Guide to the Human Genome
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Search of human proteins with 18201888

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|18201888 poly(A) binding protein, cytoplasmic 5 [Homo
sapiens]
         (382 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|18201888 poly(A) binding protein, cytoplasmic 5 [Homo sapiens]     776   0.0  
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho...   490   e-138
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo...   490   e-138
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho...   490   e-138
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]     480   e-136
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]     451   e-127
gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo s...   451   e-127
gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo s...   439   e-123
gi|109948285 poly(A) binding protein, cytoplasmic 1-like 2B [Hom...   236   3e-62
gi|61175237 poly(A) binding protein, cytoplasmic 1-like 2A [Homo...   236   3e-62
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]               110   3e-24
gi|38201714 ELAV-like 1 [Homo sapiens]                                108   8e-24
gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens]             107   1e-23
gi|188219593 TIA1 protein isoform 1 [Homo sapiens]                    104   1e-22
gi|188219591 TIA1 protein isoform 2 [Homo sapiens]                    103   3e-22
gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens]             99   5e-21
gi|55956788 nucleolin [Homo sapiens]                                   94   3e-19
gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila...    90   3e-18
gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]               88   1e-17
gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens]                      87   2e-17
gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens]                      87   2e-17
gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens]                      87   2e-17
gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens]                      87   2e-17
gi|209862867 poly-U binding splicing factor 60KDa isoform c [Hom...    85   1e-16
gi|17978512 poly-U binding splicing factor 60KDa isoform a [Homo...    85   1e-16
gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]               85   1e-16
gi|17298690 poly-U binding splicing factor 60KDa isoform b [Homo...    83   4e-16
gi|157412270 heterogeneous nuclear ribonucleoprotein M isoform b...    83   5e-16
gi|226497734 RNA binding motif protein 19 [Homo sapiens]               82   8e-16
gi|226497654 RNA binding motif protein 19 [Homo sapiens]               82   8e-16

>gi|18201888 poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
          Length = 382

 Score =  776 bits (2003), Expect = 0.0
 Identities = 382/382 (100%), Positives = 382/382 (100%)

Query: 1   MGSGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG 60
           MGSGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG
Sbjct: 1   MGSGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG 60

Query: 61  YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNR 120
           YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNR
Sbjct: 61  YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNR 120

Query: 121 ALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF 180
           ALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF
Sbjct: 121 ALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF 180

Query: 181 KFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKG 240
           KFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKG
Sbjct: 181 KFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKG 240

Query: 241 FGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPP 300
           FGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPP
Sbjct: 241 FGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPP 300

Query: 301 GVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDE 360
           GVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDE
Sbjct: 301 GVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDE 360

Query: 361 MNGRIVGSKPLHVTLGQARRRC 382
           MNGRIVGSKPLHVTLGQARRRC
Sbjct: 361 MNGRIVGSKPLHVTLGQARRRC 382


>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
           sapiens]
          Length = 631

 Score =  490 bits (1261), Expect = e-138
 Identities = 243/365 (66%), Positives = 300/365 (82%), Gaps = 1/365 (0%)

Query: 15  YLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEW 74
           Y  A+LYVGDL  DVTE MLY+KF PAGP+   R+CRD +TR  LGY YVNF+ PADAE 
Sbjct: 8   YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67

Query: 75  ALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILS 134
           AL+TMNFD+I GKP R+MWSQ D  LRKSGVGN+FIKNLDKSIDN+AL+  FSAFGNILS
Sbjct: 68  ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127

Query: 135 CKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRD 194
           CKVVCD+NGSKGYA+VHF++  AA++AI  MNG+ LN+R+V+VGRFK  +ER AE+  + 
Sbjct: 128 CKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKA 187

Query: 195 RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQK 254
           +  FTNV++KN G+++DDE LKELF ++G T SVKV+RD +GKSKGFGFV YE HE A K
Sbjct: 188 K-EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANK 246

Query: 255 AVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIN 314
           AV +++GK I GK+++VGRAQKK+ER AEL+R+FE+L+ +  SR  GV +YIKNLD+TI+
Sbjct: 247 AVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 306

Query: 315 DEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVT 374
           DEKL++EFS FGSI+ AKVM+E G+ KGFG VCFSS EEATKAV EMNGRIVGSKPL+V 
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366

Query: 375 LGQAR 379
           L Q +
Sbjct: 367 LAQRK 371



 Score =  153 bits (386), Expect = 3e-37
 Identities = 97/285 (34%), Positives = 155/285 (54%), Gaps = 19/285 (6%)

Query: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
           +++ +LD  +    LY  F   G +   ++  D       GY +V+F     A+ A+  M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158

Query: 80  NFDLING-KPFRLMWSQPDDRLRKSGVG-----NIFIKNLDKSIDNRALFYLFSAFGNIL 133
           N  L+N  K F   +    +R  + G       N++IKN  + +D+ +L  LFS FG  L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218

Query: 134 SCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRT 192
           S KV+ D NG SKG+ +V ++    AN+A+  MNG  ++ + ++VGR +   ER AE++ 
Sbjct: 219 SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKR 278

Query: 193 R---------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243
           +          R    N+++KN+ D IDDEKL++ F  +G   S KV+ +  G+SKGFGF
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGF 337

Query: 244 VRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288
           V + + E A KAV +++G+ +  K LYV  AQ+K ER A L  ++
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382



 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 50/183 (27%), Positives = 98/183 (53%), Gaps = 19/183 (10%)

Query: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLD 258
           +++V ++  D+ +  L E F   GP  S++V RD  + +S G+ +V ++    A++A+  
Sbjct: 12  SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71

Query: 259 LHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP-IYIKNLDETINDEK 317
           ++   I GK + +  +Q+                     R  GV  ++IKNLD++I+++ 
Sbjct: 72  MNFDVIKGKPIRIMWSQRD-----------------PSLRKSGVGNVFIKNLDKSIDNKA 114

Query: 318 LKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
           L + FS+FG+I   KV+ +    KG+  V F + E A KA+++MNG ++  + + V   +
Sbjct: 115 LYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174

Query: 378 ARR 380
           +R+
Sbjct: 175 SRK 177



 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 3/100 (3%)

Query: 14  KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAE 73
           +Y    LY+ +LD  + ++ L K+F P G +   ++  +       G+G+V F  P +A 
Sbjct: 290 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEAT 347

Query: 74  WALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNL 113
            A+  MN  ++  KP  +  +Q  +  RK+ + N +++ +
Sbjct: 348 KAVTEMNGRIVGSKPLYVALAQRKEE-RKAHLTNQYMQRV 386


>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
           sapiens]
          Length = 644

 Score =  490 bits (1261), Expect = e-138
 Identities = 243/365 (66%), Positives = 300/365 (82%), Gaps = 1/365 (0%)

Query: 15  YLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEW 74
           Y  A+LYVGDL  DVTE MLY+KF PAGP+   R+CRD +TR  LGY YVNF+ PADAE 
Sbjct: 8   YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67

Query: 75  ALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILS 134
           AL+TMNFD+I GKP R+MWSQ D  LRKSGVGN+FIKNLDKSIDN+AL+  FSAFGNILS
Sbjct: 68  ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127

Query: 135 CKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRD 194
           CKVVCD+NGSKGYA+VHF++  AA++AI  MNG+ LN+R+V+VGRFK  +ER AE+  + 
Sbjct: 128 CKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKA 187

Query: 195 RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQK 254
           +  FTNV++KN G+++DDE LKELF ++G T SVKV+RD +GKSKGFGFV YE HE A K
Sbjct: 188 K-EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANK 246

Query: 255 AVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIN 314
           AV +++GK I GK+++VGRAQKK+ER AEL+R+FE+L+ +  SR  GV +YIKNLD+TI+
Sbjct: 247 AVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 306

Query: 315 DEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVT 374
           DEKL++EFS FGSI+ AKVM+E G+ KGFG VCFSS EEATKAV EMNGRIVGSKPL+V 
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366

Query: 375 LGQAR 379
           L Q +
Sbjct: 367 LAQRK 371



 Score =  153 bits (386), Expect = 3e-37
 Identities = 97/285 (34%), Positives = 155/285 (54%), Gaps = 19/285 (6%)

Query: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
           +++ +LD  +    LY  F   G +   ++  D       GY +V+F     A+ A+  M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158

Query: 80  NFDLING-KPFRLMWSQPDDRLRKSGVG-----NIFIKNLDKSIDNRALFYLFSAFGNIL 133
           N  L+N  K F   +    +R  + G       N++IKN  + +D+ +L  LFS FG  L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218

Query: 134 SCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRT 192
           S KV+ D NG SKG+ +V ++    AN+A+  MNG  ++ + ++VGR +   ER AE++ 
Sbjct: 219 SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKR 278

Query: 193 R---------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243
           +          R    N+++KN+ D IDDEKL++ F  +G   S KV+ +  G+SKGFGF
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGF 337

Query: 244 VRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288
           V + + E A KAV +++G+ +  K LYV  AQ+K ER A L  ++
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382



 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 50/183 (27%), Positives = 98/183 (53%), Gaps = 19/183 (10%)

Query: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLD 258
           +++V ++  D+ +  L E F   GP  S++V RD  + +S G+ +V ++    A++A+  
Sbjct: 12  SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71

Query: 259 LHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP-IYIKNLDETINDEK 317
           ++   I GK + +  +Q+                     R  GV  ++IKNLD++I+++ 
Sbjct: 72  MNFDVIKGKPIRIMWSQRD-----------------PSLRKSGVGNVFIKNLDKSIDNKA 114

Query: 318 LKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
           L + FS+FG+I   KV+ +    KG+  V F + E A KA+++MNG ++  + + V   +
Sbjct: 115 LYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174

Query: 378 ARR 380
           +R+
Sbjct: 175 SRK 177



 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 3/100 (3%)

Query: 14  KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAE 73
           +Y    LY+ +LD  + ++ L K+F P G +   ++  +       G+G+V F  P +A 
Sbjct: 290 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEAT 347

Query: 74  WALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNL 113
            A+  MN  ++  KP  +  +Q  +  RK+ + N +++ +
Sbjct: 348 KAVTEMNGRIVGSKPLYVALAQRKEE-RKAHLTNQYMQRV 386


>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
           sapiens]
          Length = 660

 Score =  490 bits (1261), Expect = e-138
 Identities = 243/365 (66%), Positives = 300/365 (82%), Gaps = 1/365 (0%)

Query: 15  YLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEW 74
           Y  A+LYVGDL  DVTE MLY+KF PAGP+   R+CRD +TR  LGY YVNF+ PADAE 
Sbjct: 8   YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67

Query: 75  ALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILS 134
           AL+TMNFD+I GKP R+MWSQ D  LRKSGVGN+FIKNLDKSIDN+AL+  FSAFGNILS
Sbjct: 68  ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127

Query: 135 CKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRD 194
           CKVVCD+NGSKGYA+VHF++  AA++AI  MNG+ LN+R+V+VGRFK  +ER AE+  + 
Sbjct: 128 CKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKA 187

Query: 195 RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQK 254
           +  FTNV++KN G+++DDE LKELF ++G T SVKV+RD +GKSKGFGFV YE HE A K
Sbjct: 188 K-EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANK 246

Query: 255 AVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIN 314
           AV +++GK I GK+++VGRAQKK+ER AEL+R+FE+L+ +  SR  GV +YIKNLD+TI+
Sbjct: 247 AVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 306

Query: 315 DEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVT 374
           DEKL++EFS FGSI+ AKVM+E G+ KGFG VCFSS EEATKAV EMNGRIVGSKPL+V 
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366

Query: 375 LGQAR 379
           L Q +
Sbjct: 367 LAQRK 371



 Score =  153 bits (386), Expect = 3e-37
 Identities = 97/285 (34%), Positives = 155/285 (54%), Gaps = 19/285 (6%)

Query: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
           +++ +LD  +    LY  F   G +   ++  D       GY +V+F     A+ A+  M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158

Query: 80  NFDLING-KPFRLMWSQPDDRLRKSGVG-----NIFIKNLDKSIDNRALFYLFSAFGNIL 133
           N  L+N  K F   +    +R  + G       N++IKN  + +D+ +L  LFS FG  L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218

Query: 134 SCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRT 192
           S KV+ D NG SKG+ +V ++    AN+A+  MNG  ++ + ++VGR +   ER AE++ 
Sbjct: 219 SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKR 278

Query: 193 R---------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243
           +          R    N+++KN+ D IDDEKL++ F  +G   S KV+ +  G+SKGFGF
Sbjct: 279 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGF 337

