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Search of human proteins with 169215838
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169215838 PREDICTED: similar to hCG2041320 [Homo sapiens]
(318 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169216044 PREDICTED: similar to hCG2041320 [Homo sapiens] 652 0.0
gi|169215838 PREDICTED: similar to hCG2041320 [Homo sapiens] 652 0.0
gi|169215637 PREDICTED: similar to hCG2041320 [Homo sapiens] 652 0.0
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ... 240 1e-63
gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo ... 240 1e-63
gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo ... 240 1e-63
gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo ... 240 1e-63
gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo s... 240 1e-63
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 234 8e-62
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof... 234 8e-62
gi|47132519 Ras association and pleckstrin homology domains 1 is... 38 0.010
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens] 37 0.018
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 37 0.030
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 37 0.030
gi|126352608 elastin isoform e precursor [Homo sapiens] 36 0.040
gi|126352700 elastin isoform b precursor [Homo sapiens] 36 0.040
gi|126352440 elastin isoform a precursor [Homo sapiens] 36 0.040
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 36 0.052
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 35 0.067
gi|121114296 caudal type homeobox 1 [Homo sapiens] 35 0.067
gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo s... 35 0.088
gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo ... 35 0.088
gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo ... 35 0.088
gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo s... 35 0.088
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 35 0.11
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 35 0.11
gi|38569466 ROD1 regulator of differentiation 1 [Homo sapiens] 35 0.11
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 34 0.15
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 34 0.15
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 34 0.15
>gi|169216044 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 652 bits (1682), Expect = 0.0
Identities = 318/318 (100%), Positives = 318/318 (100%)
Query: 1 MGISAHASKGELVGALLFRKASVSPICIHGTQNHNASSSSFRGQTRPVLLSLGPWAQMFK 60
MGISAHASKGELVGALLFRKASVSPICIHGTQNHNASSSSFRGQTRPVLLSLGPWAQMFK
Sbjct: 1 MGISAHASKGELVGALLFRKASVSPICIHGTQNHNASSSSFRGQTRPVLLSLGPWAQMFK 60
Query: 61 PVCPGKADPGLPPPSLNFGAPAPTPAPHIPASAQLTPAQSISFSGTSGPNRKRLISMAEA 120
PVCPGKADPGLPPPSLNFGAPAPTPAPHIPASAQLTPAQSISFSGTSGPNRKRLISMAEA
Sbjct: 61 PVCPGKADPGLPPPSLNFGAPAPTPAPHIPASAQLTPAQSISFSGTSGPNRKRLISMAEA 120
Query: 121 LRFRLRAGSGGTLELRQLFKELWQSRLWARVARLQQHIDYRMKCILQEGTIFFGIFKAFD 180
LRFRLRAGSGGTLELRQLFKELWQSRLWARVARLQQHIDYRMKCILQEGTIFFGIFKAFD
Sbjct: 121 LRFRLRAGSGGTLELRQLFKELWQSRLWARVARLQQHIDYRMKCILQEGTIFFGIFKAFD 180
Query: 181 KHVNLILCDCDEFRKIKPKNVKQPELEEKHFWGLVLLHGENLVSMTVEGLPPKYTGIARV 240
KHVNLILCDCDEFRKIKPKNVKQPELEEKHFWGLVLLHGENLVSMTVEGLPPKYTGIARV
Sbjct: 181 KHVNLILCDCDEFRKIKPKNVKQPELEEKHFWGLVLLHGENLVSMTVEGLPPKYTGIARV 240
Query: 241 PLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGPSQQVMTPQRRALLEPQHS 300
PLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGPSQQVMTPQRRALLEPQHS
Sbjct: 241 PLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGPSQQVMTPQRRALLEPQHS 300
Query: 301 THQDRGLHPHLLAEQPHL 318
THQDRGLHPHLLAEQPHL
Sbjct: 301 THQDRGLHPHLLAEQPHL 318
>gi|169215838 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 652 bits (1682), Expect = 0.0
Identities = 318/318 (100%), Positives = 318/318 (100%)
Query: 1 MGISAHASKGELVGALLFRKASVSPICIHGTQNHNASSSSFRGQTRPVLLSLGPWAQMFK 60
MGISAHASKGELVGALLFRKASVSPICIHGTQNHNASSSSFRGQTRPVLLSLGPWAQMFK
Sbjct: 1 MGISAHASKGELVGALLFRKASVSPICIHGTQNHNASSSSFRGQTRPVLLSLGPWAQMFK 60
Query: 61 PVCPGKADPGLPPPSLNFGAPAPTPAPHIPASAQLTPAQSISFSGTSGPNRKRLISMAEA 120
PVCPGKADPGLPPPSLNFGAPAPTPAPHIPASAQLTPAQSISFSGTSGPNRKRLISMAEA
Sbjct: 61 PVCPGKADPGLPPPSLNFGAPAPTPAPHIPASAQLTPAQSISFSGTSGPNRKRLISMAEA 120
Query: 121 LRFRLRAGSGGTLELRQLFKELWQSRLWARVARLQQHIDYRMKCILQEGTIFFGIFKAFD 180
LRFRLRAGSGGTLELRQLFKELWQSRLWARVARLQQHIDYRMKCILQEGTIFFGIFKAFD
Sbjct: 121 LRFRLRAGSGGTLELRQLFKELWQSRLWARVARLQQHIDYRMKCILQEGTIFFGIFKAFD 180
Query: 181 KHVNLILCDCDEFRKIKPKNVKQPELEEKHFWGLVLLHGENLVSMTVEGLPPKYTGIARV 240
KHVNLILCDCDEFRKIKPKNVKQPELEEKHFWGLVLLHGENLVSMTVEGLPPKYTGIARV
Sbjct: 181 KHVNLILCDCDEFRKIKPKNVKQPELEEKHFWGLVLLHGENLVSMTVEGLPPKYTGIARV 240
Query: 241 PLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGPSQQVMTPQRRALLEPQHS 300
PLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGPSQQVMTPQRRALLEPQHS
Sbjct: 241 PLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGPSQQVMTPQRRALLEPQHS 300
Query: 301 THQDRGLHPHLLAEQPHL 318
THQDRGLHPHLLAEQPHL
Sbjct: 301 THQDRGLHPHLLAEQPHL 318
>gi|169215637 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 652 bits (1682), Expect = 0.0
