Guide to the Human Genome
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Name: ROD1 Sequence: fasta or formatted (552aa) NCBI GI: 38569466
Description:

ROD1 regulator of differentiation 1

Referenced in:

RNases and RNA Stability

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         47           3
 C cysteine            0.9          5           2
 D aspartate           4.2         23           2
 E glutamate           3.4         19           2
 F phenylalanine       4.7         26           2
 G glycine             7.4         41           2
 H histidine           2.7         15           2
 I isoleucine          5.8         32           3
 K lysine              5.6         31           2
 L leucine            11.1         61           2
 M methionine          2.2         12           1
 N asparagine          6.0         33           2
 P proline             6.9         38           2
 Q glutamine           4.9         27           1
 R arginine            3.6         20           1
 S serine              8.2         45           2
 T threonine           5.6         31           1
 V valine              6.2         34           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.2         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ROD1 regulator of differentiation 1 
PTBP1                 0.754   polypyrimidine tract-binding protein 1 isoform a [Hom...
PTBP1                 0.740   polypyrimidine tract-binding protein 1 isoform b [Ho...
PTBP1                 0.713   polypyrimidine tract-binding protein 1 isoform c [Ho...
PTBP2                 0.677   polypyrimidine tract binding protein 2 
PTBP1                 0.268   polypyrimidine tract-binding protein 1 isoform d [Ho...
HNRNPL                0.120   heterogeneous nuclear ribonucleoprotein L isoform a ...
HNRPLL                0.120   heterogeneous nuclear ribonucleoprotein L-like isof...
HNRPLL                0.120   heterogeneous nuclear ribonucleoprotein L-like isofo...
HNRNPL                0.103   heterogeneous nuclear ribonucleoprotein L isoform b ...
RBM20                 0.039   RNA binding motif protein 20 
ELAVL4                0.031   ELAV-like 4 isoform 1 
ELAVL4                0.025   ELAV-like 4 isoform 5 
ELAVL4                0.025   ELAV-like 4 isoform 4 
ELAVL4                0.025   ELAV-like 4 isoform 3 
ELAVL4                0.025   ELAV-like 4 isoform 2 
MATR3                 0.022   matrin 3 
MATR3                 0.022   matrin 3 
BRUNOL4               0.018   bruno-like 4, RNA binding protein isoform 1 
ZNF638                0.018   zinc finger protein 638 
ZNF638                0.018   zinc finger protein 638 
BRUNOL4               0.015   bruno-like 4, RNA binding protein isoform 2 
COL4A6                0.014   type IV alpha 6 collagen isoform A precursor 
BRUNOL4               0.014   bruno-like 4, RNA binding protein isoform 3 
COL4A6                0.014   type IV alpha 6 collagen isoform B precursor 
HTATSF1               0.013   HIV-1 Tat specific factor 1 
HTATSF1               0.013   HIV-1 Tat specific factor 1 
COL19A1               0.013   alpha 1 type XIX collagen precursor 
SNRPA                 0.013   small nuclear ribonucleoprotein polypeptide A 
NONO                  0.012   non-POU domain containing, octamer-binding isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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