Query: 244 VRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288
           V + + E A KAV +++G+ +  K LYV  AQ+K ER A L  ++
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382



 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 50/183 (27%), Positives = 98/183 (53%), Gaps = 19/183 (10%)

Query: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLD 258
           +++V ++  D+ +  L E F   GP  S++V RD  + +S G+ +V ++    A++A+  
Sbjct: 12  SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71

Query: 259 LHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP-IYIKNLDETINDEK 317
           ++   I GK + +  +Q+                     R  GV  ++IKNLD++I+++ 
Sbjct: 72  MNFDVIKGKPIRIMWSQRD-----------------PSLRKSGVGNVFIKNLDKSIDNKA 114

Query: 318 LKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
           L + FS+FG+I   KV+ +    KG+  V F + E A KA+++MNG ++  + + V   +
Sbjct: 115 LYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174

Query: 378 ARR 380
           +R+
Sbjct: 175 SRK 177



 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 3/100 (3%)

Query: 14  KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAE 73
           +Y    LY+ +LD  + ++ L K+F P G +   ++  +       G+G+V F  P +A 
Sbjct: 290 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPEEAT 347

Query: 74  WALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNL 113
            A+  MN  ++  KP  +  +Q  +  RK+ + N +++ +
Sbjct: 348 KAVTEMNGRIVGSKPLYVALAQRKEE-RKAHLTNQYMQRV 386


>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
          Length = 636

 Score =  480 bits (1236), Expect = e-136
 Identities = 238/365 (65%), Positives = 296/365 (81%), Gaps = 1/365 (0%)

Query: 15  YLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEW 74
           Y  A+LYVGDL PDVTE MLY+KF PAGP+   R+CRD +TR  LGY YVNF+ PADAE 
Sbjct: 8   YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67

Query: 75  ALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILS 134
           AL+TMNFD+I GKP R+MWSQ D  LRKSGVGNIFIKNLDKSIDN+AL+  FSAFGNILS
Sbjct: 68  ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127

Query: 135 CKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRD 194
           CKVVCD+NGSKGY +VHF++  AA RAI  MNG+ LN+R+V+VGRFK  +ER AE+  R 
Sbjct: 128 CKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARA 187

Query: 195 RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQK 254
           +  FTNV++KN G+D+DDE+LK+LF ++GP  SVKV+ D SGKSKGFGFV +E HE AQK
Sbjct: 188 K-EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246

Query: 255 AVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIN 314
           AV +++GK ++GK +YVGRAQKK+ER  EL+R+FE+++    +R  GV +Y+KNLD+ I+
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306

Query: 315 DEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVT 374
           DE+L++EFS FG+I+ AKVMME G+ KGFG VCFSS EEATKAV EMNGRIV +KPL+V 
Sbjct: 307 DERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 366

Query: 375 LGQAR 379
           L Q +
Sbjct: 367 LAQRK 371



 Score =  155 bits (393), Expect = 4e-38
 Identities = 102/285 (35%), Positives = 156/285 (54%), Gaps = 19/285 (6%)

Query: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
           +++ +LD  +    LY  F   G +   ++  D       GYG+V+F     AE A+  M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158

Query: 80  NFDLING-KPFRLMWSQPDDRLRKSGVG-----NIFIKNLDKSIDNRALFYLFSAFGNIL 133
           N  L+N  K F   +    +R  + G       N++IKN  + +D+  L  LF  FG  L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218

Query: 134 SCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRT 192
           S KV+ D++G SKG+ +V F+    A +A+  MNG  LN +Q+YVGR +   ER  E++ 
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKR 278

Query: 193 R------DRATF---TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243
           +      DR T     N++VKN+ D IDDE+L++ F  +G   S KV+ +  G+SKGFGF
Sbjct: 279 KFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGF 337

Query: 244 VRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288
           V + + E A KAV +++G+ +  K LYV  AQ+K ER A L  ++
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382



 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 51/183 (27%), Positives = 99/183 (54%), Gaps = 19/183 (10%)

Query: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLD 258
           +++V ++  D+ +  L E F   GP  S++V RD  + +S G+ +V ++    A++A+  
Sbjct: 12  SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71

Query: 259 LHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP-IYIKNLDETINDEK 317
           ++   I GK + +  +Q+                     R  GV  I+IKNLD++I+++ 
Sbjct: 72  MNFDVIKGKPVRIMWSQRD-----------------PSLRKSGVGNIFIKNLDKSIDNKA 114

Query: 318 LKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
           L + FS+FG+I   KV+ +    KG+G V F + E A +A+++MNG ++  + + V   +
Sbjct: 115 LYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174

Query: 378 ARR 380
           +R+
Sbjct: 175 SRK 177



 Score = 40.4 bits (93), Expect = 0.003
 Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 3/100 (3%)

Query: 14  KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAE 73
           +Y    LYV +LD  + ++ L K+F P G +   ++  +       G+G+V F  P +A 
Sbjct: 290 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEAT 347

Query: 74  WALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNL 113
            A+  MN  ++  KP  +  +Q  +  R++ + N +++ +
Sbjct: 348 KAVTEMNGRIVATKPLYVALAQRKEE-RQAHLTNQYMQRM 386


>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
          Length = 631

 Score =  451 bits (1161), Expect = e-127
 Identities = 226/365 (61%), Positives = 284/365 (77%), Gaps = 1/365 (0%)

Query: 15  YLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEW 74
           Y  A+LYVGDL PDVTE MLY+KF PAGP+   RICRD +T     Y YVNF+   DAE 
Sbjct: 8   YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67

Query: 75  ALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILS 134
           AL+TMNFD+I GKP R+MWSQ D  LRKSGVGNIF+KNLDKSI+N+AL+   SAFGNILS
Sbjct: 68  ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127

Query: 135 CKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRD 194
           C VVCD+NGSKGY +VHF++  AA RAI  MNG+ LN R+V+VG+FK  +ER AE+  R 
Sbjct: 128 CNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARA 187

Query: 195 RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQK 254
           +  F NV++KN G+D+DDE+LK+LF ++GP  SVKV+ D SGKSKGFGFV +E HE AQK
Sbjct: 188 K-EFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246

Query: 255 AVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIN 314
           AV +++GK ++GK +YVGRAQKK+ER  EL+R FE+++    +R   V +Y+KNLD+ I+
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306

Query: 315 DEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVT 374
           DE+L++ FS FG+I+ AKVMME G+ KGFG VCFSS EEATKAV EMNGRIV +KPL+V 
Sbjct: 307 DERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 366

Query: 375 LGQAR 379
           L Q +
Sbjct: 367 LAQRK 371



 Score =  157 bits (398), Expect = 1e-38
 Identities = 109/315 (34%), Positives = 165/315 (52%), Gaps = 23/315 (7%)

Query: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
           ++V +LD  +    LY      G +    +  D       GYG+V+F     AE A+  M
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKM 158

Query: 80  NFDLING-KPFRLMWSQPDDRLRKSGVG-----NIFIKNLDKSIDNRALFYLFSAFGNIL 133
           N  L+NG K F   +    +R  + G       N++IKN  + +D+  L  LF  FG  L
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPAL 218

Query: 134 SCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRT 192
           S KV+ D++G SKG+ +V F+    A +A+  MNG  LN +Q+YVGR +   ER  E++ 
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKR 278

Query: 193 ------RDRAT---FTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243
                 +DR T     N++VKN+ D IDDE+L++ F  +G   S KV+ +  G+SKGFGF
Sbjct: 279 TFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFGF 337

Query: 244 VRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA----ELRRRFERLRLKEKSRP 299
           V + + E A KAV +++G+ +  K LYV  AQ+K ER A    E  +R   +R     R 
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRA 397

Query: 300 PGVPIYIKNLDETIN 314
           P    ++  + +T N
Sbjct: 398 PPSGYFMTAVPQTQN 412



 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 47/183 (25%), Positives = 94/183 (51%), Gaps = 19/183 (10%)

Query: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLD 258
           +++V ++  D+ +  L E F   GP  S+++ RD  +  S  + +V ++  + A+ A+  
Sbjct: 12  SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71

Query: 259 LHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP-IYIKNLDETINDEK 317
           ++   I GK + +  +Q+                     R  GV  I++KNLD++IN++ 
Sbjct: 72  MNFDVIKGKPVRIMWSQRD-----------------PSLRKSGVGNIFVKNLDKSINNKA 114

Query: 318 LKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
           L +  S+FG+I    V+ +    KG+G V F + E A +A+ +MNG ++  + + V   +
Sbjct: 115 LYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFK 174

Query: 378 ARR 380
           +R+
Sbjct: 175 SRK 177



 Score = 39.3 bits (90), Expect = 0.006
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 2/82 (2%)

Query: 14  KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAE 73
           +Y    LYV +LD  + ++ L K F P G +   ++  +       G+G+V F  P +A 
Sbjct: 290 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPEEAT 347

Query: 74  WALNTMNFDLINGKPFRLMWSQ 95
            A+  MN  ++  KP  +  +Q
Sbjct: 348 KAVTEMNGRIVATKPLYVALAQ 369


>gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo
           sapiens]
          Length = 370

 Score =  451 bits (1159), Expect = e-127
 Identities = 225/364 (61%), Positives = 289/364 (79%), Gaps = 1/364 (0%)

Query: 14  KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAE 73
           KY  A+LYVGDL  DVTED+L++KF   GP+   RICRD VTR  LGY YVNF   ADA+
Sbjct: 6   KYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQ 65

Query: 74  WALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNIL 133
            AL+TMNFD+I GK  RLMWSQ D  LR+SG+GN+FIKNLDKSIDN+ L+  FSAFG IL
Sbjct: 66  KALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 125

Query: 134 SCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR 193
           S KV+ DD GSKGYA+VHF + +AA+RAI  MNG  L   +V+VGRFK  ++R AE+R++
Sbjct: 126 SSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 185

Query: 194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQ 253
             + FTNV++KN G D+DDE+LK++F +YG T SVKV+ D+SGKSKGFGFV +++HEAA+
Sbjct: 186 -ASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAK 244

Query: 254 KAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETI 313
           KAV +++G+ I+G++++VGRAQKK+ER AEL++ FE+L+ +      GV +YIKNLD+TI
Sbjct: 245 KAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTI 304

Query: 314 NDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373
           +DEKL+ EFSSFGSISR KVM E GQ KGFG++CFSS E+ATKA+ EMNGRI+GSKPL +
Sbjct: 305 DDEKLRNEFSSFGSISRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSI 364

Query: 374 TLGQ 377
            L Q
Sbjct: 365 ALAQ 368



 Score =  144 bits (364), Expect = 1e-34
 Identities = 97/283 (34%), Positives = 154/283 (54%), Gaps = 23/283 (8%)

Query: 102 KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAAN 159
           K  + ++++ +L   +    LF  FS  G +LS ++  D     S GYAYV+F  LA A 
Sbjct: 6   KYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQ 65

Query: 160 RAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELF 219
           +A+  MN   +  + + +       +R A +R   R+   NVF+KN+   ID++ L E F
Sbjct: 66  KALDTMNFDIIKGKSIRL----MWSQRDAYLR---RSGIGNVFIKNLDKSIDNKTLYEHF 118

Query: 220 CEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIE 279
             +G   S KV+ D  G SKG+ FV ++   AA +A+ +++GK + G  ++VGR + + +
Sbjct: 119 SAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKD 177

Query: 280 RLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-G 338
           R AELR +                +YIKN    ++DE+LK+ FS +G     KVM +  G
Sbjct: 178 REAELRSKASEF----------TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSG 227

Query: 339 QGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQARRR 381
           + KGFG V F S E A KAV+EMNGR +  + + V  G+A+++
Sbjct: 228 KSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFV--GRAQKK 268



 Score =  138 bits (348), Expect = 7e-33
 Identities = 89/273 (32%), Positives = 150/273 (54%), Gaps = 19/273 (6%)

Query: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
           +++ +LD  +    LY+ F   G +  +++  D   +   GY +V+F+  + A+ A+  M
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDD--QGSKGYAFVHFQNQSAADRAIEEM 157

Query: 80  NFDLING-KPFRLMWSQPDDR-----LRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNIL 133
           N  L+ G K F   +    DR      + S   N++IKN    +D+  L  +FS +G  L
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTL 217

Query: 134 SCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRT 192
           S KV+ D +G SKG+ +V FDS  AA +A+  MNG  +N + ++VGR +   ER AE++ 
Sbjct: 218 SVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQ 277

Query: 193 ------RDR---ATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243
                 R+R        +++KN+ D IDDEKL+  F  +G    VKV+++  G+SKGFG 
Sbjct: 278 MFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGL 336