Identities = 318/318 (100%), Positives = 318/318 (100%)
Query: 1 MGISAHASKGELVGALLFRKASVSPICIHGTQNHNASSSSFRGQTRPVLLSLGPWAQMFK 60
MGISAHASKGELVGALLFRKASVSPICIHGTQNHNASSSSFRGQTRPVLLSLGPWAQMFK
Sbjct: 1 MGISAHASKGELVGALLFRKASVSPICIHGTQNHNASSSSFRGQTRPVLLSLGPWAQMFK 60
Query: 61 PVCPGKADPGLPPPSLNFGAPAPTPAPHIPASAQLTPAQSISFSGTSGPNRKRLISMAEA 120
PVCPGKADPGLPPPSLNFGAPAPTPAPHIPASAQLTPAQSISFSGTSGPNRKRLISMAEA
Sbjct: 61 PVCPGKADPGLPPPSLNFGAPAPTPAPHIPASAQLTPAQSISFSGTSGPNRKRLISMAEA 120
Query: 121 LRFRLRAGSGGTLELRQLFKELWQSRLWARVARLQQHIDYRMKCILQEGTIFFGIFKAFD 180
LRFRLRAGSGGTLELRQLFKELWQSRLWARVARLQQHIDYRMKCILQEGTIFFGIFKAFD
Sbjct: 121 LRFRLRAGSGGTLELRQLFKELWQSRLWARVARLQQHIDYRMKCILQEGTIFFGIFKAFD 180
Query: 181 KHVNLILCDCDEFRKIKPKNVKQPELEEKHFWGLVLLHGENLVSMTVEGLPPKYTGIARV 240
KHVNLILCDCDEFRKIKPKNVKQPELEEKHFWGLVLLHGENLVSMTVEGLPPKYTGIARV
Sbjct: 181 KHVNLILCDCDEFRKIKPKNVKQPELEEKHFWGLVLLHGENLVSMTVEGLPPKYTGIARV 240
Query: 241 PLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGPSQQVMTPQRRALLEPQHS 300
PLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGPSQQVMTPQRRALLEPQHS
Sbjct: 241 PLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGPSQQVMTPQRRALLEPQHS 300
Query: 301 THQDRGLHPHLLAEQPHL 318
THQDRGLHPHLLAEQPHL
Sbjct: 301 THQDRGLHPHLLAEQPHL 318
>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 240 bits (612), Expect = 1e-63
Identities = 118/141 (83%), Positives = 124/141 (87%)
Query: 152 ARLQQHIDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKPKNVKQPELEEKHF 211
+++ QHIDYRM+CILQ+G IF G FKAFDKH+NLILCDCDEFRKIKPKN KQPE EEK
Sbjct: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRV 66
Query: 212 WGLVLLHGENLVSMTVEGLPPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGG 271
GLVLL GENLVSMTVEG PPK TGIARVPLAGAAGGPGV RAAGRGV AGVPIPQAP G
Sbjct: 67 LGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAG 126
Query: 272 LAGPVPGVGGPSQQVMTPQRR 292
LAGPV GVGGPSQQVMTPQ R
Sbjct: 127 LAGPVRGVGGPSQQVMTPQGR 147
Score = 35.4 bits (80), Expect = 0.067
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 229 GLPPKYTGIARVPLAGAAGGPGVVRAAGRGV----SAGVPIPQAPGGLAGPVPGVGGPSQ 284
G PP G A P A PG+ G + + G PI P G+ P PG+ GP
Sbjct: 173 GTPPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPP 232
Query: 285 QVMTPQR 291
M P R
Sbjct: 233 PGMRPPR 239
>gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 240 bits (612), Expect = 1e-63
Identities = 118/141 (83%), Positives = 124/141 (87%)
Query: 152 ARLQQHIDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKPKNVKQPELEEKHF 211
+++ QHIDYRM+CILQ+G IF G FKAFDKH+NLILCDCDEFRKIKPKN KQPE EEK
Sbjct: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRV 66
Query: 212 WGLVLLHGENLVSMTVEGLPPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGG 271
GLVLL GENLVSMTVEG PPK TGIARVPLAGAAGGPGV RAAGRGV AGVPIPQAP G
Sbjct: 67 LGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAG 126
Query: 272 LAGPVPGVGGPSQQVMTPQRR 292
LAGPV GVGGPSQQVMTPQ R
Sbjct: 127 LAGPVRGVGGPSQQVMTPQGR 147
Score = 35.4 bits (80), Expect = 0.067
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 229 GLPPKYTGIARVPLAGAAGGPGVVRAAGRGV----SAGVPIPQAPGGLAGPVPGVGGPSQ 284
G PP G A P A PG+ G + + G PI P G+ P PG+ GP
Sbjct: 173 GTPPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPP 232
Query: 285 QVMTPQR 291
M P R
Sbjct: 233 PGMRPPR 239
>gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 240 bits (612), Expect = 1e-63
Identities = 118/141 (83%), Positives = 124/141 (87%)
Query: 152 ARLQQHIDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKPKNVKQPELEEKHF 211
+++ QHIDYRM+CILQ+G IF G FKAFDKH+NLILCDCDEFRKIKPKN KQPE EEK
Sbjct: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRV 66
Query: 212 WGLVLLHGENLVSMTVEGLPPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGG 271
GLVLL GENLVSMTVEG PPK TGIARVPLAGAAGGPGV RAAGRGV AGVPIPQAP G
Sbjct: 67 LGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAG 126
Query: 272 LAGPVPGVGGPSQQVMTPQRR 292
LAGPV GVGGPSQQVMTPQ R
Sbjct: 127 LAGPVRGVGGPSQQVMTPQGR 147
Score = 35.4 bits (80), Expect = 0.067
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 229 GLPPKYTGIARVPLAGAAGGPGVVRAAGRGV----SAGVPIPQAPGGLAGPVPGVGGPSQ 284
G PP G A P A PG+ G + + G PI P G+ P PG+ GP
Sbjct: 173 GTPPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPP 232
Query: 285 QVMTPQR 291
M P R
Sbjct: 233 PGMRPPR 239
>gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 240 bits (612), Expect = 1e-63
Identities = 118/141 (83%), Positives = 124/141 (87%)
Query: 152 ARLQQHIDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKPKNVKQPELEEKHF 211
+++ QHIDYRM+CILQ+G IF G FKAFDKH+NLILCDCDEFRKIKPKN KQPE EEK
Sbjct: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRV 66
Query: 212 WGLVLLHGENLVSMTVEGLPPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGG 271
GLVLL GENLVSMTVEG PPK TGIARVPLAGAAGGPGV RAAGRGV AGVPIPQAP G
Sbjct: 67 LGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAG 126
Query: 272 LAGPVPGVGGPSQQVMTPQRR 292
LAGPV GVGGPSQQVMTPQ R
Sbjct: 127 LAGPVRGVGGPSQQVMTPQGR 147
Score = 35.4 bits (80), Expect = 0.067
