Guide to the Human Genome
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Name: TACC2 Sequence: fasta or formatted (1026aa) NCBI GI: 11119414
Description:

transforming, acidic coiled-coil containing protein 2 isoform d

Referenced in:

Coiled-Coil Proteins

Other entries for this name:
alt prot [2948aa] transforming, acidic coiled-coil containing protein 2 isoform a
alt prot [996aa] transforming, acidic coiled-coil containing protein 2 isoform c
alt prot [1094aa] transforming, acidic coiled-coil containing protein 2 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         91           2
 C cysteine            0.8          8           1
 D aspartate           5.8         60           3
 E glutamate          10.7        110           2
 F phenylalanine       2.4         25           1
 G glycine             3.9         40           3
 H histidine           1.0         10           1
 I isoleucine          2.8         29           2
 K lysine              8.4         86           4
 L leucine             7.3         75           2
 M methionine          1.7         17           1
 N asparagine          2.7         28           1
 P proline            10.4        107           6
 Q glutamine           4.9         50           2
 R arginine            4.1         42           2
 S serine             11.0        113           3
 T threonine           6.1         63           2
 V valine              5.0         51           2
 W tryptophan          0.4          4           1
 Y tyrosine            1.7         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transforming, acidic coiled-coil containing protein ... 
TACC2                 0.981   transforming, acidic coiled-coil containing protein...
TACC2                 0.979   transforming, acidic coiled-coil containing protein ...
TACC2                 0.966   transforming, acidic coiled-coil containing protein ...
TACC1                 0.140   transforming, acidic coiled-coil containing protein...
TACC1                 0.137   transforming, acidic coiled-coil containing protein...
TACC1                 0.136   transforming, acidic coiled-coil containing protein...
TACC3                 0.093   transforming, acidic coiled-coil containing protein 3...
NACA                  0.027   nascent polypeptide-associated complex alpha subuni...
PRG4                  0.027   proteoglycan 4 isoform D 
PRG4                  0.027   proteoglycan 4 isoform C 
PRG4                  0.027   proteoglycan 4 isoform B 
PRG4                  0.027   proteoglycan 4 isoform A 
TTN                   0.022   titin isoform N2-A 
FLJ22184              0.022   PREDICTED: hypothetical protein FLJ22184 
NEFH                  0.021   neurofilament, heavy polypeptide 200kDa 
MLL2                  0.021   myeloid/lymphoid or mixed-lineage leukemia 2 
ZAN                   0.021   zonadhesin isoform 3 
ZAN                   0.021   zonadhesin isoform 6 
SRRM1                 0.019   serine/arginine repetitive matrix 1 
NCOR2                 0.019   nuclear receptor co-repressor 2 isoform 1 
MYH8                  0.019   myosin, heavy chain 8, skeletal muscle, perinatal [...
NCOR2                 0.019   nuclear receptor co-repressor 2 isoform 2 
MDC1                  0.018   mediator of DNA-damage checkpoint 1 
MUC17                 0.018   mucin 17 
FLJ22184              0.017   PREDICTED: hypothetical protein FLJ22184 
SMC1A                 0.017   structural maintenance of chromosomes 1A 
KIAA0754              0.017   hypothetical protein LOC643314 
DSP                   0.017   desmoplakin isoform I 
MUC2                  0.017   mucin 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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