Query: 244 VRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQK 276
           + + + E A KA+ +++G+ +  K L +  AQ+
Sbjct: 337 ICFSSPEDATKAMTEMNGRILGSKPLSIALAQR 369


>gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo
           sapiens]
          Length = 614

 Score =  439 bits (1129), Expect = e-123
 Identities = 216/365 (59%), Positives = 282/365 (77%), Gaps = 1/365 (0%)

Query: 15  YLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEW 74
           Y  A+LYVGDL PDVTE MLY+KF PAGP+   R+CRD  TR  LGY Y+NF+ PADAE 
Sbjct: 8   YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAER 67

Query: 75  ALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILS 134
           AL+TMNF+++ G+P R+MWSQ D  LRKSGVGNIFIKNL+ SIDN+AL+  FS FGNILS
Sbjct: 68  ALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILS 127

Query: 135 CKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRD 194
           CKV CD++GS+G+ +VHF++  AA +AI  MNG+ LN+R+V+VG FK   ER AE+  R 
Sbjct: 128 CKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR- 186

Query: 195 RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQK 254
              FTN++VKN+  D+D++ L++LF ++G   SVKV+RD SG S+ FGFV +E HE AQK
Sbjct: 187 ALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQK 246

Query: 255 AVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIN 314
           AV+ ++GK + G++LY GRAQK++ER  EL+RRFE+++     R  GV +Y+KNLD++I+
Sbjct: 247 AVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSID 306

Query: 315 DEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVT 374
           D+KL++EFS +G I+ AKVM E G  KGFG VCFSS EEATKAV EMNGRIVG+KPL+V 
Sbjct: 307 DDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 366

Query: 375 LGQAR 379
           L Q +
Sbjct: 367 LAQRK 371



 Score =  151 bits (381), Expect = 1e-36
 Identities = 98/286 (34%), Positives = 157/286 (54%), Gaps = 21/286 (7%)

Query: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
           +++ +L+  +    LY  F   G +   ++  D       G+G+V+F     A+ A+NTM
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINTM 158

Query: 80  NFDLINGKPFRLMWSQPDDRLRKSGVG-------NIFIKNLDKSIDNRALFYLFSAFGNI 132
           N  L+N +    +      R R++ +G       NI++KNL   +D + L  LFS FG +
Sbjct: 159 NGMLLNDRKV-FVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKM 217

Query: 133 LSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR 191
           LS KV+ D++G S+ + +V+F+    A +A+ HMNG  ++ R +Y GR +   ER  E++
Sbjct: 218 LSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELK 277

Query: 192 TR---------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFG 242
            R          R    N++VKN+ D IDD+KL++ F  YG   S KV+ +  G SKGFG
Sbjct: 278 RRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFG 336

Query: 243 FVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288
           FV + + E A KAV +++G+ +  K LYV  AQ+K ER A L  ++
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 382



 Score = 76.3 bits (186), Expect = 4e-14
 Identities = 49/188 (26%), Positives = 98/188 (52%), Gaps = 29/188 (15%)

Query: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLD 258
           +++V ++  D+ +  L E F   GP  S++V RD A+ +S G+ ++ ++    A++A+  
Sbjct: 12  SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71

Query: 259 LHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP------IYIKNLDET 312
           ++ + + G                      + +R+    R PG+       I+IKNL+++
Sbjct: 72  MNFEMLKG----------------------QPIRIMWSQRDPGLRKSGVGNIFIKNLEDS 109

Query: 313 INDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLH 372
           I+++ L + FS+FG+I   KV  +    +GFG V F + E A +A++ MNG ++  + + 
Sbjct: 110 IDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVF 169

Query: 373 VTLGQARR 380
           V   ++RR
Sbjct: 170 VGHFKSRR 177



 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 3/101 (2%)

Query: 13  KKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADA 72
           ++Y    LYV +LD  + +D L K+F P G +   ++  +       G+G+V F  P +A
Sbjct: 289 RRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEA 346

Query: 73  EWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNL 113
             A+  MN  ++  KP  +  +Q  +  RK+ + N +++ L
Sbjct: 347 TKAVTEMNGRIVGTKPLYVALAQRKEE-RKAILTNQYMQRL 386


>gi|109948285 poly(A) binding protein, cytoplasmic 1-like 2B [Homo
           sapiens]
          Length = 200

 Score =  236 bits (602), Expect = 3e-62
 Identities = 117/196 (59%), Positives = 147/196 (75%), Gaps = 1/196 (0%)

Query: 18  AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
           A+LYVGDL P+VTE MLY+KF PAGP+   RICRD +TR  LGY YVN++ P DA+ AL 
Sbjct: 2   ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61

Query: 78  TMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
           T+NFD+I G+P R+MWSQ D  LRKSGVGN+FIKNL K+IDN+AL+ +FSAFGNILSCKV
Sbjct: 62  TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121

Query: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197
            CD+ G KGY +VHF    +A RAI  MNG+ LN R+++VGRFK  +ER AE     R +
Sbjct: 122 ACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQS 181

Query: 198 FTNVFVKNIGDDIDDE 213
            T+  VK+  +D D+E
Sbjct: 182 -TSADVKDFEEDTDEE 196



 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 10/181 (5%)

Query: 105 VGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAI 162
           + ++++ +L   +    L+  FS  G ILS ++  D     S GYAYV++     A RA+
Sbjct: 1   MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60

Query: 163 WHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEY 222
             +N   +  R V +       +R   +R   ++   NVF+KN+G  ID++ L  +F  +
Sbjct: 61  ETLNFDVIKGRPVRI----MWSQRDPSLR---KSGVGNVFIKNLGKTIDNKALYNIFSAF 113

Query: 223 GPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
           G   S KV  D  G  KG+GFV ++  E+A++A+  ++G  ++ + ++VGR +   ER A
Sbjct: 114 GNILSCKVACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREA 172

Query: 283 E 283
           E
Sbjct: 173 E 173



 Score = 70.1 bits (170), Expect = 3e-12
 Identities = 49/176 (27%), Positives = 89/176 (50%), Gaps = 19/176 (10%)

Query: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLD 258
           +++V ++  ++ +  L E F   GP  S+++ RD  + +S G+ +V Y+    A++A+  
Sbjct: 3   SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62

Query: 259 LHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP-IYIKNLDETINDEK 317
           L+   I G+ + +  +Q+                     R  GV  ++IKNL +TI+++ 
Sbjct: 63  LNFDVIKGRPVRIMWSQRD-----------------PSLRKSGVGNVFIKNLGKTIDNKA 105

Query: 318 LKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373
           L   FS+FG+I   KV  +    KG+G V F   E A +A+D MNG  +  + + V
Sbjct: 106 LYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFV 161


>gi|61175237 poly(A) binding protein, cytoplasmic 1-like 2A [Homo
           sapiens]
          Length = 200

 Score =  236 bits (602), Expect = 3e-62
 Identities = 117/196 (59%), Positives = 147/196 (75%), Gaps = 1/196 (0%)

Query: 18  AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
           A+LYVGDL P+VTE MLY+KF PAGP+   RICRD +TR  LGY YVN++ P DA+ AL 
Sbjct: 2   ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61

Query: 78  TMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
           T+NFD+I G+P R+MWSQ D  LRKSGVGN+FIKNL K+IDN+AL+ +FSAFGNILSCKV
Sbjct: 62  TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121

Query: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197
            CD+ G KGY +VHF    +A RAI  MNG+ LN R+++VGRFK  +ER AE     R +
Sbjct: 122 ACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQS 181

Query: 198 FTNVFVKNIGDDIDDE 213
            T+  VK+  +D D+E
Sbjct: 182 -TSADVKDFEEDTDEE 196



 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 10/181 (5%)

Query: 105 VGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAI 162
           + ++++ +L   +    L+  FS  G ILS ++  D     S GYAYV++     A RA+
Sbjct: 1   MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60

Query: 163 WHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEY 222
             +N   +  R V +       +R   +R   ++   NVF+KN+G  ID++ L  +F  +
Sbjct: 61  ETLNFDVIKGRPVRI----MWSQRDPSLR---KSGVGNVFIKNLGKTIDNKALYNIFSAF 113

Query: 223 GPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
           G   S KV  D  G  KG+GFV ++  E+A++A+  ++G  ++ + ++VGR +   ER A
Sbjct: 114 GNILSCKVACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREA 172

Query: 283 E 283
           E
Sbjct: 173 E 173



 Score = 70.1 bits (170), Expect = 3e-12
 Identities = 49/176 (27%), Positives = 89/176 (50%), Gaps = 19/176 (10%)

Query: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLD 258
           +++V ++  ++ +  L E F   GP  S+++ RD  + +S G+ +V Y+    A++A+  
Sbjct: 3   SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62

Query: 259 LHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP-IYIKNLDETINDEK 317
           L+   I G+ + +  +Q+                     R  GV  ++IKNL +TI+++ 
Sbjct: 63  LNFDVIKGRPVRIMWSQRD-----------------PSLRKSGVGNVFIKNLGKTIDNKA 105

Query: 318 LKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373
           L   FS+FG+I   KV  +    KG+G V F   E A +A+D MNG  +  + + V
Sbjct: 106 LYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFV 161


>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
          Length = 424

 Score =  110 bits (274), Expect = 3e-24
 Identities = 69/175 (39%), Positives = 98/175 (56%), Gaps = 5/175 (2%)

Query: 18  AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
           A +YVG LD  V+E +L++ F  AGP+  T + +D VT    GYG+V F    DA++A+ 
Sbjct: 13  ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72

Query: 78  TMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
            MN   + GKP R+  +   ++    G  NIFI NLD  ID + L+  FSAFG IL    
Sbjct: 73  IMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131

Query: 138 VC---DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAE 189
           +    D   SKGYA+++F S  A++ AI  MNG  L NR + V  + F ++   E
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS-YAFKKDSKGE 185



 Score = 76.3 bits (186), Expect = 4e-14
 Identities = 49/185 (26%), Positives = 94/185 (50%), Gaps = 21/185 (11%)

Query: 194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAA 252
           +R     V+V  + + + +  L ELF + GP  +  + +D  +G+ +G+GFV + + E A
Sbjct: 8   ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67

Query: 253 QKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDET 312
             A+  ++   + GK + V +A                     K+   G  I+I NLD  
Sbjct: 68  DYAIKIMNMIKLYGKPIRVNKASAH-----------------NKNLDVGANIFIGNLDPE 110

Query: 313 INDEKLKEEFSSFGSISRAKVMM---EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSK 369
           I+++ L + FS+FG I +   +M   + G  KG+  + F+SF+ +  A++ MNG+ + ++
Sbjct: 111 IDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR 170

Query: 370 PLHVT 374
           P+ V+
Sbjct: 171 PITVS 175



 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 9   AGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGP-LRFTRICRDPVTRSPLGYGYVNFR 67
           A  K   + A +++G+LDP++ E +LY  F   G  L+  +I RDP T +  GY ++NF 
Sbjct: 91  AHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFA 150

Query: 68  FPADAEWALNTMNFDLINGKPFRLMWSQPDD 98
               ++ A+  MN   +  +P  + ++   D
Sbjct: 151 SFDASDAAIEAMNGQYLCNRPITVSYAFKKD 181



 Score = 38.1 bits (87), Expect = 0.013
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361
           +Y+  LDE +++  L E F   G +    +  +   GQ +G+G V F S E+A  A+  M
Sbjct: 15  VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74

Query: 362 NGRIVGSKPLHVTLGQARRR 381
           N   +  KP+ V    A  +
Sbjct: 75  NMIKLYGKPIRVNKASAHNK 94


>gi|38201714 ELAV-like 1 [Homo sapiens]
          Length = 326

 Score =  108 bits (270), Expect = 8e-24
 Identities = 85/298 (28%), Positives = 136/298 (45%), Gaps = 48/298 (16%)

Query: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
           L V  L  ++T+D L   F   G +   ++ RD V    LGYG+VN+    DAE A+NT+
Sbjct: 22  LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81

Query: 80  NFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVC 139
           N   +  K  ++ +++P   + K    N++I  L +++  + +  +FS FG I++ +V+ 
Sbjct: 82  NGLRLQSKTIKVSYARPSSEVIKD--ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLV 139

Query: 140 DDNG--SKGYAYVHFDSLAAANRAIWHMNGVR----------------LNNRQVYV---- 177
           D     S+G A++ FD  + A  AI   NG +                  N+ V +    
Sbjct: 140 DQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVALLSQL 199

