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Search of human proteins with 169215620
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169215620 PREDICTED: hypothetical protein [Homo sapiens]
(104 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169216028 PREDICTED: hypothetical protein [Homo sapiens] 209 4e-55
gi|169215823 PREDICTED: hypothetical protein [Homo sapiens] 209 4e-55
gi|169215622 PREDICTED: hypothetical protein [Homo sapiens] 209 4e-55
gi|169215620 PREDICTED: hypothetical protein [Homo sapiens] 209 4e-55
gi|239756124 PREDICTED: hypothetical protein [Homo sapiens] 33 0.037
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens] 31 0.18
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|208022661 hypothetical protein LOC57701 [Homo sapiens] 30 0.31
gi|169167808 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|113417039 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|113416520 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|149944451 zinc finger, SWIM domain containing 5 [Homo sapiens] 30 0.41
gi|61699226 pulmonary surfactant-associated protein D precursor ... 30 0.53
gi|169208819 PREDICTED: similar to kinase D-interacting substrat... 30 0.53
gi|169208593 PREDICTED: similar to kinase D-interacting substrat... 30 0.53
gi|169208169 PREDICTED: similar to kinase D-interacting substrat... 30 0.53
gi|119392094 immunoglobulin mu binding protein 2 [Homo sapiens] 29 0.69
gi|239758117 PREDICTED: hypothetical protein [Homo sapiens] 29 0.69
gi|58293779 hypothetical protein LOC196541 [Homo sapiens] 29 0.69
gi|169207782 PREDICTED: hypothetical protein [Homo sapiens] 29 0.91
gi|169207076 PREDICTED: hypothetical protein [Homo sapiens] 29 0.91
gi|239508745 PREDICTED: hypothetical protein [Homo sapiens] 29 0.91
gi|35493853 otoferlin isoform c [Homo sapiens] 29 0.91
gi|35493868 otoferlin isoform b [Homo sapiens] 29 0.91
gi|35493860 otoferlin isoform d [Homo sapiens] 29 0.91
gi|34740331 otoferlin isoform a [Homo sapiens] 29 0.91
gi|153285461 fibroblast growth factor 2 [Homo sapiens] 28 1.2
gi|7662162 ALEX2 protein [Homo sapiens] 28 1.5
gi|29540562 ALEX2 protein [Homo sapiens] 28 1.5
gi|41393599 coproporphyrinogen oxidase [Homo sapiens] 28 2.0
>gi|169216028 PREDICTED: hypothetical protein [Homo sapiens]
Length = 104
Score = 209 bits (532), Expect = 4e-55
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MTGEGDKGKTCGGGAAGSWSTESLPRMEAAAAQSRFSSPAGTRLAGKFVSSSRNGMAGRG 60
MTGEGDKGKTCGGGAAGSWSTESLPRMEAAAAQSRFSSPAGTRLAGKFVSSSRNGMAGRG
Sbjct: 1 MTGEGDKGKTCGGGAAGSWSTESLPRMEAAAAQSRFSSPAGTRLAGKFVSSSRNGMAGRG 60
Query: 61 TETALAEEKLGVPKARGPGRRGEAPQQPGFSLAGQRLGAPRLAA 104