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 229 GLPPKYTGIARVPLAGAAGGPGVVRAAGRGV----SAGVPIPQAPGGLAGPVPGVGGPSQ 284
G PP G A P A PG+ G + + G PI P G+ P PG+ GP
Sbjct: 173 GTPPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPP 232
Query: 285 QVMTPQR 291
M P R
Sbjct: 233 PGMRPPR 239
>gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 240 bits (612), Expect = 1e-63
Identities = 118/141 (83%), Positives = 124/141 (87%)
Query: 152 ARLQQHIDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKPKNVKQPELEEKHF 211
+++ QHIDYRM+CILQ+G IF G FKAFDKH+NLILCDCDEFRKIKPKN KQPE EEK
Sbjct: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRV 66
Query: 212 WGLVLLHGENLVSMTVEGLPPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGG 271
GLVLL GENLVSMTVEG PPK TGIARVPLAGAAGGPGV RAAGRGV AGVPIPQAP G
Sbjct: 67 LGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAG 126
Query: 272 LAGPVPGVGGPSQQVMTPQRR 292
LAGPV GVGGPSQQVMTPQ R
Sbjct: 127 LAGPVRGVGGPSQQVMTPQGR 147
Score = 35.4 bits (80), Expect = 0.067
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 229 GLPPKYTGIARVPLAGAAGGPGVVRAAGRGV----SAGVPIPQAPGGLAGPVPGVGGPSQ 284
G PP G A P A PG+ G + + G PI P G+ P PG+ GP
Sbjct: 173 GTPPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPP 232
Query: 285 QVMTPQR 291
M P R
Sbjct: 233 PGMRPPR 239
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 234 bits (597), Expect = 8e-62
Identities = 114/141 (80%), Positives = 123/141 (87%)
Query: 152 ARLQQHIDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKPKNVKQPELEEKHF 211
+++ QHIDYRM+CILQ+G IF G FKAFDKH+NLILCDCDEFRKIKPKN KQ E EEK
Sbjct: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRV 66
Query: 212 WGLVLLHGENLVSMTVEGLPPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGG 271
GLVLL GENLVSMTVEG PPK TGIARVPLAGAAGGPG+ RAAGRG+ AGVP+PQAP G
Sbjct: 67 LGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAG 126
Query: 272 LAGPVPGVGGPSQQVMTPQRR 292
LAGPV GVGGPSQQVMTPQ R
Sbjct: 127 LAGPVRGVGGPSQQVMTPQGR 147
Score = 30.4 bits (67), Expect = 2.2
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 248 GPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGPSQQVMTPQR 291
GP + GRG G+P P G+ P PG+ GP M P R
Sbjct: 200 GPPMGIPPGRGTPMGMP----PPGMRPPPPGMRGPPPPGMRPPR 239
>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isoform
B [Homo sapiens]
Length = 231
Score = 234 bits (597), Expect = 8e-62
Identities = 114/141 (80%), Positives = 123/141 (87%)
Query: 152 ARLQQHIDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKPKNVKQPELEEKHF 211
+++ QHIDYRM+CILQ+G IF G FKAFDKH+NLILCDCDEFRKIKPKN KQ E EEK
Sbjct: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRV 66
Query: 212 WGLVLLHGENLVSMTVEGLPPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGG 271
GLVLL GENLVSMTVEG PPK TGIARVPLAGAAGGPG+ RAAGRG+ AGVP+PQAP G
Sbjct: 67 LGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAG 126
Query: 272 LAGPVPGVGGPSQQVMTPQRR 292
LAGPV GVGGPSQQVMTPQ R
Sbjct: 127 LAGPVRGVGGPSQQVMTPQGR 147
>gi|47132519 Ras association and pleckstrin homology domains 1
isoform 1 [Homo sapiens]
Length = 1250
Score = 38.1 bits (87), Expect = 0.010
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 30 GTQNHNASSSSFRGQTRP---VLLSLGPWAQMFKPVCPGKADPGLPPPSLNFGAPAPTPA 86
GTQ +S + RP ++ L P ++ P + P LPPP P P P
Sbjct: 584 GTQLEESSKARMESMNRPYTSLVPPLSPQPKIVTPYTASQPSPPLPPPP----PPPPPPP 639
Query: 87 PHIPASAQLTPAQSISFSGTSGP 109
P P P+QS +G++ P
Sbjct: 640 PPPPPPPPPLPSQSAPSAGSAAP 662
Score = 29.3 bits (64), Expect = 4.8
Identities = 20/73 (27%), Positives = 28/73 (38%)
Query: 44 QTRPVLLSLGPWAQMFKPVCPGKADPGLPPPSLNFGAPAPTPAPHIPASAQLTPAQSISF 103
Q+ P + + W PV P P SL F P P+P P P T + +
Sbjct: 893 QSPPAVKAKPKWQPSSIPVPSPDFPPPPPESSLVFPPPPPSPVPAPPPPPPPTASPTPDK 952
Query: 104 SGTSGPNRKRLIS 116
SG+ G + S
Sbjct: 953 SGSPGKKTSKTSS 965
>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
Length = 1714
Score = 37.4 bits (85), Expect = 0.018
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 228 EGLPPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGG 281
+GLP G R LAGA G PGV ++G S G+ P+ GL G PG+ G
Sbjct: 1314 QGLPGIRGGPGRTGLAGAPGPPGVKGSSGLPGSPGIQGPKGEQGLPGQ-PGIQG 1366
Score = 28.5 bits (62), Expect = 8.2
Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 229 GLPPKYTGIARVPLAGAAGGPGVVRAAG-RGVSA-----GVPIPQAPGGLAGPVPGVGGP 282
GLP + + G G PG + G +GV GVP P P GL G V G P
Sbjct: 858 GLPGEVGMTGSIGEKGERGSPGPLGPQGEKGVMGYPGPPGVPGPIGPLGLPGHVGARGPP 917
Query: 283 SQQVMTPQR 291
Q QR
Sbjct: 918 GSQGPKGQR 926
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 36.6 bits (83), Expect = 0.030
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 17/80 (21%)
Query: 227 VEGLPPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVP-IPQAPG--------------G 271
++G P K + V G G PG + G GVP +P PG G
Sbjct: 433 LQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLGPKGEPGIPGDQG 492
Query: 272 LAGP--VPGVGGPSQQVMTP 289
L GP +PG+GGPS + P
Sbjct: 493 LQGPPGIPGIGGPSGPIGPP 512
Score = 35.8 bits (81), Expect = 0.052
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 231 PPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAG-----PVPGVGGPSQ 284