Query: 178 -----GRFKFPEERAAE--------VRTRDRATFTNV----------FVKNIGDDIDDEK 214
                 RF  P    A+        V      +  NV          F+ N+G D D+  
Sbjct: 200 YHSPARRFGGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGI 259

Query: 215 LKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271
           L ++F  +G   +VKVIRD  + K KGFGFV    +E A  A+  L+G  +  K+L V
Sbjct: 260 LWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQV 317



 Score = 87.4 bits (215), Expect = 2e-17
 Identities = 74/310 (23%), Positives = 140/310 (45%), Gaps = 48/310 (15%)

Query: 104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRA 161
           G  N+ +  L +++    L  LFS+ G + S K++ D     S GY +V++ +   A RA
Sbjct: 18  GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77

Query: 162 IWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCE 221
           I  +NG+RL ++ + V   +   E   +          N+++  +   +  + ++++F  
Sbjct: 78  INTLNGLRLQSKTIKVSYARPSSEVIKD---------ANLYISGLPRTMTQKDVEDMFSR 128

Query: 222 YGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDG-------KVLYVGR 273
           +G   + +V+ D  +G S+G  F+R++    A++A+   +G    G       K      
Sbjct: 129 FGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPN 188

Query: 274 AQKKIERLAEL-----------------RRRFERLRLKEKSRPPGVP----------IYI 306
             K +  L++L                 R RF  + +   S   GV           I+I
Sbjct: 189 QNKNVALLSQLYHSPARRFGGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFI 248

Query: 307 KNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGR 364
            NL +  ++  L + F  FG+++  KV+ +    + KGFG V  +++EEA  A+  +NG 
Sbjct: 249 YNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGY 308

Query: 365 IVGSKPLHVT 374
            +G K L V+
Sbjct: 309 RLGDKILQVS 318


>gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens]
          Length = 375

 Score =  107 bits (268), Expect = 1e-23
 Identities = 69/264 (26%), Positives = 128/264 (48%), Gaps = 14/264 (5%)

Query: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNG 167
           +++ NL + +    +  LFS  G   SCK++ +   +  Y +V F     A  A+  MNG
Sbjct: 11  LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNG 70

Query: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTES 227
            ++  ++V V     P       + +D +   +VFV ++  +I  E +K  F  +G    
Sbjct: 71  RKILGKEVKVNWATTPSS-----QKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISD 125

Query: 228 VKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER-LAELR 285
            +V++D A+GKSKG+GFV +     A+ A++ + G+ + G+ +    A +K     +   
Sbjct: 126 ARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 185

Query: 286 RRFERLRLKE---KSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKG 342
              ++LR ++   +S P    +Y   +   + D+ +++ FS FG I   +V  E    KG
Sbjct: 186 NNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KG 241

Query: 343 FGVVCFSSFEEATKAVDEMNGRIV 366
           +  V FS+ E A  A+  +NG  +
Sbjct: 242 YSFVRFSTHESAAHAIVSVNGTTI 265



 Score =  104 bits (260), Expect = 1e-22
 Identities = 76/267 (28%), Positives = 125/267 (46%), Gaps = 24/267 (8%)

Query: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
           LYVG+L  DVTE ++ + F   GP +  ++  +  +  P  Y +V F    DA  AL  M
Sbjct: 11  LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAAM 68

Query: 80  NFDLINGKPFRLMWSQPDDRLRK--SGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
           N   I GK  ++ W+      +K  S   ++F+ +L   I    +   F+ FG I   +V
Sbjct: 69  NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARV 128

Query: 138 VCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG--RFKFPEERAAEVRTR 193
           V D     SKGY +V F +   A  AI HM G  L  RQ+       K P  ++ +    
Sbjct: 129 VKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNT 188

Query: 194 DRATFTNV-----------FVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFG 242
            +  F +V           +   I   + D+ +++ F  +G    ++V  +     KG+ 
Sbjct: 189 KQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYS 243

Query: 243 FVRYETHEAAQKAVLDLHGKSIDGKVL 269
           FVR+ THE+A  A++ ++G +I+G V+
Sbjct: 244 FVRFSTHESAAHAIVSVNGTTIEGHVV 270



 Score = 68.6 bits (166), Expect = 9e-12
 Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 17/173 (9%)

Query: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
           ++V N+  D+ +  + +LF + GP +S K+I + +     + FV +  H  A  A+  ++
Sbjct: 11  LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP-YCFVEFYEHRDAAAALAAMN 69

Query: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
           G+ I GK + V  A     +  +    F               +++ +L   I  E +K 
Sbjct: 70  GRKILGKEVKVNWATTPSSQKKDTSNHFH--------------VFVGDLSPEITTEDIKS 115

Query: 321 EFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPL 371
            F+ FG IS A+V+  M  G+ KG+G V F +  +A  A+  M G+ +G + +
Sbjct: 116 AFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 168



 Score = 30.8 bits (68), Expect = 2.1
 Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
           +Y G +   +T+ ++ + F P G +   R+  +       GY +V F     A  A+ ++
Sbjct: 207 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSV 260

Query: 80  NFDLINGKPFRLMWSQPDDRLRKS 103
           N   I G   +  W +    + K+
Sbjct: 261 NGTTIEGHVVKCYWGKESPDMTKN 284


>gi|188219593 TIA1 protein isoform 1 [Homo sapiens]
          Length = 375

 Score =  104 bits (260), Expect = 1e-22
 Identities = 66/264 (25%), Positives = 124/264 (46%), Gaps = 14/264 (5%)

Query: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNG 167
           +++ NL + +    +  LFS  G   +CK++ D  G+  Y +V F     A  A+  MNG
Sbjct: 9   LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNG 68

Query: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTES 227
            ++  ++V V     P       + +D +   +VFV ++  +I  E +K  F  +G    
Sbjct: 69  RKIMGKEVKVNWATTPSS-----QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISD 123

Query: 228 VKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK----IERLA 282
            +V++D A+GKSKG+GFV +     A+ A+  + G+ + G+ +    A +K         
Sbjct: 124 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYE 183

Query: 283 ELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKG 342
              ++     +  +S P    +Y   +   + ++ +++ FS FG I   +V  +    KG
Sbjct: 184 SNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD----KG 239

Query: 343 FGVVCFSSFEEATKAVDEMNGRIV 366
           +  V F+S E A  A+  +NG  +
Sbjct: 240 YSFVRFNSHESAAHAIVSVNGTTI 263



 Score = 97.4 bits (241), Expect = 2e-20
 Identities = 74/267 (27%), Positives = 122/267 (45%), Gaps = 24/267 (8%)

Query: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
           LYVG+L  DVTE ++ + F   GP +  ++  D     P  Y +V F     A  AL  M
Sbjct: 9   LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAAALAAM 66

Query: 80  NFDLINGKPFRLMWSQPDDRLRK--SGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
           N   I GK  ++ W+      +K  S   ++F+ +L   I    +   F+ FG I   +V
Sbjct: 67  NGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARV 126

Query: 138 VCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG--RFKFPEERAA----- 188
           V D     SKGY +V F +   A  AI  M G  L  RQ+       K P  ++      
Sbjct: 127 VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNT 186

Query: 189 ------EVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFG 242
                 EV  +   +   V+   +   + ++ +++ F  +G    ++V  D     KG+ 
Sbjct: 187 KQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGYS 241

Query: 243 FVRYETHEAAQKAVLDLHGKSIDGKVL 269
           FVR+ +HE+A  A++ ++G +I+G V+
Sbjct: 242 FVRFNSHESAAHAIVSVNGTTIEGHVV 268



 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 46/173 (26%), Positives = 85/173 (49%), Gaps = 17/173 (9%)

Query: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
           ++V N+  D+ +  + +LF + GP ++ K+I D +G    + FV +  H  A  A+  ++
Sbjct: 9   LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67

Query: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
           G+ I GK + V  A     +  +    F               +++ +L   I  E +K 
Sbjct: 68  GRKIMGKEVKVNWATTPSSQKKDTSNHFH--------------VFVGDLSPEITTEDIKA 113

Query: 321 EFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPL 371
            F+ FG IS A+V+  M  G+ KG+G V F +  +A  A+ +M G+ +G + +
Sbjct: 114 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 166



 Score = 32.7 bits (73), Expect = 0.56
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
           +Y G +   +TE ++ + F P G +   R+  D       GY +V F     A  A+ ++
Sbjct: 205 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHESAAHAIVSV 258

Query: 80  NFDLINGKPFRLMWSQ 95
           N   I G   +  W +
Sbjct: 259 NGTTIEGHVVKCYWGK 274


>gi|188219591 TIA1 protein isoform 2 [Homo sapiens]
          Length = 386

 Score =  103 bits (256), Expect = 3e-22
 Identities = 67/270 (24%), Positives = 125/270 (46%), Gaps = 15/270 (5%)

Query: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNG 167
           +++ NL + +    +  LFS  G   +CK++ D  G+  Y +V F     A  A+  MNG
Sbjct: 9   LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNG 68

Query: 168 VRLNNRQVYVGRFKFPEERAAE------VRTRDRATFTNVFVKNIGDDIDDEKLKELFCE 221
            ++  ++V V     P  +  +      V T+      +VFV ++  +I  E +K  F  
Sbjct: 69  RKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAP 128

Query: 222 YGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK--- 277
           +G     +V++D A+GKSKG+GFV +     A+ A+  + G+ + G+ +    A +K   
Sbjct: 129 FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA 188

Query: 278 -IERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME 336
                    ++     +  +S P    +Y   +   + ++ +++ FS FG I   +V  +
Sbjct: 189 PKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD 248

Query: 337 VGQGKGFGVVCFSSFEEATKAVDEMNGRIV 366
               KG+  V F+S E A  A+  +NG  +
Sbjct: 249 ----KGYSFVRFNSHESAAHAIVSVNGTTI 274



 Score = 93.2 bits (230), Expect = 3e-19
 Identities = 76/278 (27%), Positives = 123/278 (44%), Gaps = 35/278 (12%)

Query: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
           LYVG+L  DVTE ++ + F   GP +  ++  D     P  Y +V F     A  AL  M
Sbjct: 9   LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAAALAAM 66

Query: 80  NFDLINGKPFRLMW-----SQPDDRLRKSGVG--------NIFIKNLDKSIDNRALFYLF 126
           N   I GK  ++ W     SQ  D    + V         ++F+ +L   I    +   F
Sbjct: 67  NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126

Query: 127 SAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG--RFKF 182
           + FG I   +VV D     SKGY +V F +   A  AI  M G  L  RQ+       K 
Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186

Query: 183 PEERAA-----------EVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVI 231
           P  ++            EV  +   +   V+   +   + ++ +++ F  +G    ++V 
Sbjct: 187 PAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF 246

Query: 232 RDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVL 269
            D     KG+ FVR+ +HE+A  A++ ++G +I+G V+
Sbjct: 247 PD-----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVV 279



 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 45/173 (26%), Positives = 86/173 (49%), Gaps = 6/173 (3%)

Query: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
           ++V N+  D+ +  + +LF + GP ++ K+I D +G    + FV +  H  A  A+  ++
Sbjct: 9   LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67

Query: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
           G+ I GK + V  A     +  +         +  +       +++ +L   I  E +K 
Sbjct: 68  GRKIMGKEVKVNWATTPSSQKKDTS---SSTVVSTQRSQDHFHVFVGDLSPEITTEDIKA 124

Query: 321 EFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPL 371
            F+ FG IS A+V+  M  G+ KG+G V F +  +A  A+ +M G+ +G + +
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177



 Score = 32.7 bits (73), Expect = 0.56
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
           +Y G +   +TE ++ + F P G +   R+  D       GY +V F     A  A+ ++
Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHESAAHAIVSV 269

Query: 80  NFDLINGKPFRLMWSQ 95
           N   I G   +  W +
Sbjct: 270 NGTTIEGHVVKCYWGK 285


>gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens]
          Length = 392

 Score = 99.4 bits (246), Expect = 5e-21
 Identities = 72/281 (25%), Positives = 130/281 (46%), Gaps = 31/281 (11%)

Query: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD------NGSKG-----------YAYV 150
           +++ NL + +    +  LFS  G   SCK++ +       N S G           Y +V
Sbjct: 11  LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70

Query: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDI 210
            F     A  A+  MNG ++  ++V V     P  +      +D +   +VFV ++  +I
Sbjct: 71  EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----KDTSNHFHVFVGDLSPEI 125

Query: 211 DDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVL 269
             E +K  F  +G     +V++D A+GKSKG+GFV +     A+ A++ + G+ + G+ +
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185