TETALAEEKLGVPKARGPGRRGEAPQQPGFSLAGQRLGAPRLAA
Sbjct: 61 TETALAEEKLGVPKARGPGRRGEAPQQPGFSLAGQRLGAPRLAA 104
>gi|169215823 PREDICTED: hypothetical protein [Homo sapiens]
Length = 104
Score = 209 bits (532), Expect = 4e-55
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MTGEGDKGKTCGGGAAGSWSTESLPRMEAAAAQSRFSSPAGTRLAGKFVSSSRNGMAGRG 60
MTGEGDKGKTCGGGAAGSWSTESLPRMEAAAAQSRFSSPAGTRLAGKFVSSSRNGMAGRG
Sbjct: 1 MTGEGDKGKTCGGGAAGSWSTESLPRMEAAAAQSRFSSPAGTRLAGKFVSSSRNGMAGRG 60
Query: 61 TETALAEEKLGVPKARGPGRRGEAPQQPGFSLAGQRLGAPRLAA 104
TETALAEEKLGVPKARGPGRRGEAPQQPGFSLAGQRLGAPRLAA
Sbjct: 61 TETALAEEKLGVPKARGPGRRGEAPQQPGFSLAGQRLGAPRLAA 104
>gi|169215622 PREDICTED: hypothetical protein [Homo sapiens]
Length = 104
Score = 209 bits (532), Expect = 4e-55
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MTGEGDKGKTCGGGAAGSWSTESLPRMEAAAAQSRFSSPAGTRLAGKFVSSSRNGMAGRG 60
MTGEGDKGKTCGGGAAGSWSTESLPRMEAAAAQSRFSSPAGTRLAGKFVSSSRNGMAGRG
Sbjct: 1 MTGEGDKGKTCGGGAAGSWSTESLPRMEAAAAQSRFSSPAGTRLAGKFVSSSRNGMAGRG 60
Query: 61 TETALAEEKLGVPKARGPGRRGEAPQQPGFSLAGQRLGAPRLAA 104
TETALAEEKLGVPKARGPGRRGEAPQQPGFSLAGQRLGAPRLAA
Sbjct: 61 TETALAEEKLGVPKARGPGRRGEAPQQPGFSLAGQRLGAPRLAA 104
>gi|169215620 PREDICTED: hypothetical protein [Homo sapiens]
Length = 104
Score = 209 bits (532), Expect = 4e-55
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MTGEGDKGKTCGGGAAGSWSTESLPRMEAAAAQSRFSSPAGTRLAGKFVSSSRNGMAGRG 60
MTGEGDKGKTCGGGAAGSWSTESLPRMEAAAAQSRFSSPAGTRLAGKFVSSSRNGMAGRG
Sbjct: 1 MTGEGDKGKTCGGGAAGSWSTESLPRMEAAAAQSRFSSPAGTRLAGKFVSSSRNGMAGRG 60
Query: 61 TETALAEEKLGVPKARGPGRRGEAPQQPGFSLAGQRLGAPRLAA 104
TETALAEEKLGVPKARGPGRRGEAPQQPGFSLAGQRLGAPRLAA
Sbjct: 61 TETALAEEKLGVPKARGPGRRGEAPQQPGFSLAGQRLGAPRLAA 104
>gi|239756124 PREDICTED: hypothetical protein [Homo sapiens]
Length = 348
Score = 33.5 bits (75), Expect = 0.037
Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 29 AAAAQSRFSSPAGTRLAGKF-----VSSSRNGMAGRGTETALAEEKLGVPKARGPGRRGE 83
A +A S P RLAG F SSR +G+G + A G P+ R P R
Sbjct: 64 ARSAPELASGPPRPRLAGHFDPECSTRSSRTDSSGKGQSSLRASP--GPPRRRPPSLRSA 121
Query: 84 APQQPGFSLAGQRLGAPRL 102
P+ P +L APR+
Sbjct: 122 VPRIPRLRPERYQLVAPRV 140
>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 653
Score = 31.2 bits (69), Expect = 0.18
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Query: 9 KTCGGGAAGSWS-----TESL---PRMEAAAAQSRFSSPAGTRLAGKFVSSSRNGMAGRG 60
++CG G SW+ ++SL P E+ QS S P + + + +R G
Sbjct: 385 ESCGFGVRLSWAQGVSDSQSLCSGPSSESDCVQSHLSLPLCFAESHMWETEARQSWGLLG 444
Query: 61 TETALAEEKLGVPKARGPGRRGEAPQQPGFSLAG 94
AL E L V +A G PQ P +AG
Sbjct: 445 AVPALVPEALAVTRALGCPILAWPPQPPAHLVAG 478
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 30.8 bits (68), Expect = 0.24
Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Query: 5 GDKGKTCGGGAAGSWSTESLPRMEAAAAQSRFSSPAGTRLAGKFVSSSRNG--------- 55
G K ++ GG ++ + A A+SR G + A + SR G
Sbjct: 439 GGKSRSGGGKKPRRRGQKARQKAAEAGAESRGDKKQGRQKASAAGTKSRGGGLKSHSGKN 498
Query: 56 MAGRGTETALAEEKLGVPKARGPGRRGEAPQQPGFSLAGQRLGAPR 101
+ RG + A EK A+ GR+ Q+P + A R+G +
Sbjct: 499 LWRRGQKAEAAGEKATAAGAKSRGRKQPRRQKPAVAGAKSRVGGSK 544
>gi|208022661 hypothetical protein LOC57701 [Homo sapiens]
Length = 1334
Score = 30.4 bits (67), Expect = 0.31
Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 13/54 (24%)
Query: 37 SSPAGTRLAGKFVSSSRNGMAGRGTETALAEEKLGVP------KARGPGRRGEA 84
S+P RLA G G E AL EK GVP K RGPG+ GE+
Sbjct: 658 STPLRDRLAAL-------GKLKTGPEGALGSEKNGVPARPGTEKTRGPGKSGES 704
>gi|169167808 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 30.0 bits (66), Expect = 0.41
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 12 GGGAAGSWSTESL-PRMEAAAAQSRFSSPAGTRLAGKFVSSSRNGMAGRGTETALAEEKL 70
G AG+ + L PR + + +++ S+ G R+ + G GRG E+A
Sbjct: 29 GASRAGTGGSGVLTPRAKGSTSRAESSAARGARVRAP--GRTCRGGPGRGYESAAGNSLP 86
Query: 71 GVPKARGPGRRGEAPQQPG 89
VP G G A QPG
Sbjct: 87 SVPGGGGRDPGGGAASQPG 105
>gi|113417039 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 30.0 bits (66), Expect = 0.41
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 12 GGGAAGSWSTESL-PRMEAAAAQSRFSSPAGTRLAGKFVSSSRNGMAGRGTETALAEEKL 70
G AG+ + L PR + + +++ S+ G R+ + G GRG E+A
Sbjct: 29 GASRAGTGGSGVLTPRAKGSTSRAESSAARGARVRAP--GRTCRGGPGRGYESAAGNSLP 86
Query: 71 GVPKARGPGRRGEAPQQPG 89
VP G G A QPG
Sbjct: 87 SVPGGGGRDPGGGAASQPG 105
>gi|113416520 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 30.0 bits (66), Expect = 0.41
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 12 GGGAAGSWSTESL-PRMEAAAAQSRFSSPAGTRLAGKFVSSSRNGMAGRGTETALAEEKL 70
G AG+ + L PR + + +++ S+ G R+ + G GRG E+A
Sbjct: 29 GASRAGTGGSGVLTPRAKGSTSRAESSAARGARVRAP--GRTCRGGPGRGYESAAGNSLP 86
Query: 71 GVPKARGPGRRGEAPQQPG 89
VP G G A QPG
Sbjct: 87 SVPGGGGRDPGGGAASQPG 105
>gi|149944451 zinc finger, SWIM domain containing 5 [Homo sapiens]
Length = 1185
Score = 30.0 bits (66), Expect = 0.41
Identities = 29/94 (30%), Positives = 35/94 (37%), Gaps = 12/94 (12%)
Query: 5 GDKGKTCGGGAAGSWSTESLPRMEAAAAQSRFSSPAGTRLAGKFVSSSRNGMAGRGTETA 64
G G GGAAG+ E P+ AA S+P G + G AG G E
Sbjct: 119 GGPGAGAAGGAAGASPAEEGPQPPPGAAAPAGSAPGGVAAGASPGLGAGAGAAGCGGE-- 176
Query: 65 LAEEKLGVPKARG----PGRRGEAPQQPGFSLAG 94
G+P RG E Q GF L+G
Sbjct: 177 ------GLPFRRGIRLLDSGSVENVLQVGFHLSG 204
>gi|61699226 pulmonary surfactant-associated protein D precursor
[Homo sapiens]
Length = 375
Score = 29.6 bits (65), Expect = 0.53
Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 7/102 (6%)
