Guide to the Human Genome
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Name: LOC100132082 Sequence: fasta or formatted (104aa) NCBI GI: 169215620
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.3         17           4
 C cysteine            1.0          1           1
 D aspartate           1.0          1           1
 E glutamate           6.7          7           2
 F phenylalanine       2.9          3           1
 G glycine            18.3         19           3
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine              4.8          5           1
 L leucine             6.7          7           1
 M methionine          2.9          3           1
 N asparagine          1.0          1           1
 P proline             6.7          7           1
 Q glutamine           3.8          4           2
 R arginine            9.6         10           2
 S serine              9.6         10           3
 T threonine           5.8          6           1
 V valine              1.9          2           1
 W tryptophan          1.0          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130420          1.000   PREDICTED: hypothetical protein 
LOC100130420          1.000   PREDICTED: hypothetical protein 
LOC100130420          1.000   PREDICTED: hypothetical protein 
LOC100292541          0.043   PREDICTED: hypothetical protein 
NKX1-1                0.033   PREDICTED: NK1 homeobox 1 
LOC100292370          0.033   PREDICTED: hypothetical protein 
KIAA1602              0.027   hypothetical protein LOC57701 
LOC729989             0.027   PREDICTED: hypothetical protein 
LOC729989             0.027   PREDICTED: hypothetical protein 
LOC729989             0.027   PREDICTED: hypothetical protein 
ZSWIM5                0.027   zinc finger, SWIM domain containing 5 
SFTPD                 0.027   pulmonary surfactant-associated protein D precursor ...
LOC100131244          0.027   PREDICTED: similar to kinase D-interacting substrat...
LOC100131244          0.027   PREDICTED: similar to kinase D-interacting substrat...
LOC100131244          0.027   PREDICTED: similar to kinase D-interacting substrat...
IGHMBP2               0.022   immunoglobulin mu binding protein 2 
LOC100293129          0.022   PREDICTED: hypothetical protein 
C13orf39              0.022   hypothetical protein LOC196541 
LOC400236             0.022   PREDICTED: hypothetical protein 
LOC400236             0.022   PREDICTED: hypothetical protein 
LOC100129036          0.022   PREDICTED: hypothetical protein 
OTOF                  0.022   otoferlin isoform c 
OTOF                  0.022   otoferlin isoform b 
OTOF                  0.022   otoferlin isoform d 
OTOF                  0.022   otoferlin isoform a 
FGF2                  0.016   fibroblast growth factor 2 
ARMCX2                0.016   ALEX2 protein 
ARMCX2                0.016   ALEX2 protein 
CPOX                  0.016   coproporphyrinogen oxidase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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