDSATASPPPAPPPPN 168
N+ P+ +S + + TPG ++T TAT+T+S +TA+P P
Sbjct: 3048 NYGHCPSTPATSSTAMPSSTPGTTWILTELTTTATTTEST------GSTATPSSTPGTTW 3101
Query: 169 ILPTPS 174
IL PS
Sbjct: 3102 ILTEPS 3107
Score = 27.3 bits (59), Expect = 7.5
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 105 IKSTSFFANTNFVIIPNATPMNSATISTMTPGQITYTATSTKSNTKESRDSATASPPPAP 164
I +T+ + P++ P + T + +T T T +T S S + T+ P
Sbjct: 2770 ISTTTTPTTRGSTVTPSSIPGTTHTATVLTT---TTTTVATGSMATPSSSTQTSGTTHTP 2826
Query: 165 PPPNILPT 172
P PN + T
Sbjct: 2827 PVPNTMAT 2834
Score = 26.9 bits (58), Expect = 9.8
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 122 ATPMNSATIS-TMTPGQITYTATSTKSNTKESRDSATASPPP---APPPPNILPT 172
+TP S+T + + TPG T + T + +TA+P PPP +L T
Sbjct: 2580 STPATSSTATPSSTPGTTWILTKPTTTATTTASTGSTATPTSTLRTAPPPKVLTT 2634
>gi|4557329 fas ligand [Homo sapiens]
Length = 281
Score = 33.5 bits (75), Expect = 0.10
Identities = 18/52 (34%), Positives = 22/52 (42%)
Query: 126 NSATISTMTPGQITYTATSTKSNTKESRDSATASPPPAPPPPNILPTPSLEL 177
+SA+ PG + TS + R PPP PPPP P P L L
Sbjct: 17 SSASSPWAPPGTVLPCPTSVPRRPGQRRPPPPPPPPPLPPPPPPPPLPPLPL 68
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 33.5 bits (75), Expect = 0.10
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 114 TNFVIIPNATPMNSATISTMTPGQ-------ITYTATSTKSNTKESRDSATASPPP--AP 164
T+ +P T + T +T TP IT T T + T S T +PPP P
Sbjct: 1411 TSTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTTTPPPTTTPSPPISTTTTPPPTTTP 1470
Query: 165 PPPNILPTP 173
PP P+P
Sbjct: 1471 SPPTTTPSP 1479
Score = 31.6 bits (70), Expect = 0.40
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 120 PNATPMNSATISTM-----TPGQITYTATSTKSNTKESRDSATASPPP---APPPPNILP 171
P TP T +T TP T T + ++T + T SPPP PPP P
Sbjct: 1598 PTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTP 1657
Query: 172 TP 173
+P
Sbjct: 1658 SP 1659
Score = 30.0 bits (66), Expect = 1.2
Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 15/89 (16%)
Query: 100 SVLPQIKSTSFFANTNFVIIPNATPMNSATISTMTPGQIT-----YTATSTKSNTKESRD 154
+ LP + S T P TP T +T P T T T+ T S
Sbjct: 1414 TTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTTTPPPTTTPSPPISTTTTPPPTTTPSPP 1473
Query: 155 SATASPP---PAPP-------PPNILPTP 173
+ T SPP P+PP PP P+P
Sbjct: 1474 TTTPSPPTTTPSPPTTTTTTPPPTTTPSP 1502
Score = 29.6 bits (65), Expect = 1.5
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 100 SVLPQIKSTSFFANTNFVIIPNATPMNSATISTMTPGQITYTATSTKSNTKESRDSATAS 159
+ LP + S T P TP + T +T +P IT T T + T + T +
Sbjct: 1554 TTLPPTTTPSPPPTTTTTPPPTTTP-SPPTTTTPSPPTIT-TTTPPPTTTPSPPTTTTTT 1611
Query: 160 PPP--APPPPNILP 171
PPP P PP P
Sbjct: 1612 PPPTTTPSPPTTTP 1625
Score = 28.9 bits (63), Expect = 2.6
Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 103 PQIKSTSFFANTNFVIIPNATPMNSATISTMTPGQITYTATSTKSNTKESRDSATASPPP 162
P I +T+ T P TP T TP T T T+ T S + T PP
Sbjct: 1456 PPISTTTTPPPTTTPSPPTTTPSPPTT----TPSPPTTTTTTPPPTTTPSPPTTTPITPP 1511
Query: 163 APP---PPNILPTP 173
A PP P+P
Sbjct: 1512 ASTTTLPPTTTPSP 1525