Query: 5 GDKGKTCGGGAAGSWSTESLPRMEAAAAQSRFSSPAGTR-LAGKFVSSSRNGMAGRGTET 63
G +GK G AG P M+ +A + P G R + G+ G AG +
Sbjct: 130 GPQGKPGPKGEAGPKGEVGAPGMQGSAGARGLAGPKGERGVPGERGVPGNTGAAG----S 185
Query: 64 ALAEEKLGVPKARG-PGRRGEAPQQPGFSLAGQRLGAPRLAA 104
A A G P ARG PG +G+ PG A G P +A+
Sbjct: 186 AGAMGPQGSPGARGPPGLKGD-KGIPGDKGAKGESGLPDVAS 226
>gi|169208819 PREDICTED: similar to kinase D-interacting substrate
220 [Homo sapiens]
Length = 380
Score = 29.6 bits (65), Expect = 0.53
Identities = 20/76 (26%), Positives = 30/76 (39%)
Query: 5 GDKGKTCGGGAAGSWSTESLPRMEAAAAQSRFSSPAGTRLAGKFVSSSRNGMAGRGTETA 64
G G+ AA +++S P A AA P+ RL ++ G G E
Sbjct: 175 GPWGRAAAAAAARGSNSDSPPGRPAPAASPEHRRPSPRRLPRPLLARFARAAGGHGGEAG 234
Query: 65 LAEEKLGVPKARGPGR 80
A + G +A+G R
Sbjct: 235 SAGKNSGRHRAQGSER 250
>gi|169208593 PREDICTED: similar to kinase D-interacting substrate
220 [Homo sapiens]
Length = 380
Score = 29.6 bits (65), Expect = 0.53
Identities = 20/76 (26%), Positives = 30/76 (39%)
Query: 5 GDKGKTCGGGAAGSWSTESLPRMEAAAAQSRFSSPAGTRLAGKFVSSSRNGMAGRGTETA 64
G G+ AA +++S P A AA P+ RL ++ G G E
Sbjct: 175 GPWGRAAAAAAARGSNSDSPPGRPAPAASPEHRRPSPRRLPRPLLARFARAAGGHGGEAG 234
Query: 65 LAEEKLGVPKARGPGR 80
A + G +A+G R
Sbjct: 235 SAGKNSGRHRAQGSER 250
>gi|169208169 PREDICTED: similar to kinase D-interacting substrate
220 [Homo sapiens]
Length = 380
Score = 29.6 bits (65), Expect = 0.53
Identities = 20/76 (26%), Positives = 30/76 (39%)
Query: 5 GDKGKTCGGGAAGSWSTESLPRMEAAAAQSRFSSPAGTRLAGKFVSSSRNGMAGRGTETA 64
G G+ AA +++S P A AA P+ RL ++ G G E
Sbjct: 175 GPWGRAAAAAAARGSNSDSPPGRPAPAASPEHRRPSPRRLPRPLLARFARAAGGHGGEAG 234
Query: 65 LAEEKLGVPKARGPGR 80
A + G +A+G R
Sbjct: 235 SAGKNSGRHRAQGSER 250
>gi|119392094 immunoglobulin mu binding protein 2 [Homo sapiens]
Length = 993
Score = 29.3 bits (64), Expect = 0.69
Identities = 18/58 (31%), Positives = 24/58 (41%)
Query: 34 SRFSSPAGTRLAGKFVSSSRNGMAGRGTETALAEEKLGVPKARGPGRRGEAPQQPGFS 91
S+ SS A T+ G S+ G + A A + G K G EAP QP +
Sbjct: 656 SQGSSHAATKPQGPATSTRTGSQRQEGGQEAAAPARQGRKKPAGKSLASEAPSQPSLN 713
>gi|239758117 PREDICTED: hypothetical protein [Homo sapiens]
Length = 465
Score = 29.3 bits (64), Expect = 0.69
Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 11/96 (11%)
Query: 4 EGDKGKTCGGGA---AGSWSTESLPRMEAAAAQSRFSSPAGTRLAGKFVSSSRNGMAGRG 60
E GKTCGGG G + L + SR+ GK + AG
Sbjct: 263 EAAAGKTCGGGGEKHRGGGDKKPLRK------NSRWRGQKAAAAGGK--KPQKAAAAGGE 314
Query: 61 TETALAEEKLGVPKARGPGRRGEAPQQPGFSLAGQR 96
L +K V +A+ P + Q G + GQR
Sbjct: 315 RRKKLRRQKAAVARAKSPKKPRWRGQNSGNGVEGQR 350
>gi|58293779 hypothetical protein LOC196541 [Homo sapiens]
Length = 264
Score = 29.3 bits (64), Expect = 0.69
