Guide to the Human Genome
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Name: LOC729989 Sequence: fasta or formatted (195aa) NCBI GI: 113416520
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {195aa} PREDICTED: hypothetical protein
alt mRNA {195aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.3         24           2
 C cysteine            2.1          4           1
 D aspartate           2.6          5           1
 E glutamate           4.6          9           1
 F phenylalanine       1.0          2           2
 G glycine            17.4         34           4
 H histidine           1.5          3           1
 I isoleucine          0.0          0           0
 K lysine              4.1          8           1
 L leucine             5.1         10           3
 M methionine          1.0          2           1
 N asparagine          1.0          2           1
 P proline             9.7         19           2
 Q glutamine           3.1          6           1
 R arginine           13.3         26           2
 S serine              7.2         14           2
 T threonine           8.7         17           3
 V valine              3.1          6           2
 W tryptophan          1.0          2           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729989             1.000   PREDICTED: hypothetical protein 
LOC729989             1.000   PREDICTED: hypothetical protein 
LOC100292370          0.058   PREDICTED: hypothetical protein 
LOC100133885          0.055   PREDICTED: hypothetical protein 
LOC100290812          0.052   PREDICTED: hypothetical protein XP_002347678 
LOC100290783          0.052   PREDICTED: hypothetical protein XP_002347614 
LOC100288205          0.052   PREDICTED: hypothetical protein XP_002343496 
LOC100288864          0.052   PREDICTED: hypothetical protein XP_002343435 
LOC100127891          0.052   PREDICTED: hypothetical protein 
BAT2                  0.052   HLA-B associated transcript-2 
LOC100293975          0.050   PREDICTED: hypothetical protein 
LOC100291634          0.050   PREDICTED: hypothetical protein XP_002346062 
LOC100291096          0.050   PREDICTED: hypothetical protein XP_002346952 
LOC100287232          0.050   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.050   PREDICTED: hypothetical protein 
CDAN1                 0.047   codanin 1 
HOXD11                0.045   homeobox D11 
PPP1R10               0.045   protein phosphatase 1, regulatory subunit 10 
LOC100287514          0.045   PREDICTED: hypothetical protein XP_002343754 
FLJ37078              0.042   hypothetical protein LOC222183 
ZIC2                  0.039   zinc finger protein of the cerebellum 2 
FOXQ1                 0.039   forkhead box Q1 
LOC100129036          0.039   PREDICTED: hypothetical protein 
TLE2                  0.039   transducin-like enhancer protein 2 isoform 2 
TLE2                  0.039   transducin-like enhancer protein 2 isoform 1 
HOXB3                 0.039   homeobox B3 
SRRM2                 0.039   splicing coactivator subunit SRm300 
COL3A1                0.039   collagen type III alpha 1 preproprotein 
LOC100291835          0.039   PREDICTED: hypothetical protein XP_002346266 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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