PP G+ V G G PG G+ + G P PQ P G+ G +PG+G P Q
Sbjct: 262 PPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPGPQGPIGVPGVQGPPGIPGIGKPGQ 320
Score = 35.4 bits (80), Expect = 0.067
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 231 PPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGPS 283
PP + GI + +AG G PG A G G+P P P G GP P V P+
Sbjct: 526 PPGFPGIGKPGVAGLHGPPGKPGALGPQGQPGLPGPPGPPGPPGP-PAVMPPT 577
Score = 31.2 bits (69), Expect = 1.3
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 232 PKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPV--PGVGGP 282
P G +P G G PG G G GVP P G GP+ PG+GGP
Sbjct: 339 PGLPGPPGLPGIGKPGFPGPKGDRGMG---GVPGALGPRGEKGPIGAPGIGGP 388
Score = 30.4 bits (67), Expect = 2.2
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 231 PPKYTGIARVPLAGAAGGPGV---------VRAAGRGVSAGVPIPQAPGGLAGPVPGVGG 281
P Y G+ + + G G PG + G G+P PQ P G G +PG+G
Sbjct: 151 PQGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGEIGPMGIPGPQGPPGPHG-LPGIGK 209
Query: 282 P 282
P
Sbjct: 210 P 210
Score = 30.4 bits (67), Expect = 2.2
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 242 LAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGP--VPGVGGP 282
L G G PG+ +G G+P P+ GL GP PG+G P
Sbjct: 493 LQGPPGIPGIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGKP 535
Score = 29.6 bits (65), Expect = 3.7
Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 229 GLPPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGP-----VPGVGGPS 283
G PP G+ +P G G PG + G G+ PQ P G G PG G
Sbjct: 386 GGPPGEPGLPGIP--GPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFL 443
Query: 284 QQVMTPQRRALLEP 297
+V P R L P
Sbjct: 444 GEVGPPGMRGLPGP 457
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 36.6 bits (83), Expect = 0.030
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 17/80 (21%)
Query: 227 VEGLPPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVP-IPQAPG--------------G 271
++G P K + V G G PG + G GVP +P PG G
Sbjct: 433 LQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLGPKGEPGIPGDQG 492
Query: 272 LAGP--VPGVGGPSQQVMTP 289
L GP +PG+GGPS + P
Sbjct: 493 LQGPPGIPGIGGPSGPIGPP 512
Score = 35.8 bits (81), Expect = 0.052
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 231 PPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAG-----PVPGVGGPSQ 284
PP G+ V G G PG G+ + G P PQ P G+ G +PG+G P Q
Sbjct: 262 PPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPGPQGPIGVPGVQGPPGIPGIGKPGQ 320
Score = 35.4 bits (80), Expect = 0.067
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 231 PPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGPS 283
PP + GI + +AG G PG A G G+P P P G GP P V P+
Sbjct: 526 PPGFPGIGKPGVAGLHGPPGKPGALGPQGQPGLPGPPGPPGPPGP-PAVMPPT 577
Score = 31.2 bits (69), Expect = 1.3
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 232 PKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPV--PGVGGP 282
P G +P G G PG G G GVP P G GP+ PG+GGP
Sbjct: 339 PGLPGPPGLPGIGKPGFPGPKGDRGMG---GVPGALGPRGEKGPIGAPGIGGP 388
Score = 30.4 bits (67), Expect = 2.2
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 231 PPKYTGIARVPLAGAAGGPGV---------VRAAGRGVSAGVPIPQAPGGLAGPVPGVGG 281
P Y G+ + + G G PG + G G+P PQ P G G +PG+G
Sbjct: 151 PQGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGEIGPMGIPGPQGPPGPHG-LPGIGK 209
Query: 282 P 282
P
Sbjct: 210 P 210
Score = 30.4 bits (67), Expect = 2.2
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 242 LAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGP--VPGVGGP 282
L G G PG+ +G G+P P+ GL GP PG+G P
Sbjct: 493 LQGPPGIPGIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGKP 535
Score = 29.6 bits (65), Expect = 3.7
Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 229 GLPPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGP-----VPGVGGPS 283
G PP G+ +P G G PG + G G+ PQ P G G PG G
Sbjct: 386 GGPPGEPGLPGIP--GPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFL 443
Query: 284 QQVMTPQRRALLEP 297
+V P R L P
Sbjct: 444 GEVGPPGMRGLPGP 457
>gi|126352608 elastin isoform e precursor [Homo sapiens]
Length = 705
Score = 36.2 bits (82), Expect = 0.040
Identities = 22/41 (53%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 243 AGAAGGPGVVRAAGRGVSAGVPIPQAPGGL-AGPVPGVGGP 282
AG G PGV G GVSAG +PQ G+ G VPGVG P
Sbjct: 110 AGLGGVPGV---GGLGVSAGAVVPQPGAGVKPGKVPGVGLP 147
Score = 32.7 bits (73), Expect = 0.44
Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 233 KYTGIARVPLAGAAGGPGVVRAAGRGV------SAGVPIPQAPGGLAGPVPGVGGP 282
KY A + G GPGVV G GV AG+P+ G VPGV P
Sbjct: 315 KYGAAAGLVPGGPGFGPGVVGVPGAGVPGVGVPGAGIPVVPGAGIPGAAVPGVVSP 370
Score = 29.6 bits (65), Expect = 3.7
Identities = 24/56 (42%), Positives = 28/56 (50%), Gaps = 11/56 (19%)
Query: 229 GLPPKYTGIARVPLAGAAGG----PGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVG 280
GL P G+ P G A G PGV A G GV+ GV + APG G PG+G
Sbjct: 453 GLVP---GVGVAPGVGVAPGVGVAPGVGLAPGVGVAPGVGV--APG--VGVAPGIG 501
Score = 28.9 bits (63), Expect = 6.3
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 227 VEGLPPKYTGIARVPLAG----AAGGPGVVRAAGRGVSAGVPIPQAPG---GLAGPVPGV 279