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 75 ARGPGRRGEAPQQPGFSLAGQRLGAPR 101
A+ PGRRGE PG L ++ GAP+
Sbjct: 8 AQQPGRRGEGLSSPGGWLEAEKKGAPQ 34
>gi|169207782 PREDICTED: hypothetical protein [Homo sapiens]
Length = 330
Score = 28.9 bits (63), Expect = 0.91
Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 38 SPAGTRLAGKFVSSSRNGMAGRGTETALAEEKLGV-----PKARG---PGRRGEAPQQPG 89
SP G+R S R+G G G AL +E P ARG PGR AP
Sbjct: 135 SPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARP 194
Query: 90 FSLAGQRLGAPRLAA 104
+ G+R G R A+
Sbjct: 195 STQPGRRPGLGRAAS 209
>gi|169207076 PREDICTED: hypothetical protein [Homo sapiens]
Length = 330
Score = 28.9 bits (63), Expect = 0.91
Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 38 SPAGTRLAGKFVSSSRNGMAGRGTETALAEEKLGV-----PKARG---PGRRGEAPQQPG 89
SP G+R S R+G G G AL +E P ARG PGR AP
Sbjct: 135 SPRGSRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLPAPLARP 194
Query: 90 FSLAGQRLGAPRLAA 104
+ G+R G R A+
Sbjct: 195 STQPGRRPGLGRAAS 209
>gi|239508745 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 28.9 bits (63), Expect = 0.91
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 39 PAGTRLAGKFVSSSRNGMAGRGTETALAEEKLGVPKARGPGRRGEAPQQPG 89
PAG+ A +F ++S AGR E A A G A GP EAPQ G
Sbjct: 132 PAGSLPAAQFAAASGAARAGRRRERACAGRSAG--DAAGP----EAPQPTG 176
>gi|35493853 otoferlin isoform c [Homo sapiens]
Length = 1307
Score = 28.9 bits (63), Expect = 0.91
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 19 WSTESLPRMEAAAAQSRFSSPAGTRLAGKFVSSSRNGMAG--RGTETALA--EEKLGVPK 74
W ++ ++ Q R P+G L K + G+ G +G E A A EEK +
Sbjct: 638 WWSKYFASIDTMKEQLRQQEPSGIDLEEKEEVDNTEGLKGSMKGKEKARAAKEEKKKKTQ 697
Query: 75 ARGPGRRGEAPQQ 87
+ G G+ EAP++
Sbjct: 698 SSGSGQGSEAPEK 710
>gi|35493868 otoferlin isoform b [Homo sapiens]
Length = 1230
Score = 28.9 bits (63), Expect = 0.91
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 19 WSTESLPRMEAAAAQSRFSSPAGTRLAGKFVSSSRNGMAG--RGTETALA--EEKLGVPK 74
W ++ ++ Q R P+G L K + G+ G +G E A A EEK +
Sbjct: 561 WWSKYFASIDTMKEQLRQQEPSGIDLEEKEEVDNTEGLKGSMKGKEKARAAKEEKKKKTQ 620
Query: 75 ARGPGRRGEAPQQ 87
+ G G+ EAP++
Sbjct: 621 SSGSGQGSEAPEK 633
>gi|35493860 otoferlin isoform d [Homo sapiens]
Length = 1230
Score = 28.9 bits (63), Expect = 0.91
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 19 WSTESLPRMEAAAAQSRFSSPAGTRLAGKFVSSSRNGMAG--RGTETALA--EEKLGVPK 74
W ++ ++ Q R P+G L K + G+ G +G E A A EEK +
Sbjct: 561 WWSKYFASIDTMKEQLRQQEPSGIDLEEKEEVDNTEGLKGSMKGKEKARAAKEEKKKKTQ 620
Query: 75 ARGPGRRGEAPQQ 87
+ G G+ EAP++
Sbjct: 621 SSGSGQGSEAPEK 633
>gi|34740331 otoferlin isoform a [Homo sapiens]
Length = 1997
Score = 28.9 bits (63), Expect = 0.91