Query: 270 YVGRAQKKIER-LAELRRRFERLRLKE---KSRPPGVPIYIKNLDETINDEKLKEEFSSF 325
               A +K     +      ++LR ++   +S P    +Y   +   + D+ +++ FS F
Sbjct: 186 RTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPF 245

Query: 326 GSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIV 366
           G I   +V  E    KG+  V FS+ E A  A+  +NG  +
Sbjct: 246 GQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTI 282



 Score = 97.4 bits (241), Expect = 2e-20
 Identities = 80/282 (28%), Positives = 128/282 (45%), Gaps = 37/282 (13%)

Query: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTR-ICRDPVTR---SPLG-----------YGYV 64
           LYVG+L  DVTE ++ + F   GP +  + I   P +R   S +G           Y +V
Sbjct: 11  LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70

Query: 65  NFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRK--SGVGNIFIKNLDKSIDNRAL 122
            F    DA  AL  MN   I GK  ++ W+      +K  S   ++F+ +L   I    +
Sbjct: 71  EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDI 130

Query: 123 FYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG-- 178
              F+ FG I   +VV D     SKGY +V F +   A  AI HM G  L  RQ+     
Sbjct: 131 KSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 190

Query: 179 RFKFPEERAAEVRTRDRATFTNV-----------FVKNIGDDIDDEKLKELFCEYGPTES 227
             K P  ++ +     +  F +V           +   I   + D+ +++ F  +G    
Sbjct: 191 TRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIME 250

Query: 228 VKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVL 269
           ++V  +     KG+ FVR+ THE+A  A++ ++G +I+G V+
Sbjct: 251 IRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVV 287



 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 32/189 (16%)

Query: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDAS-----GKSKGFG-----------FV 244
           ++V N+  D+ +  + +LF + GP +S K+I +         S GF            FV
Sbjct: 11  LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70

Query: 245 RYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPI 304
            +  H  A  A+  ++G+ I GK + V  A     +  +    F               +
Sbjct: 71  EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFH--------------V 116

Query: 305 YIKNLDETINDEKLKEEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMN 362
           ++ +L   I  E +K  F+ FG IS A+V+  M  G+ KG+G V F +  +A  A+  M 
Sbjct: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176

Query: 363 GRIVGSKPL 371
           G+ +G + +
Sbjct: 177 GQWLGGRQI 185



 Score = 30.8 bits (68), Expect = 2.1
 Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
           +Y G +   +T+ ++ + F P G +   R+  +       GY +V F     A  A+ ++
Sbjct: 224 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSV 277

Query: 80  NFDLINGKPFRLMWSQPDDRLRKS 103
           N   I G   +  W +    + K+
Sbjct: 278 NGTTIEGHVVKCYWGKESPDMTKN 301


>gi|55956788 nucleolin [Homo sapiens]
          Length = 710

 Score = 93.6 bits (231), Expect = 3e-19
 Identities = 86/326 (26%), Positives = 146/326 (44%), Gaps = 35/326 (10%)

Query: 61  YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNR 120
           +GYV+F    D E AL      +  G   +L   +  D  ++     +  KNL   +   
Sbjct: 349 FGYVDFESAEDLEKALELTGLKVF-GNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQD 407

Query: 121 ALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV---YV 177
            L  +F     I   ++V  D  SKG AY+ F + A A +      G  ++ R +   Y 
Sbjct: 408 ELKEVFEDAAEI---RLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYT 464

Query: 178 GRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK 237
           G     ++      +        + + N+     +E L+E+F +      +KV ++ +GK
Sbjct: 465 GEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGK 521

Query: 238 SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKS 297
           SKG+ F+ + + E A++A+   + + I+G+                +R   +  R    +
Sbjct: 522 SKGYAFIEFASFEDAKEALNSCNKREIEGRA---------------IRLELQGPRGSPNA 566

Query: 298 R-PPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEA 354
           R  P   +++K L E   +E LKE F   GS+ RA+++   E G  KGFG V F+S E+A
Sbjct: 567 RSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDA 623

Query: 355 TKAVDEM-NGRIVGSKPLHVTLGQAR 379
             A + M +G I G+K   VTL  A+
Sbjct: 624 KAAKEAMEDGEIDGNK---VTLDWAK 646



 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 81/288 (28%), Positives = 123/288 (42%), Gaps = 34/288 (11%)

Query: 8   PAGKKKKYLKAA--LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVN 65
           P GK  K  + A  L   +L   VT+D L + F  A  +R   + +D  ++   G  Y+ 
Sbjct: 381 PKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRL--VSKDGKSK---GIAYIE 435

Query: 66  FRFPADAEWALNTMNFDLINGKPFRLMWS-----QPDDRLRKSGVGN-----IFIKNLDK 115
           F+  ADAE          I+G+   L ++       D R  K+   +     + + NL  
Sbjct: 436 FKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSY 495

Query: 116 SIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQ 174
           S     L  +F     I   KV  + NG SKGYA++ F S   A  A+   N   +  R 
Sbjct: 496 SATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRA 552

Query: 175 VYV---GRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVI 231
           + +   G    P  R+   +T        +FVK + +D  +E LKE F   G   +  V 
Sbjct: 553 IRLELQGPRGSPNARSQPSKT--------LFVKGLSEDTTEETLKESFD--GSVRARIVT 602

Query: 232 RDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIE 279
              +G SKGFGFV + + E A+ A   +    IDG  + +  A+ K E
Sbjct: 603 DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 650



 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 41/189 (21%), Positives = 79/189 (41%), Gaps = 20/189 (10%)

Query: 183 PEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFG 242
           PE +  +V   +  T  N+FV N+  +    +LK    +      + V+    G ++ FG
Sbjct: 291 PEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVVDVRIGMTRKFG 350

Query: 243 FVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGV 302
           +V +E+ E  +KA L+L G  + G  + + + + K                  K      
Sbjct: 351 YVDFESAEDLEKA-LELTGLKVFGNEIKLEKPKGK----------------DSKKERDAR 393

Query: 303 PIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMN 362
            +  KNL   +  ++LKE F     I   +++ + G+ KG   + F +  +A K  +E  
Sbjct: 394 TLLAKNLPYKVTQDELKEVFEDAAEI---RLVSKDGKSKGIAYIEFKTEADAEKTFEEKQ 450

Query: 363 GRIVGSKPL 371
           G  +  + +
Sbjct: 451 GTEIDGRSI 459



 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 7/93 (7%)

Query: 4   GEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGY 63
           G PN   +  K     L+V  L  D TE+ L + F   G +R  RI  D  T S  G+G+
Sbjct: 562 GSPNARSQPSK----TLFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFGF 614

Query: 64  VNFRFPADAEWALNTMNFDLINGKPFRLMWSQP 96
           V+F    DA+ A   M    I+G    L W++P
Sbjct: 615 VDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 647


>gi|115511032 ELAV (embryonic lethal, abnormal vision,
           Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
          Length = 359

 Score = 90.1 bits (222), Expect = 3e-18
 Identities = 80/320 (25%), Positives = 150/320 (46%), Gaps = 61/320 (19%)

Query: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWH 164
           N+ +  L +++    L  LF + G I SCK+V D     S GY +V++     A +AI  
Sbjct: 40  NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99

Query: 165 MNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP 224
           +NG+RL  + + V    +    +A +R        N++V  +   +  ++L++LF +YG 
Sbjct: 100 LNGLRLQTKTIKVS---YARPSSASIRD------ANLYVSGLPKTMTQKELEQLFSQYGR 150

Query: 225 TESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDG-----KVLYVGRAQKKI 278
             + +++ D  +G S+G GF+R++    A++A+  L+G+   G      V +     +K 
Sbjct: 151 IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKT 210

Query: 279 ER--LAEL----RRRF--------ERLRLK---------EKSRP--------------PG 301
            +  L++L     RR+        +R RL          ++  P              PG
Sbjct: 211 NQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPG 270

Query: 302 VP-----IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEA 354
            P     I++ NL    ++  L + F  FG+++  KV+ +    + KGFG V  ++++EA
Sbjct: 271 HPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEA 330

Query: 355 TKAVDEMNGRIVGSKPLHVT 374
             A+  +NG  +G + L V+
Sbjct: 331 AMAIASLNGYRLGDRVLQVS 350



 Score = 82.0 bits (201), Expect = 8e-16
 Identities = 46/153 (30%), Positives = 81/153 (52%), Gaps = 4/153 (2%)

Query: 17  KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76
           K  L V  L  ++T++ L   F   G +   ++ RD +T   LGYG+VN+  P DAE A+
Sbjct: 38  KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97

Query: 77  NTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
           NT+N   +  K  ++ +++P     +    N+++  L K++  + L  LFS +G I++ +
Sbjct: 98  NTLNGLRLQTKTIKVSYARPSSASIRD--ANLYVSGLPKTMTQKELEQLFSQYGRIITSR 155

Query: 137 VVCDD--NGSKGYAYVHFDSLAAANRAIWHMNG 167
           ++ D     S+G  ++ FD    A  AI  +NG
Sbjct: 156 ILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188



 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 46/169 (27%), Positives = 86/169 (50%), Gaps = 21/169 (12%)

Query: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVL 257
           TN+ V  +  ++  E+LK LF   G  ES K++RD  +G+S G+GFV Y   + A+KA+ 
Sbjct: 39  TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98

Query: 258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEK 317
            L+G  +  K + V  A+     + +                    +Y+  L +T+  ++
Sbjct: 99  TLNGLRLQTKTIKVSYARPSSASIRDAN------------------LYVSGLPKTMTQKE 140

Query: 318 LKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGR 364
           L++ FS +G I  ++++++   G  +G G + F    EA +A+  +NG+
Sbjct: 141 LEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189



 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDL 259
           +FV N+  D D+  L ++F  +G   +VKVIRD  + K KGFGFV    ++ A  A+  L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337

Query: 260 HGKSIDGKVLYVGRAQKKIER 280
           +G  +  +VL V     K  +
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358



 Score = 36.2 bits (82), Expect = 0.051
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
           ++V +L PD  E +L++ F P G +   ++ RD  T    G+G+V      +A  A+ ++
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337

Query: 80  N 80
           N
Sbjct: 338 N 338


>gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
          Length = 360

 Score = 88.2 bits (217), Expect = 1e-17
 Identities = 73/327 (22%), Positives = 150/327 (45%), Gaps = 62/327 (18%)

Query: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWH 164
           N+ +  L +++       LF + G+I SCK+V D     S GY +V++     A++AI  
Sbjct: 40  NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99

Query: 165 MNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP 224
           +NG++L  + + V    +    +A +R        N++V  +   +  +++++LF +YG 
Sbjct: 100 LNGLKLQTKTIKV---SYARPSSASIRD------ANLYVSGLPKTMSQKEMEQLFSQYGR 150

Query: 225 TESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKV--------------- 268
             + +++ D  +G S+G GF+R++    A++A+  L+G+   G                 
Sbjct: 151 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKT 210

Query: 269 -------LYVGRAQK------------KIERLAELR---RRFERLRLKEKSRPPGVP--- 303
                  LY   A++            +++ L  +    +RF  + +   S   GV    
Sbjct: 211 GQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSG 270

Query: 304 --------IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEE 353
                   I++ NL    ++  L + F  FG+++  KV+ +    + KGFG V  ++++E
Sbjct: 271 GAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDE 330

Query: 354 ATKAVDEMNGRIVGSKPLHVTLGQARR 380
           A  A+  +NG  +G + L V+   +++
Sbjct: 331 AAMAIASLNGYRLGERVLQVSFKTSKQ 357



 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 4/153 (2%)

Query: 17  KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76
           K  L V  L  ++T+D     F   G +   ++ RD +T   LGYG+VN+  P DA+ A+
Sbjct: 38  KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97

Query: 77  NTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
           NT+N   +  K  ++ +++P     +    N+++  L K++  + +  LFS +G I++ +
Sbjct: 98  NTLNGLKLQTKTIKVSYARPSSASIRD--ANLYVSGLPKTMSQKEMEQLFSQYGRIITSR 155

Query: 137 VVCDD--NGSKGYAYVHFDSLAAANRAIWHMNG 167
           ++ D     S+G  ++ FD    A  AI  +NG
Sbjct: 156 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188



 Score = 72.0 bits (175), Expect = 8e-13
 Identities = 46/176 (26%), Positives = 87/176 (49%), Gaps = 25/176 (14%)

Query: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVL 257
           TN+ V  +  ++  ++ K LF   G  ES K++RD  +G+S G+GFV Y     A KA+ 
Sbjct: 39  TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98

Query: 258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEK 317
            L+G  +  K + V  A+     + +                    +Y+  L +T++ ++
Sbjct: 99  TLNGLKLQTKTIKVSYARPSSASIRDAN------------------LYVSGLPKTMSQKE 140

