Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: EIF5 Sequence: fasta or formatted (431aa) NCBI GI: 37537716
Description:

eukaryotic translation initiation factor 5

Referenced in:

Small RNAs in RNA Processing
Translation Factors

Other entries for this name:
alt mRNA [431aa] eukaryotic translation initiation factor 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         22           2
 C cysteine            1.9          8           1
 D aspartate           7.4         32           3
 E glutamate          11.8         51           4
 F phenylalanine       2.8         12           1
 G glycine             4.6         20           2
 H histidine           2.6         11           2
 I isoleucine          6.0         26           2
 K lysine             11.4         49           4
 L leucine             6.5         28           2
 M methionine          2.3         10           1
 N asparagine          5.3         23           2
 P proline             5.3         23           7
 Q glutamine           2.3         10           1
 R arginine            4.4         19           3
 S serine              5.8         25           3
 T threonine           3.9         17           2
 V valine              7.2         31           2
 W tryptophan          0.7          3           1
 Y tyrosine            2.6         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   eukaryotic translation initiation factor 5 
EIF5                  1.000   eukaryotic translation initiation factor 5 
EIF2S2                0.033   eukaryotic translation initiation factor 2 beta [Hom...
EIF2B5                0.024   eukaryotic translation initiation factor 2B, subunit...
HTATSF1               0.021   HIV-1 Tat specific factor 1 
HTATSF1               0.021   HIV-1 Tat specific factor 1 
EIF4G1                0.021   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.021   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.021   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.021   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.021   eukaryotic translation initiation factor 4 gamma, 1 ...
GPATCH8               0.019   G patch domain containing 8 
CHD7                  0.018   chromodomain helicase DNA binding protein 7 
BZW2                  0.018   basic leucine zipper and W2 domains 2 
BZW2                  0.018   basic leucine zipper and W2 domains 2 
DHX16                 0.018   DEAH (Asp-Glu-Ala-His) box polypeptide 16 
NOLC1                 0.016   nucleolar and coiled-body phosphoprotein 1 
TRIM44                0.016   DIPB protein 
BRD4                  0.016   bromodomain-containing protein 4 isoform short 
BRD4                  0.016   bromodomain-containing protein 4 isoform long 
EIF5B                 0.016   eukaryotic translation initiation factor 5B 
EIF4G2                0.015   eukaryotic translation initiation factor 4 gamma, 2...
EIF4G2                0.015   eukaryotic translation initiation factor 4 gamma, 2 i...
PHF23                 0.014   PHD finger protein 23 
BZW1                  0.014   basic leucine zipper and W2 domains 1 
PRKCSH                0.014   protein kinase C substrate 80K-H isoform 1 
HYOU1                 0.014   hypoxia up-regulated 1 precursor 
HYOU1                 0.014   hypoxia up-regulated 1 precursor 
ABI1                  0.014   abl-interactor 1 isoform c 
BAI1                  0.014   brain-specific angiogenesis inhibitor 1 precursor [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press