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 19 WSTESLPRMEAAAAQSRFSSPAGTRLAGKFVSSSRNGMAG--RGTETALA--EEKLGVPK 74
W ++ ++ Q R P+G L K + G+ G +G E A A EEK +
Sbjct: 1328 WWSKYFASIDTMKEQLRQQEPSGIDLEEKEEVDNTEGLKGSMKGKEKARAAKEEKKKKTQ 1387
Query: 75 ARGPGRRGEAPQQ 87
+ G G+ EAP++
Sbjct: 1388 SSGSGQGSEAPEK 1400
>gi|153285461 fibroblast growth factor 2 [Homo sapiens]
Length = 288
Score = 28.5 bits (62), Expect = 1.2
Identities = 37/111 (33%), Positives = 48/111 (43%), Gaps = 19/111 (17%)
Query: 1 MTGEGDKGKTCGG-GAAGSWSTESLPRMEAAAAQS---RFSSPAGTRLAGKFV----SSS 52
++G G +G C G A +W +LPR S R + R G+ S S
Sbjct: 21 ISGRGARG--CNGIPGAAAWEA-ALPRRRPRRHPSVNPRSRAAGSPRTRGRRTEERPSGS 77
Query: 53 RNGMAGRGTETALAEEKLGVPKARGPGRRGEAPQQPGFSLAGQRLGAPRLA 103
R G GRG AL +LG RG RG AP++ G G+ APR A
Sbjct: 78 RLGDRGRGR--ALPGGRLG---GRG---RGRAPERVGGRGRGRGTAAPRAA 120
>gi|7662162 ALEX2 protein [Homo sapiens]
Length = 632
Score = 28.1 bits (61), Expect = 1.5
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 11/82 (13%)
Query: 14 GAAGSWSTESLPRMEAA---------AAQSRFSSPAGT--RLAGKFVSSSRNGMAGRGTE 62
G +GS T +P AA A + +S G + GK V+ SRNG G+G +
Sbjct: 240 GTSGSPRTAVVPGTSAAKKATPGAHTGAIPKATSATGAVPKGGGKGVTRSRNGGKGKGKK 299
Query: 63 TALAEEKLGVPKARGPGRRGEA 84
+ + ++LG+ G G A
Sbjct: 300 SKVEVDELGMGFRPGDGAAAAA 321
>gi|29540562 ALEX2 protein [Homo sapiens]
Length = 632
Score = 28.1 bits (61), Expect = 1.5
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 11/82 (13%)
Query: 14 GAAGSWSTESLPRMEAA---------AAQSRFSSPAGT--RLAGKFVSSSRNGMAGRGTE 62
G +GS T +P AA A + +S G + GK V+ SRNG G+G +
Sbjct: 240 GTSGSPRTAVVPGTSAAKKATPGAHTGAIPKATSATGAVPKGGGKGVTRSRNGGKGKGKK 299
Query: 63 TALAEEKLGVPKARGPGRRGEA 84
+ + ++LG+ G G A
Sbjct: 300 SKVEVDELGMGFRPGDGAAAAA 321
>gi|41393599 coproporphyrinogen oxidase [Homo sapiens]
Length = 454
Score = 27.7 bits (60), Expect = 2.0
Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 11 CGGGAAGSWSTESLPRMEAAAAQSRFSSPAGTRLAGKF--VSSSRNG-MAGRGTETALA 66
CGGG +WS S AA R PAGT + S+SR G G G ALA
Sbjct: 30 CGGGGLRAWSQRS-----AAGRVCRPPGPAGTEQSRGLGHGSTSRGGPWVGTGLAAALA 83
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.128 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,748,269
Number of Sequences: 37866
Number of extensions: 227738
Number of successful extensions: 962
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 895
Number of HSP's gapped (non-prelim): 125
length of query: 104
length of database: 18,247,518
effective HSP length: 75
effective length of query: 29
effective length of database: 15,407,568
effective search space: 446819472
effective search space used: 446819472
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.