Score = 28.9 bits (63), Expect = 2.6
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 103 PQIKSTSFFANTNFVIIPNATPMNSATISTMTPGQITYTATSTKSNTKESRDSATASPPP 162
P I +T+ T P T + T + TP T T +S + T + T SPPP
Sbjct: 1667 PPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTT-TPSSPITTTTTPSSTTTPSPPP 1725
Query: 163 ---APPPPNILPTP 173
P P P+P
Sbjct: 1726 TTMTTPSPTTTPSP 1739
Score = 28.9 bits (63), Expect = 2.6
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 120 PNATPMNSATISTMTPGQITYTATSTKSNTKESRDSATASPPPAP----PPPNILPTPS 174
P TP S+ I+T TP T T T+ T S T + P + PPP + TPS
Sbjct: 1677 PTTTP--SSPITT-TPSPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPSPPPTTMTTPS 1732
Score = 28.5 bits (62), Expect = 3.4
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 13/67 (19%)
Query: 120 PNATPMNSATI-STMTPGQITYTATSTKSNTKESRDSATASPPP------------APPP 166
P+ P ++ T+ T TP T T T+ T S T + PP PP
Sbjct: 1406 PSPPPTSTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTTTPPPTTTPSPPISTTTTPP 1465
Query: 167 PNILPTP 173
P P+P
Sbjct: 1466 PTTTPSP 1472
Score = 27.3 bits (59), Expect = 7.5
Identities = 22/76 (28%), Positives = 27/76 (35%), Gaps = 4/76 (5%)
Query: 100 SVLPQIKSTSFFANTNFVIIPNATPMNSATISTMTPGQITYTATSTKSNTKESRDSATAS 159
+ LP + S T P TP T P T T T + T + T +
Sbjct: 1515 TTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPP---TSTTTLPPTTTPSPPPTTTTT 1571
Query: 160 PPP-APPPPNILPTPS 174
PPP P P TPS
Sbjct: 1572 PPPTTTPSPPTTTTPS 1587
Score = 27.3 bits (59), Expect = 7.5
Identities = 16/61 (26%), Positives = 23/61 (37%)
Query: 114 TNFVIIPNATPMNSATISTMTPGQITYTATSTKSNTKESRDSATASPPPAPPPPNILPTP 173
T+ +P T + +T TP T + T + + T PP P I TP
Sbjct: 1630 TSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTP 1689
Query: 174 S 174
S
Sbjct: 1690 S 1690
Score = 26.9 bits (58), Expect = 9.8
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 120 PNATPMNSATISTMTPGQITYTATSTKSNTKESRDSATASPPPAPPPPNILP 171
P TP + T + +TP T T T + + + + T P P PP P
Sbjct: 1496 PTTTP-SPPTTTPITPPASTTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTP 1546
Score = 26.9 bits (58), Expect = 9.8
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 120 PNATPMNSATISTMTPGQITYTATSTKSNTKESRDSATASPPPA--PPPPNILPT 172
P TP+ T +T P T + T + T + T SPP P PP I T
Sbjct: 1542 PTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPP--TTTPSPPTTTTPSPPTITTT 1594
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.130 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,957,379
Number of Sequences: 37866
Number of extensions: 385429
Number of successful extensions: 8890
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 181
Number of HSP's that attempted gapping in prelim test: 6297
Number of HSP's gapped (non-prelim): 2124
length of query: 183
length of database: 18,247,518
effective HSP length: 96
effective length of query: 87
effective length of database: 14,612,382
effective search space: 1271277234
effective search space used: 1271277234
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.