V G+P GI + G AA +AA G +AG+ +P PG G+ G VPG
Sbjct: 282 VPGVPGAIPGIGGIAGVGTPAAAAAAAAAAKAAKYGAAAGL-VPGGPGFGPGVVG-VPGA 339
Query: 280 GGP 282
G P
Sbjct: 340 GVP 342
Score = 28.5 bits (62), Expect = 8.2
Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 9/50 (18%)
Query: 240 VPLAGAAGGPGVVRAAGRGVSA---------GVPIPQAPGGLAGPVPGVG 280
VP A G PG V G G+ A G P+ PGGLAG G G
Sbjct: 29 VPGAIPGGVPGGVFYPGAGLGALGGGALGPGGKPLKPVPGGLAGAGLGAG 78
Score = 28.5 bits (62), Expect = 8.2
Identities = 24/56 (42%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 229 GLPPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPG-GLA---GPVPGVG 280
G+ P+ A A PGV A G GV+ GV + APG GLA G PGVG
Sbjct: 436 GISPEAQAAAAAKAAKYGLVPGVGVAPGVGVAPGVGV--APGVGLAPGVGVAPGVG 489
>gi|126352700 elastin isoform b precursor [Homo sapiens]
Length = 677
Score = 36.2 bits (82), Expect = 0.040
Identities = 22/41 (53%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 243 AGAAGGPGVVRAAGRGVSAGVPIPQAPGGL-AGPVPGVGGP 282
AG G PGV G GVSAG +PQ G+ G VPGVG P
Sbjct: 100 AGLGGVPGV---GGLGVSAGAVVPQPGAGVKPGKVPGVGLP 137
Score = 32.7 bits (73), Expect = 0.44
Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 233 KYTGIARVPLAGAAGGPGVVRAAGRGV------SAGVPIPQAPGGLAGPVPGVGGP 282
KY A + G GPGVV G GV AG+P+ G VPGV P
Sbjct: 305 KYGAAAGLVPGGPGFGPGVVGVPGAGVPGVGVPGAGIPVVPGAGIPGAAVPGVVSP 360
Score = 29.6 bits (65), Expect = 3.7
Identities = 24/56 (42%), Positives = 28/56 (50%), Gaps = 11/56 (19%)
Query: 229 GLPPKYTGIARVPLAGAAGG----PGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVG 280
GL P G+ P G A G PGV A G GV+ GV + APG G PG+G
Sbjct: 443 GLVP---GVGVAPGVGVAPGVGVAPGVGLAPGVGVAPGVGV--APG--VGVAPGIG 491
Score = 28.9 bits (63), Expect = 6.3
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 227 VEGLPPKYTGIARVPLAG----AAGGPGVVRAAGRGVSAGVPIPQAPG---GLAGPVPGV 279
V G+P GI + G AA +AA G +AG+ +P PG G+ G VPG
Sbjct: 272 VPGVPGAIPGIGGIAGVGTPAAAAAAAAAAKAAKYGAAAGL-VPGGPGFGPGVVG-VPGA 329
Query: 280 GGP 282
G P
Sbjct: 330 GVP 332
Score = 28.5 bits (62), Expect = 8.2
Identities = 24/56 (42%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 229 GLPPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPG-GLA---GPVPGVG 280
G+ P+ A A PGV A G GV+ GV + APG GLA G PGVG
Sbjct: 426 GISPEAQAAAAAKAAKYGLVPGVGVAPGVGVAPGVGV--APGVGLAPGVGVAPGVG 479
>gi|126352440 elastin isoform a precursor [Homo sapiens]
Length = 724
Score = 36.2 bits (82), Expect = 0.040
Identities = 22/41 (53%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 243 AGAAGGPGVVRAAGRGVSAGVPIPQAPGGL-AGPVPGVGGP 282
AG G PGV G GVSAG +PQ G+ G VPGVG P
Sbjct: 110 AGLGGVPGV---GGLGVSAGAVVPQPGAGVKPGKVPGVGLP 147
Score = 32.7 bits (73), Expect = 0.44
Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 233 KYTGIARVPLAGAAGGPGVVRAAGRGV------SAGVPIPQAPGGLAGPVPGVGGP 282
KY A + G GPGVV G GV AG+P+ G VPGV P
Sbjct: 315 KYGAAAGLVPGGPGFGPGVVGVPGAGVPGVGVPGAGIPVVPGAGIPGAAVPGVVSP 370
Score = 29.6 bits (65), Expect = 3.7
Identities = 24/56 (42%), Positives = 28/56 (50%), Gaps = 11/56 (19%)
Query: 229 GLPPKYTGIARVPLAGAAGG----PGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVG 280
GL P G+ P G A G PGV A G GV+ GV + APG G PG+G
Sbjct: 472 GLVP---GVGVAPGVGVAPGVGVAPGVGLAPGVGVAPGVGV--APG--VGVAPGIG 520
Score = 28.9 bits (63), Expect = 6.3
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 227 VEGLPPKYTGIARVPLAG----AAGGPGVVRAAGRGVSAGVPIPQAPG---GLAGPVPGV 279
V G+P GI + G AA +AA G +AG+ +P PG G+ G VPG
Sbjct: 282 VPGVPGAIPGIGGIAGVGTPAAAAAAAAAAKAAKYGAAAGL-VPGGPGFGPGVVG-VPGA 339
Query: 280 GGP 282
G P
Sbjct: 340 GVP 342
Score = 28.5 bits (62), Expect = 8.2
Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 9/50 (18%)
Query: 240 VPLAGAAGGPGVVRAAGRGVSA---------GVPIPQAPGGLAGPVPGVG 280
VP A G PG V G G+ A G P+ PGGLAG G G
Sbjct: 29 VPGAIPGGVPGGVFYPGAGLGALGGGALGPGGKPLKPVPGGLAGAGLGAG 78
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 35.8 bits (81), Expect = 0.052
Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 227 VEGLPPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPV--PGVGGPSQ 284
+ G+P + L G AG PG V G G P P P G GPV PG GP+
Sbjct: 994 IVGMPGQRGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAG 1053
Query: 285 QVMTPQR 291
TP R
Sbjct: 1054 NDGTPGR 1060
Score = 32.0 bits (71), Expect = 0.75
Identities = 23/53 (43%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 229 GLPPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGG 281
GL P TGI P G AG PG G G P P+ P G+ G PGV G
Sbjct: 119 GLVPVVTGIRGRP--GPAGPPGSQGPRGERGPKGRPGPRGPQGIDGE-PGVPG 168
Score = 29.3 bits (64), Expect = 4.8
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 227 VEGLPPKYTGIARVPLA----GAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGP 282
++G+P + GIA P G G G AG + G+P P P G AGP G P
Sbjct: 760 LQGMPGE-RGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEP 818
Score = 28.5 bits (62), Expect = 8.2
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 244 GAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGPSQQVMTP 289
G G PG G SAG+P P P G GPV GPS + P