Query: 318 LKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPL 371
           +++ FS +G I  ++++++   G  +G G + F    EA +A+  +NG+    KPL
Sbjct: 141 MEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ----KPL 192



 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHM 165
           IF+ NL    D   L+ LF  FG + + KV+ D   N  KG+ +V   +   A  AI  +
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338

Query: 166 NGVRLNNRQVYVGRFKFPEERAA 188
           NG RL  R + V  FK  ++  A
Sbjct: 339 NGYRLGERVLQVS-FKTSKQHKA 360



 Score = 36.2 bits (82), Expect = 0.051
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
           ++V +L P+  E +L++ F P G +   ++ RD  T    G+G+V      +A  A+ ++
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338

Query: 80  N 80
           N
Sbjct: 339 N 339


>gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens]
          Length = 369

 Score = 87.0 bits (214), Expect = 2e-17
 Identities = 76/320 (23%), Positives = 142/320 (44%), Gaps = 61/320 (19%)

Query: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWH 164
           N+ +  L +++       LF + G I SCK+V D     S GY +V++     A +AI  
Sbjct: 50  NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 109

Query: 165 MNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP 224
           +NG+RL  + + V    +    +A +R        N++V  +   +  ++L++LF +YG 
Sbjct: 110 LNGLRLQTKTIKVS---YARPSSASIRD------ANLYVSGLPKTMTQKELEQLFSQYGR 160

Query: 225 TESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV------GRAQKK 277
             + +++ D  +G S+G GF+R++    A++A+  L+G+   G    +        +QK 
Sbjct: 161 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKS 220

Query: 278 IERL-------------AELRRRFERLRLKE--------KSRPP---------------- 300
            + L               L  + +R RL          K   P                
Sbjct: 221 SQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPG 280

Query: 301 ----GVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEA 354
               G  I++ NL    ++  L + F  FG+++  KV+ +    + KGFG V  ++++EA
Sbjct: 281 HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEA 340

Query: 355 TKAVDEMNGRIVGSKPLHVT 374
             A+  +NG  +G + L V+
Sbjct: 341 AMAIASLNGYRLGDRVLQVS 360



 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 4/164 (2%)

Query: 6   PNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVN 65
           P   G      K  L V  L  ++T++     F   G +   ++ RD +T   LGYG+VN
Sbjct: 37  PMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVN 96

Query: 66  FRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYL 125
           +  P DAE A+NT+N   +  K  ++ +++P     +    N+++  L K++  + L  L
Sbjct: 97  YIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD--ANLYVSGLPKTMTQKELEQL 154

Query: 126 FSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNG 167
           FS +G I++ +++ D     S+G  ++ FD    A  AI  +NG
Sbjct: 155 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 198



 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 44/169 (26%), Positives = 85/169 (50%), Gaps = 21/169 (12%)

Query: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVL 257
           TN+ V  +  ++  E+ + LF   G  ES K++RD  +G+S G+GFV Y   + A+KA+ 
Sbjct: 49  TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 108

Query: 258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEK 317
            L+G  +  K + V  A+     + +                    +Y+  L +T+  ++
Sbjct: 109 TLNGLRLQTKTIKVSYARPSSASIRDAN------------------LYVSGLPKTMTQKE 150

Query: 318 LKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGR 364
           L++ FS +G I  ++++++   G  +G G + F    EA +A+  +NG+
Sbjct: 151 LEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 199



 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDL 259
           +FV N+  D D+  L +LF  +G   +VKVIRD  + K KGFGFV    ++ A  A+  L
Sbjct: 288 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 347

Query: 260 HGKSIDGKVLYVGRAQKKIER 280
           +G  +  +VL V     K  +
Sbjct: 348 NGYRLGDRVLQVSFKTNKAHK 368



 Score = 36.2 bits (82), Expect = 0.051
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
           ++V +L PD  E +L++ F P G +   ++ RD  T    G+G+V      +A  A+ ++
Sbjct: 288 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 347

Query: 80  N 80
           N
Sbjct: 348 N 348


>gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens]
          Length = 366

 Score = 87.0 bits (214), Expect = 2e-17
 Identities = 76/320 (23%), Positives = 142/320 (44%), Gaps = 61/320 (19%)

Query: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWH 164
           N+ +  L +++       LF + G I SCK+V D     S GY +V++     A +AI  
Sbjct: 47  NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106

Query: 165 MNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP 224
           +NG+RL  + + V    +    +A +R        N++V  +   +  ++L++LF +YG 
Sbjct: 107 LNGLRLQTKTIKVS---YARPSSASIRD------ANLYVSGLPKTMTQKELEQLFSQYGR 157

Query: 225 TESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV------GRAQKK 277
             + +++ D  +G S+G GF+R++    A++A+  L+G+   G    +        +QK 
Sbjct: 158 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKS 217

Query: 278 IERL-------------AELRRRFERLRLKE--------KSRPP---------------- 300
            + L               L  + +R RL          K   P                
Sbjct: 218 SQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPG 277

Query: 301 ----GVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEA 354
               G  I++ NL    ++  L + F  FG+++  KV+ +    + KGFG V  ++++EA
Sbjct: 278 HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEA 337

Query: 355 TKAVDEMNGRIVGSKPLHVT 374
             A+  +NG  +G + L V+
Sbjct: 338 AMAIASLNGYRLGDRVLQVS 357



 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 4/164 (2%)

Query: 6   PNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVN 65
           P   G      K  L V  L  ++T++     F   G +   ++ RD +T   LGYG+VN
Sbjct: 34  PMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVN 93

Query: 66  FRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYL 125
           +  P DAE A+NT+N   +  K  ++ +++P     +    N+++  L K++  + L  L
Sbjct: 94  YIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD--ANLYVSGLPKTMTQKELEQL 151

Query: 126 FSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNG 167
           FS +G I++ +++ D     S+G  ++ FD    A  AI  +NG
Sbjct: 152 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195



 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 44/169 (26%), Positives = 85/169 (50%), Gaps = 21/169 (12%)

Query: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVL 257
           TN+ V  +  ++  E+ + LF   G  ES K++RD  +G+S G+GFV Y   + A+KA+ 
Sbjct: 46  TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105

Query: 258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEK 317
            L+G  +  K + V  A+     + +                    +Y+  L +T+  ++
Sbjct: 106 TLNGLRLQTKTIKVSYARPSSASIRDAN------------------LYVSGLPKTMTQKE 147

Query: 318 LKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGR 364
           L++ FS +G I  ++++++   G  +G G + F    EA +A+  +NG+
Sbjct: 148 LEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196



 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDL 259
           +FV N+  D D+  L +LF  +G   +VKVIRD  + K KGFGFV    ++ A  A+  L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344

Query: 260 HGKSIDGKVLYVGRAQKKIER 280
           +G  +  +VL V     K  +
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365



 Score = 36.2 bits (82), Expect = 0.051
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
           ++V +L PD  E +L++ F P G +   ++ RD  T    G+G+V      +A  A+ ++
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344

Query: 80  N 80
           N
Sbjct: 345 N 345


>gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens]
          Length = 383

 Score = 87.0 bits (214), Expect = 2e-17
 Identities = 76/320 (23%), Positives = 142/320 (44%), Gaps = 61/320 (19%)

Query: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWH 164
           N+ +  L +++       LF + G I SCK+V D     S GY +V++     A +AI  
Sbjct: 64  NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 123

Query: 165 MNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP 224
           +NG+RL  + + V    +    +A +R        N++V  +   +  ++L++LF +YG 
Sbjct: 124 LNGLRLQTKTIKVS---YARPSSASIRD------ANLYVSGLPKTMTQKELEQLFSQYGR 174

Query: 225 TESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV------GRAQKK 277
             + +++ D  +G S+G GF+R++    A++A+  L+G+   G    +        +QK 
Sbjct: 175 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKS 234

Query: 278 IERL-------------AELRRRFERLRLKE--------KSRPP---------------- 300
            + L               L  + +R RL          K   P                
Sbjct: 235 SQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPG 294

Query: 301 ----GVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEA 354
               G  I++ NL    ++  L + F  FG+++  KV+ +    + KGFG V  ++++EA
Sbjct: 295 HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEA 354

Query: 355 TKAVDEMNGRIVGSKPLHVT 374
             A+  +NG  +G + L V+
Sbjct: 355 AMAIASLNGYRLGDRVLQVS 374



 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 4/164 (2%)

Query: 6   PNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVN 65
           P   G      K  L V  L  ++T++     F   G +   ++ RD +T   LGYG+VN
Sbjct: 51  PMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVN 110

Query: 66  FRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYL 125
           +  P DAE A+NT+N   +  K  ++ +++P     +    N+++  L K++  + L  L
Sbjct: 111 YIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD--ANLYVSGLPKTMTQKELEQL 168

Query: 126 FSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNG 167
           FS +G I++ +++ D     S+G  ++ FD    A  AI  +NG
Sbjct: 169 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 212



 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 44/169 (26%), Positives = 85/169 (50%), Gaps = 21/169 (12%)

Query: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVL 257
           TN+ V  +  ++  E+ + LF   G  ES K++RD  +G+S G+GFV Y   + A+KA+ 
Sbjct: 63  TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 122

Query: 258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEK 317
            L+G  +  K + V  A+     + +                    +Y+  L +T+  ++
Sbjct: 123 TLNGLRLQTKTIKVSYARPSSASIRDAN------------------LYVSGLPKTMTQKE 164

Query: 318 LKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGR 364
           L++ FS +G I  ++++++   G  +G G + F    EA +A+  +NG+
Sbjct: 165 LEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 213



 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDL 259
           +FV N+  D D+  L +LF  +G   +VKVIRD  + K KGFGFV    ++ A  A+  L
Sbjct: 302 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 361

Query: 260 HGKSIDGKVLYVGRAQKKIER 280
           +G  +  +VL V     K  +
Sbjct: 362 NGYRLGDRVLQVSFKTNKAHK 382



 Score = 36.2 bits (82), Expect = 0.051
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
           ++V +L PD  E +L++ F P G +   ++ RD  T    G+G+V      +A  A+ ++
Sbjct: 302 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 361

Query: 80  N 80
           N
Sbjct: 362 N 362


>gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens]
          Length = 366

 Score = 87.0 bits (214), Expect = 2e-17
 Identities = 76/320 (23%), Positives = 142/320 (44%), Gaps = 61/320 (19%)

Query: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWH 164
           N+ +  L +++       LF + G I SCK+V D     S GY +V++     A +AI  
Sbjct: 47  NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106

Query: 165 MNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP 224
           +NG+RL  + + V    +    +A +R        N++V  +   +  ++L++LF +YG 
Sbjct: 107 LNGLRLQTKTIKVS---YARPSSASIRD------ANLYVSGLPKTMTQKELEQLFSQYGR 157

Query: 225 TESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV------GRAQKK 277
             + +++ D  +G S+G GF+R++    A++A+  L+G+   G    +        +QK 
Sbjct: 158 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKS 217

Query: 278 IERL-------------AELRRRFERLRLKE--------KSRPP---------------- 300
            + L               L  + +R RL          K   P                
Sbjct: 218 SQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPG 277

Query: 301 ----GVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEA 354
               G  I++ NL    ++  L + F  FG+++  KV+ +    + KGFG V  ++++EA
Sbjct: 278 HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEA 337

Query: 355 TKAVDEMNGRIVGSKPLHVT 374
             A+  +NG  +G + L V+
Sbjct: 338 AMAIASLNGYRLGDRVLQVS 357



 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 4/164 (2%)

Query: 6   PNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVN 65
           P   G      K  L V  L  ++T++     F   G +   ++ RD +T   LGYG+VN
Sbjct: 34  PMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVN 93

Query: 66  FRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYL 125
           +  P DAE A+NT+N   +  K  ++ +++P     +    N+++  L K++  + L  L
Sbjct: 94  YIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD--ANLYVSGLPKTMTQKELEQL 151

Query: 126 FSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNG 167
           FS +G I++ +++ D     S+G  ++ FD    A  AI  +NG
Sbjct: 152 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195



 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 44/169 (26%), Positives = 85/169 (50%), Gaps = 21/169 (12%)

Query: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVL 257
           TN+ V  +  ++  E+ + LF   G  ES K++RD  +G+S G+GFV Y   + A+KA+ 
Sbjct: 46  TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105

Query: 258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEK 317
            L+G  +  K + V  A+     + +                    +Y+  L +T+  ++
Sbjct: 106 TLNGLRLQTKTIKVSYARPSSASIRDAN------------------LYVSGLPKTMTQKE 147

