Guide to the Human Genome
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Name: LOC100133863 Sequence: fasta or formatted (227aa) NCBI GI: 169217736
Description:

PREDICTED: similar to PDZ domain containing 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         12           1
 C cysteine            2.6          6           1
 D aspartate           7.0         16           1
 E glutamate           7.0         16           3
 F phenylalanine       3.5          8           1
 G glycine             6.2         14           2
 H histidine           2.6          6           1
 I isoleucine          7.0         16           2
 K lysine              7.5         17           2
 L leucine             8.4         19           2
 M methionine          0.9          2           1
 N asparagine          4.8         11           2
 P proline             7.5         17           2
 Q glutamine           3.5          8           1
 R arginine            3.5          8           1
 S serine              8.8         20           2
 T threonine           3.5          8           2
 V valine              6.2         14           2
 W tryptophan          0.4          1           1
 Y tyrosine            3.5          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to PDZ domain containing 1 [Homo... 
PDZK1                 0.738   PDZ domain containing 1 
SLC9A3R2              0.140   solute carrier family 9 isoform 3 regulator 2 isofo...
SLC9A3R2              0.140   solute carrier family 9 isoform 3 regulator 2 isofor...
SLC9A3R1              0.129   sodium/hydrogen exchanger regulatory factor 1 
PDZD3                 0.079   PDZ domain containing 3 
DLG4                  0.079   post-synaptic density protein 95 isoform 1 
DLG4                  0.079   post-synaptic density protein 95 isoform 2 
DLG3                  0.072   synapse-associated protein 102 isoform a 
SNX27                 0.072   sorting nexin family member 27 
DLG2                  0.070   chapsyn-110 isoform 1 
DLG2                  0.070   chapsyn-110 isoform 2 
DLG3                  0.063   synapse-associated protein 102 isoform b 
DLG1                  0.063   discs, large homolog 1 isoform 1 
DLG1                  0.063   discs, large homolog 1 isoform 2 
GRID2IP               0.059   glutamate receptor, ionotropic, delta 2 (Grid2) int...
DLG2                  0.059   chapsyn-110 isoform 3 
ARHGAP21              0.054   Rho GTPase activating protein 21 
MAST1                 0.050   microtubule associated serine/threonine kinase 1 [Ho...
RADIL                 0.050   Rap GTPase interactor 
TJP1                  0.050   tight junction protein 1 isoform b 
TJP1                  0.050   tight junction protein 1 isoform a 
ARHGAP23              0.043   Rho GTPase activating protein 23 
RGS12                 0.043   regulator of G-protein signalling 12 isoform 2 
RGS12                 0.043   regulator of G-protein signalling 12 isoform 1 [Homo...
CYTIP                 0.043   cytohesin 1 interacting protein 
LIN7B                 0.043   lin-7 homolog B 
PTPN13                0.038   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.038   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.038   protein tyrosine phosphatase, non-receptor type 13 i...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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