Sbjct: 1149 GLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPV----GPSGKEGNP 1190
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 35.4 bits (80), Expect = 0.067
Identities = 24/56 (42%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 231 PPKYTGIARVPLA----GAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGP 282
PP G A P A GA G PG A G AG P P P G GP+ VG P
Sbjct: 807 PPGPAGFAGPPGADGQPGAKGEPGDAGAKG---DAGPPGPAGPAGPPGPIGNVGAP 859
Score = 34.7 bits (78), Expect = 0.11
Identities = 29/77 (37%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 235 TGIARVPLA-GAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGPSQQVMTPQRRA 293
TG A P A GA G PG V AG+ G P P G GPV G GP+ PQ
Sbjct: 1039 TGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPV-GARGPA----GPQGPR 1093
Query: 294 LLEPQHSTHQDRGLHPH 310
+ + DRG+ H
Sbjct: 1094 GDKGETGEQGDRGIKGH 1110
Score = 33.1 bits (74), Expect = 0.33
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 227 VEGLPPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGG 281
V GLP + L G +G PG +G G P P P GLAGP PG G
Sbjct: 960 VVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGP-PGESG 1013
Score = 32.7 bits (73), Expect = 0.44
Identities = 17/39 (43%), Positives = 19/39 (48%)
Query: 244 GAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGP 282
GA G PG+ A G + G PQ PGG GP G P
Sbjct: 398 GANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEP 436
Score = 30.4 bits (67), Expect = 2.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 244 GAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGPSQ 284
G+ G PG+ G +AG+P P+ G AGP G P +
Sbjct: 719 GSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGK 759
Score = 30.0 bits (66), Expect = 2.8
Identities = 23/54 (42%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 231 PPKYTGIARVPLA-GAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGPS 283
PP G P A GA G G A G +AG P P G AGP PG GP+
Sbjct: 849 PPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGP-PGPPGPA 901
Score = 28.9 bits (63), Expect = 6.3
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 244 GAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGPS 283
G G PG V AG+ AG P P G AG G GP+
Sbjct: 599 GVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGE-RGEQGPA 637
Score = 28.9 bits (63), Expect = 6.3
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 243 AGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGG 281
+G +G G A G G P P P G AGP PG G
Sbjct: 784 SGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGP-PGADG 821
Score = 28.9 bits (63), Expect = 6.3
Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 244 GAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGPSQQVMTP 289
G G G AGR G P P P G G PG GP+ TP
Sbjct: 905 GGKGPRGETGPAGRPGEVGPPGPPGPAGEKGS-PGADGPAGAPGTP 949
>gi|121114296 caudal type homeobox 1 [Homo sapiens]
Length = 265
Score = 35.4 bits (80), Expect = 0.067
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 64 PGKADPGLPPPSLNFGAP---APTPAPHIPASAQLTPAQSISFSGTSGPNRKRLISMAEA 120
PG A P P SL FG P +P PAP P L AQ + GT + + E
Sbjct: 78 PGPAAPAASPASLAFGPPPDFSPVPAPPGPGPGLL--AQPLGGPGTPSSPGAQRPTPYEW 135
Query: 121 LRFRLRAGSGG 131
+R + AG GG
Sbjct: 136 MRRSVAAGGGG 146
>gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 35.0 bits (79), Expect = 0.088
Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 11/61 (18%)
Query: 55 WAQMFKPVCPGKADPGLPPPSLNFGAPAPTPAPHIPAS------AQLTPAQSISFSGTSG 108
W +M +P P P P AP PTP P P S AQ T Q S TSG
Sbjct: 572 WTRMARPAAPALTSVPAPAP-----APTPTPTPVQPTSPPPGPVAQPTGPQPQSAGSTSG 626
Query: 109 P 109
P
Sbjct: 627 P 627
>gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 35.0 bits (79), Expect = 0.088
Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 11/61 (18%)
Query: 55 WAQMFKPVCPGKADPGLPPPSLNFGAPAPTPAPHIPAS------AQLTPAQSISFSGTSG 108
W +M +P P P P AP PTP P P S AQ T Q S TSG
Sbjct: 572 WTRMARPAAPALTSVPAPAP-----APTPTPTPVQPTSPPPGPVAQPTGPQPQSAGSTSG 626
Query: 109 P 109
P
Sbjct: 627 P 627
>gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 35.0 bits (79), Expect = 0.088
Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 11/61 (18%)
Query: 55 WAQMFKPVCPGKADPGLPPPSLNFGAPAPTPAPHIPAS------AQLTPAQSISFSGTSG 108
W +M +P P P P AP PTP P P S AQ T Q S TSG
Sbjct: 572 WTRMARPAAPALTSVPAPAP-----APTPTPTPVQPTSPPPGPVAQPTGPQPQSAGSTSG 626
Query: 109 P 109
P
Sbjct: 627 P 627
>gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo
sapiens]
Length = 677
Score = 35.0 bits (79), Expect = 0.088
Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 11/61 (18%)
Query: 55 WAQMFKPVCPGKADPGLPPPSLNFGAPAPTPAPHIPAS------AQLTPAQSISFSGTSG 108
W +M +P P P P AP PTP P P S AQ T Q S TSG
Sbjct: 433 WTRMARPAAPALTSVPAPAP-----APTPTPTPVQPTSPPPGPVAQPTGPQPQSAGSTSG 487
Query: 109 P 109
P
Sbjct: 488 P 488
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 34.7 bits (78), Expect = 0.11
Identities = 24/55 (43%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 231 PPKYTGIARVPLA-GAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGP--VPGVGGP 282
PP G A P A G G G AG+ AG P PQ P G GP GV GP
