Guide to the Human Genome
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Name: C13orf39 Sequence: fasta or formatted (264aa) NCBI GI: 58293779
Description:

hypothetical protein LOC196541

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         19           1
 C cysteine            1.1          3           1
 D aspartate           5.7         15           1
 E glutamate           8.0         21           2
 F phenylalanine       4.5         12           1
 G glycine             7.2         19           2
 H histidine           2.3          6           2
 I isoleucine          3.4          9           1
 K lysine              6.8         18           2
 L leucine            12.5         33           2
 M methionine          1.1          3           1
 N asparagine          2.7          7           1
 P proline             4.5         12           1
 Q glutamine           4.9         13           2
 R arginine            1.5          4           2
 S serine              7.2         19           2
 T threonine           4.9         13           2
 V valine              7.2         19           2
 W tryptophan          1.9          5           1
 Y tyrosine            5.3         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC196541 
FAM119A               0.136   hypothetical protein LOC151194 
FAM119A               0.136   hypothetical protein LOC151194 
FAM119B               0.121   hypothetical protein LOC25895 isoform a 
C14orf138             0.086   hypothetical protein LOC79609 isoform b 
C14orf138             0.086   hypothetical protein LOC79609 isoform a 
C16orf68              0.055   hypothetical protein LOC79091 
C17orf95              0.053   hypothetical protein LOC124512 
FAM119B               0.047   hypothetical protein LOC25895 isoform b 
C12orf72              0.033   hypothetical protein LOC254013 
C12orf72              0.033   hypothetical protein LOC254013 
C12orf72              0.033   hypothetical protein LOC254013 
FAM86A                0.029   hypothetical protein LOC196483 isoform 1 
FAM86B2               0.029   PREDICTED: hypothetical protein LOC653333 
FAM86A                0.029   hypothetical protein LOC196483 isoform 2 
FAM86B1               0.025   hypothetical protein LOC85002 
FAM86B2               0.025   hypothetical protein LOC653333 
CHGB                  0.019   chromogranin B precursor 
C1orf156              0.019   hypothetical protein MGC9084 
NUP133                0.018   nucleoporin 133kDa 
COQ3                  0.016   hexaprenyldihydroxybenzoate methyltransferase [Homo...
CHN2                  0.010   beta chimerin isoform 2 
CHN2                  0.010   beta chimerin isoform 1 
FAM63B                0.010   hypothetical protein LOC54629 isoform a 
FAM63B                0.010   hypothetical protein LOC54629 isoform b 
ALAS1                 0.010   5-aminolevulinate synthase 1 
ALAS1                 0.010   5-aminolevulinate synthase 1 
LOC100130420          0.008   PREDICTED: hypothetical protein 
LOC100130420          0.008   PREDICTED: hypothetical protein 
LOC100130420          0.008   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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