Query: 318 LKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGR 364
           L++ FS +G I  ++++++   G  +G G + F    EA +A+  +NG+
Sbjct: 148 LEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196



 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDL 259
           +FV N+  D D+  L +LF  +G   +VKVIRD  + K KGFGFV    ++ A  A+  L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344

Query: 260 HGKSIDGKVLYVGRAQKKIER 280
           +G  +  +VL V     K  +
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365



 Score = 36.2 bits (82), Expect = 0.051
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
           ++V +L PD  E +L++ F P G +   ++ RD  T    G+G+V      +A  A+ ++
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344

Query: 80  N 80
           N
Sbjct: 345 N 345


>gi|209862867 poly-U binding splicing factor 60KDa isoform c [Homo
           sapiens]
          Length = 516

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 58/200 (29%), Positives = 101/200 (50%), Gaps = 22/200 (11%)

Query: 183 PEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGF 241
           P +  A  R R  A    V+V +I  ++ ++ +++ F  +GP +S+ +  D+ + K KGF
Sbjct: 70  PLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGF 129

Query: 242 GFVRYETHEAAQKAVLDLHGKSIDGKVLYVGR------AQKKIERLAELRRRFERLRLKE 295
            FV YE  EAAQ A+  ++   + G+ + VGR      AQ  I++LAE  R F R     
Sbjct: 130 AFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNR----- 184

Query: 296 KSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEE 353
                   IY+ ++ + ++D+ +K  F +FG I    +  +   G+ KG+G + +   + 
Sbjct: 185 --------IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQS 236

Query: 354 ATKAVDEMNGRIVGSKPLHV 373
           +  AV  MN   +G + L V
Sbjct: 237 SQDAVSSMNLFDLGGQYLRV 256



 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 56/208 (26%), Positives = 99/208 (47%), Gaps = 10/208 (4%)

Query: 73  EWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVG-NIFIKNLDKSIDNRALFYLFSAFGN 131
           + A  TM F    G P   + S    R R   +   +++ ++   +    +   F+ FG 
Sbjct: 56  QMAAVTMGF----GDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGP 111

Query: 132 ILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKF--PEERA 187
           I S  +  D      KG+A+V ++   AA  A+  MN V L  R + VGR       +  
Sbjct: 112 IKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPI 171

Query: 188 AEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRY 246
            +    +   F  ++V ++  D+ D+ +K +F  +G  +S  + RD  +GK KG+GF+ Y
Sbjct: 172 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 231

Query: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRA 274
           E  +++Q AV  ++   + G+ L VG+A
Sbjct: 232 EKAQSSQDAVSSMNLFDLGGQYLRVGKA 259



 Score = 70.1 bits (170), Expect = 3e-12
 Identities = 51/201 (25%), Positives = 97/201 (48%), Gaps = 18/201 (8%)

Query: 1   MGSGEP-----NPAGKKKKYLK--AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDP 53
           MG G+P     + A ++++ L     +YVG +  ++ ED + + F P GP++   +  D 
Sbjct: 62  MGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDS 121

Query: 54  VTRSPLGYGYVNFRFPADAEWALNTMNFDLIN------GKPFRLMWSQP-DDRLRKS--G 104
           VT    G+ +V +  P  A+ AL  MN  ++       G+P  +  +QP  D+L +    
Sbjct: 122 VTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARA 181

Query: 105 VGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGS--KGYAYVHFDSLAAANRAI 162
              I++ ++ + + +  +  +F AFG I SC +  D      KGY ++ ++   ++  A+
Sbjct: 182 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAV 241

Query: 163 WHMNGVRLNNRQVYVGRFKFP 183
             MN   L  + + VG+   P
Sbjct: 242 SSMNLFDLGGQYLRVGKAVTP 262


>gi|17978512 poly-U binding splicing factor 60KDa isoform a [Homo
           sapiens]
          Length = 559

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 58/200 (29%), Positives = 101/200 (50%), Gaps = 22/200 (11%)

Query: 183 PEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGF 241
           P +  A  R R  A    V+V +I  ++ ++ +++ F  +GP +S+ +  D+ + K KGF
Sbjct: 113 PLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGF 172

Query: 242 GFVRYETHEAAQKAVLDLHGKSIDGKVLYVGR------AQKKIERLAELRRRFERLRLKE 295
            FV YE  EAAQ A+  ++   + G+ + VGR      AQ  I++LAE  R F R     
Sbjct: 173 AFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNR----- 227

Query: 296 KSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEE 353
                   IY+ ++ + ++D+ +K  F +FG I    +  +   G+ KG+G + +   + 
Sbjct: 228 --------IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQS 279

Query: 354 ATKAVDEMNGRIVGSKPLHV 373
           +  AV  MN   +G + L V
Sbjct: 280 SQDAVSSMNLFDLGGQYLRV 299



 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 56/208 (26%), Positives = 99/208 (47%), Gaps = 10/208 (4%)

Query: 73  EWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVG-NIFIKNLDKSIDNRALFYLFSAFGN 131
           + A  TM F    G P   + S    R R   +   +++ ++   +    +   F+ FG 
Sbjct: 99  QMAAVTMGF----GDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGP 154

Query: 132 ILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKF--PEERA 187
           I S  +  D      KG+A+V ++   AA  A+  MN V L  R + VGR       +  
Sbjct: 155 IKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPI 214

Query: 188 AEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRY 246
            +    +   F  ++V ++  D+ D+ +K +F  +G  +S  + RD  +GK KG+GF+ Y
Sbjct: 215 IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEY 274

Query: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRA 274
           E  +++Q AV  ++   + G+ L VG+A
Sbjct: 275 EKAQSSQDAVSSMNLFDLGGQYLRVGKA 302



 Score = 70.1 bits (170), Expect = 3e-12
 Identities = 51/201 (25%), Positives = 97/201 (48%), Gaps = 18/201 (8%)

Query: 1   MGSGEP-----NPAGKKKKYLK--AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDP 53
           MG G+P     + A ++++ L     +YVG +  ++ ED + + F P GP++   +  D 
Sbjct: 105 MGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDS 164

Query: 54  VTRSPLGYGYVNFRFPADAEWALNTMNFDLIN------GKPFRLMWSQP-DDRLRKS--G 104
           VT    G+ +V +  P  A+ AL  MN  ++       G+P  +  +QP  D+L +    
Sbjct: 165 VTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARA 224

Query: 105 VGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGS--KGYAYVHFDSLAAANRAI 162
              I++ ++ + + +  +  +F AFG I SC +  D      KGY ++ ++   ++  A+
Sbjct: 225 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAV 284

Query: 163 WHMNGVRLNNRQVYVGRFKFP 183
             MN   L  + + VG+   P
Sbjct: 285 SSMNLFDLGGQYLRVGKAVTP 305


>gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
          Length = 367

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 74/334 (22%), Positives = 145/334 (43%), Gaps = 69/334 (20%)

Query: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWH 164
           N+ +  L +++       LF + G+I SCK+V D     S GY +V++     A++AI  
Sbjct: 40  NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99

Query: 165 MNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP 224
           +NG++L  + + V    +    +A +R        N++V  +   +  +++++LF +YG 
Sbjct: 100 LNGLKLQTKTIKV---SYARPSSASIRD------ANLYVSGLPKTMSQKEMEQLFSQYGR 150

Query: 225 TESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGK------------------SID 265
             + +++ D  +G S+G GF+R++    A++A+  L+G+                     
Sbjct: 151 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKT 210

Query: 266 GKVLYVGRAQKKIERLA--------------------------ELRRRFERLRLKEKSRP 299
           G+ L     Q    R A                           L  RF  + +   S  
Sbjct: 211 GQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKSPLSLIARFSPIAIDGMSGL 270

Query: 300 PGVP-----------IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVV 346
            GV            I++ NL    ++  L + F  FG+++  KV+ +    + KGFG V
Sbjct: 271 AGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 330

Query: 347 CFSSFEEATKAVDEMNGRIVGSKPLHVTLGQARR 380
             ++++EA  A+  +NG  +G + L V+   +++
Sbjct: 331 TMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQ 364



 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 4/153 (2%)

Query: 17  KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76
           K  L V  L  ++T+D     F   G +   ++ RD +T   LGYG+VN+  P DA+ A+
Sbjct: 38  KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97

Query: 77  NTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
           NT+N   +  K  ++ +++P     +    N+++  L K++  + +  LFS +G I++ +
Sbjct: 98  NTLNGLKLQTKTIKVSYARPSSASIRD--ANLYVSGLPKTMSQKEMEQLFSQYGRIITSR 155

Query: 137 VVCDD--NGSKGYAYVHFDSLAAANRAIWHMNG 167
           ++ D     S+G  ++ FD    A  AI  +NG
Sbjct: 156 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188



 Score = 72.0 bits (175), Expect = 8e-13
 Identities = 46/176 (26%), Positives = 87/176 (49%), Gaps = 25/176 (14%)

Query: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVL 257
           TN+ V  +  ++  ++ K LF   G  ES K++RD  +G+S G+GFV Y     A KA+ 
Sbjct: 39  TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98

Query: 258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEK 317
            L+G  +  K + V  A+     + +                    +Y+  L +T++ ++
Sbjct: 99  TLNGLKLQTKTIKVSYARPSSASIRDAN------------------LYVSGLPKTMSQKE 140

Query: 318 LKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPL 371
           +++ FS +G I  ++++++   G  +G G + F    EA +A+  +NG+    KPL
Sbjct: 141 MEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ----KPL 192



 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHM 165
           IF+ NL    D   L+ LF  FG + + KV+ D   N  KG+ +V   +   A  AI  +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345

Query: 166 NGVRLNNRQVYVGRFKFPEERAA 188
           NG RL  R + V  FK  ++  A
Sbjct: 346 NGYRLGERVLQVS-FKTSKQHKA 367



 Score = 36.2 bits (82), Expect = 0.051
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
           ++V +L P+  E +L++ F P G +   ++ RD  T    G+G+V      +A  A+ ++
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345

Query: 80  N 80
           N
Sbjct: 346 N 346


>gi|17298690 poly-U binding splicing factor 60KDa isoform b [Homo
           sapiens]
          Length = 542

 Score = 83.2 bits (204), Expect = 4e-16
 Identities = 57/195 (29%), Positives = 99/195 (50%), Gaps = 22/195 (11%)

Query: 188 AEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRY 246
           A  R R  A    V+V +I  ++ ++ +++ F  +GP +S+ +  D+ + K KGF FV Y
Sbjct: 101 AAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEY 160

Query: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGR------AQKKIERLAELRRRFERLRLKEKSRPP 300
           E  EAAQ A+  ++   + G+ + VGR      AQ  I++LAE  R F R          
Sbjct: 161 EVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNR---------- 210

Query: 301 GVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAV 358
              IY+ ++ + ++D+ +K  F +FG I    +  +   G+ KG+G + +   + +  AV
Sbjct: 211 ---IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAV 267

Query: 359 DEMNGRIVGSKPLHV 373
             MN   +G + L V
Sbjct: 268 SSMNLFDLGGQYLRV 282



 Score = 76.3 bits (186), Expect = 4e-14
 Identities = 47/172 (27%), Positives = 87/172 (50%), Gaps = 5/172 (2%)

Query: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHM 165
           +++ ++   +    +   F+ FG I S  +  D      KG+A+V ++   AA  A+  M
Sbjct: 114 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 173

Query: 166 NGVRLNNRQVYVGRFKF--PEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYG 223
           N V L  R + VGR       +   +    +   F  ++V ++  D+ D+ +K +F  +G
Sbjct: 174 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 233

Query: 224 PTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274
             +S  + RD  +GK KG+GF+ YE  +++Q AV  ++   + G+ L VG+A
Sbjct: 234 KIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 285



 Score = 68.6 bits (166), Expect = 9e-12
 Identities = 45/175 (25%), Positives = 85/175 (48%), Gaps = 11/175 (6%)

Query: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
           +YVG +  ++ ED + + F P GP++   +  D VT    G+ +V +  P  A+ AL  M
Sbjct: 114 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 173

Query: 80  NFDLIN------GKPFRLMWSQP-DDRLRKS--GVGNIFIKNLDKSIDNRALFYLFSAFG 130
           N  ++       G+P  +  +QP  D+L +       I++ ++ + + +  +  +F AFG
Sbjct: 174 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 233

Query: 131 NILSCKVVCDDNGS--KGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFP 183
            I SC +  D      KGY ++ ++   ++  A+  MN   L  + + VG+   P
Sbjct: 234 KIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 288