Sbjct: 829 PPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGP 883
Score = 32.0 bits (71), Expect = 0.75
Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 227 VEGLPPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPV--------PG 278
+ GLP + L G +G PG A G G P P P GL GP PG
Sbjct: 982 IVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPG 1041
Query: 279 VGGP 282
GP
Sbjct: 1042 ADGP 1045
Score = 31.6 bits (70), Expect = 0.97
Identities = 19/40 (47%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 244 GAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGP--VPGVGG 281
GAAG PG AG G P P GL GP PG GG
Sbjct: 639 GAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGG 678
Score = 30.0 bits (66), Expect = 2.8
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 244 GAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGP 282
G+AG PG+ A G G P PQ G GP G P
Sbjct: 420 GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEP 458
Score = 30.0 bits (66), Expect = 2.8
Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 231 PPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGP 282
PP TG A P G G PG GR +AGV + G G PG GP
Sbjct: 1024 PPGLTGPAGEP--GREGSPGADGPPGRDGAAGVKGDRGETGAVG-APGAPGP 1072
Score = 29.6 bits (65), Expect = 3.7
Identities = 17/41 (41%), Positives = 18/41 (43%)
Query: 242 LAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGP 282
L G G G AAG + G P P P G GP G G P
Sbjct: 328 LPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFP 368
Score = 29.3 bits (64), Expect = 4.8
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 244 GAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGP-----VPGVGGPS 283
G AGGPG A G AG + P G GP PG GP+
Sbjct: 360 GPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPA 404
Score = 28.5 bits (62), Expect = 8.2
Identities = 18/44 (40%), Positives = 20/44 (45%)
Query: 242 LAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGPSQQ 285
L G AG PG G +G P P GLAG VG P Q+
Sbjct: 946 LQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQR 989
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 34.7 bits (78), Expect = 0.11
Identities = 24/55 (43%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 231 PPKYTGIARVPLA-GAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGP--VPGVGGP 282
PP G A P A G G G AG+ AG P PQ P G GP GV GP
Sbjct: 760 PPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGP 814
Score = 32.0 bits (71), Expect = 0.75
Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 227 VEGLPPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPV--------PG 278
+ GLP + L G +G PG A G G P P P GL GP PG
Sbjct: 913 IVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPG 972
Query: 279 VGGP 282
GP
Sbjct: 973 ADGP 976
Score = 31.6 bits (70), Expect = 0.97
Identities = 19/40 (47%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 244 GAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGP--VPGVGG 281
GAAG PG AG G P P GL GP PG GG
Sbjct: 570 GAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGG 609
Score = 30.0 bits (66), Expect = 2.8
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 244 GAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGP 282
G+AG PG+ A G G P PQ G GP G P
Sbjct: 351 GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEP 389
Score = 30.0 bits (66), Expect = 2.8
Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 231 PPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGP 282
PP TG A P G G PG GR +AGV + G G PG GP
Sbjct: 955 PPGLTGPAGEP--GREGSPGADGPPGRDGAAGVKGDRGETGAVG-APGAPGP 1003
Score = 29.6 bits (65), Expect = 3.7
Identities = 17/41 (41%), Positives = 18/41 (43%)
Query: 242 LAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGP 282
L G G G AAG + G P P P G GP G G P
Sbjct: 259 LPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFP 299
Score = 29.3 bits (64), Expect = 4.8
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 244 GAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGP-----VPGVGGPS 283
G AGGPG A G AG + P G GP PG GP+
Sbjct: 291 GPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPA 335
Score = 28.5 bits (62), Expect = 8.2
Identities = 18/44 (40%), Positives = 20/44 (45%)
Query: 242 LAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGPSQQ 285
L G AG PG G +G P P GLAG VG P Q+
Sbjct: 877 LQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQR 920
>gi|38569466 ROD1 regulator of differentiation 1 [Homo sapiens]
Length = 552
Score = 34.7 bits (78), Expect = 0.11
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 16/94 (17%)
Query: 192 EFRKIKPKNVKQPELEEKHFWGLVLLHGENLVSMTVEGLPPKYTGIARVPLAGAAGGPGV 251
+F K+ NVK + + F L L G+ S+ P+A A G PG+
Sbjct: 254 DFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-------------EPPMAAAFGAPGI 300
Query: 252 VR---AAGRGVSAGVPIPQAPGGLAGPVPGVGGP 282
+ A G + + PQA G VPG GP
Sbjct: 301 ISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGP 334
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 34.3 bits (77), Expect = 0.15
Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 9/51 (17%)