>gi|157412270 heterogeneous nuclear ribonucleoprotein M isoform b
           [Homo sapiens]
          Length = 691

 Score = 82.8 bits (203), Expect = 5e-16
 Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 12/178 (6%)

Query: 202 FVKNIGDDIDDEKLKELFCE-YGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
           F+ NI  D+  + LK+L  E  G    V+++ DA GKS+G   V ++  E+ +KA   L+
Sbjct: 74  FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLN 133

Query: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
             S+ G+ L V     K +   E  RR       +K+   G  +++ NLD  +  +KLKE
Sbjct: 134 KHSLSGRPLKV-----KEDPDGEHARR-----AMQKAGRLGSTVFVANLDYKVGWKKLKE 183

Query: 321 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
            FS  G + RA ++ +  G+ +G G V F    EA +A+   NG+++  +P+HV + +
Sbjct: 184 VFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 241



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 2/152 (1%)

Query: 130 GNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAA 188
           G +   +++ D  G S+G A V F    +  +A   +N   L+ R + V      E    
Sbjct: 96  GEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARR 155

Query: 189 EVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYET 248
            ++   R   T VFV N+   +  +KLKE+F   G      ++ D  GKS+G G V +E 
Sbjct: 156 AMQKAGRLGST-VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQ 214

Query: 249 HEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280
              A +A+   +G+ +  + ++V   ++ + +
Sbjct: 215 SIEAVQAISMFNGQLLFDRPMHVKMDERALPK 246



 Score = 45.8 bits (107), Expect = 6e-05
 Identities = 25/72 (34%), Positives = 40/72 (55%)

Query: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNG 363
           I+++NL      + LK++F+  G +  A + ME G+ KG GVV F S E A +A   MNG
Sbjct: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 675

Query: 364 RIVGSKPLHVTL 375
             +  + + V +
Sbjct: 676 MKLSGREIDVRI 687



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 20/166 (12%)

Query: 42  GPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDR-- 99
           G + +  +  D   +S  G   V F+     + A   +N   ++G+P ++    PD    
Sbjct: 96  GEVTYVELLMDAEGKSR-GCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVK-EDPDGEHA 153

Query: 100 ---LRKSGV--GNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFD 153
              ++K+G     +F+ NLD  +  + L  +FS  G ++   ++ D +G S+G   V F+
Sbjct: 154 RRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFE 213

Query: 154 SLAAANRAIWHMNG---------VRLNNRQVYVGRFKFPEERAAEV 190
               A +AI   NG         V+++ R +  G F FP ER  ++
Sbjct: 214 QSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDF-FPPERPQQL 258



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 23/70 (32%), Positives = 38/70 (54%)

Query: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNG 167
           IF++NL      + L   F+  G++L   +  ++  SKG   V F+S   A RA   MNG
Sbjct: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 675

Query: 168 VRLNNRQVYV 177
           ++L+ R++ V
Sbjct: 676 MKLSGREIDV 685



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
           +FV+N+  D   + LK+ F E G       I+  +GKSKG G V++E+ E A++A   ++
Sbjct: 616 IFVRNLPFDFTWKMLKDKFNECGHVLYAD-IKMENGKSKGCGVVKFESPEVAERACRMMN 674

Query: 261 GKSIDGKVLYV 271
           G  + G+ + V
Sbjct: 675 GMKLSGREIDV 685


>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
          Length = 960

 Score = 82.0 bits (201), Expect = 8e-16
 Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 12/188 (6%)

Query: 181 KFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK--- 237
           K  EE   E    +      +F+KN+  D  +EKLKE+F + G  +S  + +  +     
Sbjct: 712 KMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVL 771

Query: 238 -SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEK 296
            S GFGFV Y   E AQKA+  L G  +DG  L V  +++  +    L R+ +  R +  
Sbjct: 772 LSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTT 831

Query: 297 SRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRA---KVMMEVGQGKGFGVVCFSSFEE 353
           S+     I ++N+    +  +++E FS+FG +      K M   G  +GFG V F + ++
Sbjct: 832 SK-----ILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQD 886

Query: 354 ATKAVDEM 361
           A +A + +
Sbjct: 887 AKRAFNAL 894



 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 50/213 (23%), Positives = 97/213 (45%), Gaps = 24/213 (11%)

Query: 178 GRFKFPEERAAEVRT---RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA 234
           G+ + PE RA   +    ++  T   V ++    ++ ++ + E      P  +++++R+A
Sbjct: 270 GKKRPPEARAETEKPANQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPV-AIRIVRNA 328

Query: 235 SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGR---------AQKKIERLAE-- 283
            G   G+ FV +   E  ++A L  + + + G+ + V R         A K   +  +  
Sbjct: 329 HGNKTGYIFVDFSNEEEVKQA-LKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGR 387

Query: 284 -LRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQG 340
            L    E   L E  R     ++++NL  T  +E L++ FS +G +S     ++    + 
Sbjct: 388 ILGENEEEEDLAESGR-----LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKP 442

Query: 341 KGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373
           KGF  + F   E A KA  E++G++   + LHV
Sbjct: 443 KGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHV 475



 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 5/89 (5%)

Query: 294 KEKSRPPGVPIYIKNLDETINDEKLKEEFSSFG-----SISRAKVMMEVGQGKGFGVVCF 348
           +E+   PG  ++IKNL+    +EKLKE FS  G     SIS+ K    V    GFG V +
Sbjct: 722 EEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEY 781

Query: 349 SSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
              E+A KA+ ++ G +V    L V + +
Sbjct: 782 RKPEQAQKALKQLQGHVVDGHKLEVRISE 810



 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 23/174 (13%)

Query: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPL---GYGYVNFRFPADAEWAL 76
           L++ +L+ D TE+ L + F   G ++   I +       L   G+G+V +R P  A+ AL
Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791

Query: 77  NTMNFDLINGKPFRLMWSQPDDR-----------LRKSGVGNIFIKNLDKSIDNRALFYL 125
             +   +++G    +  S+   +            RK     I ++N+     +R +  L
Sbjct: 792 KQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIREL 851

Query: 126 FSAFGNILSCKVVCDDNGS---KGYAYVHFDSLAAANRAI------WHMNGVRL 170
           FS FG + + ++     G+   +G+ +V F +   A RA        H+ G RL
Sbjct: 852 FSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRL 905



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 19/67 (28%), Positives = 36/67 (53%)

Query: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLD 258
           + + VKN+ + + +E+ ++LF  +G      +     GK + FGF+ +++ E AQKA   
Sbjct: 2   SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKH 61

Query: 259 LHGKSID 265
            +   ID
Sbjct: 62  FNKSFID 68



 Score = 38.5 bits (88), Expect = 0.010
 Identities = 21/73 (28%), Positives = 36/73 (49%)

Query: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
           L+V +L    TE+ L K F   GPL       D +T+ P G+ ++ F FP  A  A + +
Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEV 463

Query: 80  NFDLINGKPFRLM 92
           +  +  G+   ++
Sbjct: 464 DGQVFQGRMLHVL 476



 Score = 37.0 bits (84), Expect = 0.030
 Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKV-MMEVGQGKGFGVVCFSSFEEATKAVDEMN 362
           + +KNL   + +E+ ++ F++FG+++   +   + G+ + FG + F S EEA KA    N
Sbjct: 4   LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHFN 63

Query: 363 GRIVGSKPLHV 373
              + +  + V
Sbjct: 64  KSFIDTSRITV 74



 Score = 32.3 bits (72), Expect = 0.73
 Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 105 VGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGS-KGYAYVHFDSLAAANRAIW 163
           +  + +KNL   +       LF+AFG +  C +    +G  + + ++ F S   A +A  
Sbjct: 1   MSRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQK 60

Query: 164 HMNGVRLNNRQVYV 177
           H N   ++  ++ V
Sbjct: 61  HFNKSFIDTSRITV 74


>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
          Length = 960

 Score = 82.0 bits (201), Expect = 8e-16
 Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 12/188 (6%)

Query: 181 KFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK--- 237
           K  EE   E    +      +F+KN+  D  +EKLKE+F + G  +S  + +  +     
Sbjct: 712 KMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVL 771

Query: 238 -SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEK 296
            S GFGFV Y   E AQKA+  L G  +DG  L V  +++  +    L R+ +  R +  
Sbjct: 772 LSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTT 831

Query: 297 SRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRA---KVMMEVGQGKGFGVVCFSSFEE 353
           S+     I ++N+    +  +++E FS+FG +      K M   G  +GFG V F + ++
Sbjct: 832 SK-----ILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQD 886

Query: 354 ATKAVDEM 361
           A +A + +
Sbjct: 887 AKRAFNAL 894



 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 50/213 (23%), Positives = 97/213 (45%), Gaps = 24/213 (11%)

Query: 178 GRFKFPEERAAEVRT---RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA 234
           G+ + PE RA   +    ++  T   V ++    ++ ++ + E      P  +++++R+A
Sbjct: 270 GKKRPPEARAETEKPANQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPV-AIRIVRNA 328

Query: 235 SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGR---------AQKKIERLAE-- 283
            G   G+ FV +   E  ++A L  + + + G+ + V R         A K   +  +  
Sbjct: 329 HGNKTGYIFVDFSNEEEVKQA-LKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGR 387

Query: 284 -LRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQG 340
            L    E   L E  R     ++++NL  T  +E L++ FS +G +S     ++    + 
Sbjct: 388 ILGENEEEEDLAESGR-----LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKP 442

Query: 341 KGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373
           KGF  + F   E A KA  E++G++   + LHV
Sbjct: 443 KGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHV 475



 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 5/89 (5%)

Query: 294 KEKSRPPGVPIYIKNLDETINDEKLKEEFSSFG-----SISRAKVMMEVGQGKGFGVVCF 348
           +E+   PG  ++IKNL+    +EKLKE FS  G     SIS+ K    V    GFG V +
Sbjct: 722 EEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEY 781

Query: 349 SSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
              E+A KA+ ++ G +V    L V + +
Sbjct: 782 RKPEQAQKALKQLQGHVVDGHKLEVRISE 810



 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 23/174 (13%)

Query: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPL---GYGYVNFRFPADAEWAL 76
           L++ +L+ D TE+ L + F   G ++   I +       L   G+G+V +R P  A+ AL
Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791

Query: 77  NTMNFDLINGKPFRLMWSQPDDR-----------LRKSGVGNIFIKNLDKSIDNRALFYL 125
             +   +++G    +  S+   +            RK     I ++N+     +R +  L
Sbjct: 792 KQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIREL 851

Query: 126 FSAFGNILSCKVVCDDNGS---KGYAYVHFDSLAAANRAI------WHMNGVRL 170
           FS FG + + ++     G+   +G+ +V F +   A RA        H+ G RL
Sbjct: 852 FSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRL 905



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 19/67 (28%), Positives = 36/67 (53%)

Query: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLD 258
           + + VKN+ + + +E+ ++LF  +G      +     GK + FGF+ +++ E AQKA   
Sbjct: 2   SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKH 61

Query: 259 LHGKSID 265
            +   ID
Sbjct: 62  FNKSFID 68



 Score = 38.5 bits (88), Expect = 0.010
 Identities = 21/73 (28%), Positives = 36/73 (49%)

Query: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
           L+V +L    TE+ L K F   GPL       D +T+ P G+ ++ F FP  A  A + +
Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEV 463

Query: 80  NFDLINGKPFRLM 92
           +  +  G+   ++
Sbjct: 464 DGQVFQGRMLHVL 476



 Score = 37.0 bits (84), Expect = 0.030
 Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKV-MMEVGQGKGFGVVCFSSFEEATKAVDEMN 362
           + +KNL   + +E+ ++ F++FG+++   +   + G+ + FG + F S EEA KA    N
Sbjct: 4   LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHFN 63

Query: 363 GRIVGSKPLHV 373
              + +  + V
Sbjct: 64  KSFIDTSRITV 74



 Score = 32.3 bits (72), Expect = 0.73
 Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 105 VGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGS-KGYAYVHFDSLAAANRAIW 163
           +  + +KNL   +       LF+AFG +  C +    +G  + + ++ F S   A +A  
Sbjct: 1   MSRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQK 60

Query: 164 HMNGVRLNNRQVYV 177
           H N   ++  ++ V
Sbjct: 61  HFNKSFIDTSRITV 74


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.139    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,703,325
Number of Sequences: 37866
Number of extensions: 655135
Number of successful extensions: 3383
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 1653
Number of HSP's gapped (non-prelim): 1083
length of query: 382
length of database: 18,247,518
effective HSP length: 104
effective length of query: 278
effective length of database: 14,309,454
effective search space: 3978028212
effective search space used: 3978028212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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