Query: 231 PPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGG 281
PP GIA GAAG PG+ + G+ G P PQ P GL G +PG G
Sbjct: 649 PPGADGIA-----GAAGPPGIQGSPGK---EGPPGPQGPSGLPG-IPGEEG 690
Score = 30.0 bits (66), Expect = 2.8
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 231 PPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGP 282
PP G+ +P G G GV GR + G P GL GP PG+ GP
Sbjct: 565 PPGPPGLPGLP--GFKGDKGVPGKPGREGTEGKKGEAGPPGLPGP-PGIAGP 613
Score = 29.6 bits (65), Expect = 3.7
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 244 GAAGGPGVVRAAGRGVSAGVP-IPQAPG-------GLAGPVPGVGGPSQQVMTPQRRAL 294
G G PG+ G G P IP +PG G+AGP PG GP +P R L
Sbjct: 472 GLRGSPGLPGPLGTKGDRGAPGIPGSPGSRGDPGIGVAGP-PGPSGPPGDKGSPGSRGL 529
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 34.3 bits (77), Expect = 0.15
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 231 PPKYTGIARVP-LAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGP--VPGVGGPS 283
PP TG P G GGPGV A G+ G+P GL GP +PG+ GP+
Sbjct: 419 PPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLP---GQPGLRGPSGIPGLQGPA 471
Score = 33.1 bits (74), Expect = 0.33
Identities = 26/56 (46%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 229 GLPPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVP---IPQAPGGLAGPVPGVGG 281
G PP G A +P G G PG AG G GVP Q P GLAG PGV G
Sbjct: 357 GGPPGLPGSAGLP--GRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAGK-PGVPG 409
Score = 32.7 bits (73), Expect = 0.44
Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 228 EGLPPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGP 282
E PP G P A GP V G +AG+P PQ P G G PG GP
Sbjct: 253 ESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGE-PGTRGP 306
Score = 30.8 bits (68), Expect = 1.7
Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 244 GAAGGPGVVRAAGRGVSAGVPIPQAPG--GLAGPVPGVGGP 282
GA G PG+ AG G +P APG G +GP PGV GP
Sbjct: 223 GAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGP-PGVPGP 262
Score = 30.4 bits (67), Expect = 2.2
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 236 GIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGP--VPGVGGPS 283
G +R+ AG G PG V G+ G P + GL GP PG+ GPS
Sbjct: 118 GFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPS 167
Score = 30.4 bits (67), Expect = 2.2
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 236 GIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGP----VPGVGGP 282
G+ V + GAAG PG +G + G P + P GL GP +PG+ GP
Sbjct: 276 GVDGVGVPGAAGLPGPQGPSG---AKGEPGTRGPPGLIGPTGYGMPGLPGP 323
Score = 30.0 bits (66), Expect = 2.8
Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 231 PPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGP--VPGVGG 281
PP G A + G G PG G GVP P+ G GP PGV G
Sbjct: 227 PPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDG 279
Score = 30.0 bits (66), Expect = 2.8
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 244 GAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGG 281
G AG PG++ G G P Q P GL GP PG+ G
Sbjct: 328 GPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGP-PGLPG 364
Score = 28.5 bits (62), Expect = 8.2
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 244 GAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGP--VPGVGG 281
G G PG+ +AG G P P+ G GP VPG+ G
Sbjct: 355 GLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRG 394
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 34.3 bits (77), Expect = 0.15
Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 9/51 (17%)
Query: 231 PPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGG 281
PP GIA GAAG PG+ + G+ G P PQ P GL G +PG G
Sbjct: 1202 PPGADGIA-----GAAGPPGIQGSPGK---EGPPGPQGPSGLPG-IPGEEG 1243
Score = 31.2 bits (69), Expect = 1.3
Identities = 17/42 (40%), Positives = 19/42 (45%)
Query: 244 GAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGPSQQ 285
G G PG + G G+ PQ P GL GP VG P Q
Sbjct: 548 GMRGEPGELGEPGLPGEVGMRGPQGPPGLPGPPGRVGAPGLQ 589
Score = 30.4 bits (67), Expect = 2.2
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 231 PPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVP----IPQAPG--GLAGPVPGVGGPS 283
PP G+ + L G G PGV G G S G+P P PG G GP PG GP+
Sbjct: 703 PPGIPGL--LGLQGPPGPPGVPGPPGPGGSPGLPGEIGFPGKPGPPGPTGP-PGKDGPN 758
Score = 30.0 bits (66), Expect = 2.8
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 231 PPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGP 282
PP G+ +P G G GV GR + G P GL GP PG+ GP
Sbjct: 1118 PPGPPGLPGLP--GFKGDKGVPGKPGREGTEGKKGEAGPPGLPGP-PGIAGP 1166
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,976,423
Number of Sequences: 37866
Number of extensions: 900204
Number of successful extensions: 8751
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 220
Number of HSP's that attempted gapping in prelim test: 6419
Number of HSP's gapped (non-prelim): 2513
length of query: 318
length of database: 18,247,518
effective HSP length: 102
effective length of query: 216
effective length of database: 14,385,186
effective search space: 3107200176
effective search space used: 3107200176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.