Guide to the Human Genome
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Search of human proteins with 169214385

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169214385 PREDICTED: hypothetical protein [Homo sapiens]
         (277 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169213977 PREDICTED: hypothetical protein [Homo sapiens]           600   e-172
gi|169214385 PREDICTED: hypothetical protein [Homo sapiens]           600   e-172
gi|169213314 PREDICTED: hypothetical protein [Homo sapiens]           600   e-172
gi|158854042 hypothetical protein LOC222183 [Homo sapiens]             42   6e-04
gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo...    41   0.001
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]            41   0.001
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]            41   0.001
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]            41   0.001
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]          40   0.002
gi|169167813 PREDICTED: hypothetical protein [Homo sapiens]            40   0.002
gi|169167899 PREDICTED: hypothetical protein [Homo sapiens]            40   0.002
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H...    40   0.002
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho...    40   0.002
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom...    40   0.002
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]     40   0.002
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]     40   0.002
gi|139394604 bromo adjacent homology domain containing 1 [Homo s...    40   0.002
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s...    40   0.003
gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s...    40   0.003
gi|13994253 Golgi reassembly stacking protein 1 [Homo sapiens]         40   0.003
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      39   0.004
gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]            39   0.005
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]       39   0.007
gi|169209217 PREDICTED: similar to hCG2042704 [Homo sapiens]           39   0.007
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]      39   0.007
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]       39   0.007
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]       39   0.007
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]       39   0.007
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]       39   0.007
gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]       39   0.007

>gi|169213977 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 277

 Score =  600 bits (1547), Expect = e-172
 Identities = 277/277 (100%), Positives = 277/277 (100%)

Query: 1   MGRRGFAELGRAQTTARGRYNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRGETHK 60
           MGRRGFAELGRAQTTARGRYNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRGETHK
Sbjct: 1   MGRRGFAELGRAQTTARGRYNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRGETHK 60

Query: 61  SRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC 120
           SRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC
Sbjct: 61  SRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC 120

Query: 121 RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP 180
           RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP
Sbjct: 121 RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP 180

Query: 181 YAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARLPGFLP 240
           YAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARLPGFLP
Sbjct: 181 YAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARLPGFLP 240

Query: 241 DCWGVSLAPHHVRWCAEVRVCAGEGPLLGLLDCKEQV 277
           DCWGVSLAPHHVRWCAEVRVCAGEGPLLGLLDCKEQV
Sbjct: 241 DCWGVSLAPHHVRWCAEVRVCAGEGPLLGLLDCKEQV 277


>gi|169214385 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 277

 Score =  600 bits (1547), Expect = e-172
 Identities = 277/277 (100%), Positives = 277/277 (100%)

Query: 1   MGRRGFAELGRAQTTARGRYNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRGETHK 60
           MGRRGFAELGRAQTTARGRYNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRGETHK
Sbjct: 1   MGRRGFAELGRAQTTARGRYNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRGETHK 60

Query: 61  SRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC 120
           SRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC
Sbjct: 61  SRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC 120

Query: 121 RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP 180
           RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP
Sbjct: 121 RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP 180

Query: 181 YAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARLPGFLP 240
           YAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARLPGFLP
Sbjct: 181 YAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARLPGFLP 240

Query: 241 DCWGVSLAPHHVRWCAEVRVCAGEGPLLGLLDCKEQV 277
           DCWGVSLAPHHVRWCAEVRVCAGEGPLLGLLDCKEQV
Sbjct: 241 DCWGVSLAPHHVRWCAEVRVCAGEGPLLGLLDCKEQV 277


>gi|169213314 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 277

 Score =  600 bits (1547), Expect = e-172
 Identities = 277/277 (100%), Positives = 277/277 (100%)

Query: 1   MGRRGFAELGRAQTTARGRYNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRGETHK 60
           MGRRGFAELGRAQTTARGRYNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRGETHK
Sbjct: 1   MGRRGFAELGRAQTTARGRYNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRGETHK 60

Query: 61  SRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC 120
           SRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC
Sbjct: 61  SRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC 120

Query: 121 RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP 180
           RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP
Sbjct: 121 RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP 180

Query: 181 YAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARLPGFLP 240
           YAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARLPGFLP
Sbjct: 181 YAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARLPGFLP 240

Query: 241 DCWGVSLAPHHVRWCAEVRVCAGEGPLLGLLDCKEQV 277
           DCWGVSLAPHHVRWCAEVRVCAGEGPLLGLLDCKEQV
Sbjct: 241 DCWGVSLAPHHVRWCAEVRVCAGEGPLLGLLDCKEQV 277


>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
          Length = 653

 Score = 42.0 bits (97), Expect = 6e-04
 Identities = 56/191 (29%), Positives = 72/191 (37%), Gaps = 38/191 (19%)

Query: 36  QAWGGGGEAGAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSP- 94
           Q  GG    GA +R    RR    + RSR  ++       R P P  P G+   RSLS  
Sbjct: 373 QGRGGRAAGGAGRR----RRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSS--RSLSRA 426

Query: 95  ---------RPVPGSEPSTGTRVGRQGHGERSRRCRCCLGDAASPWAQSLPYTQVQGGRG 145
                    R  PG  P  G+  G  GHG+R++         A P A + P     G RG
Sbjct: 427 RSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKE----RPPRARP-ASTSPSPGAHGRRG 481

Query: 146 FLPE------EVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPE 199
             PE        GPH R    + +     + SR       P++  SR P+  K     P 
Sbjct: 482 G-PEGKSSSRSPGPHPRSWSSSRS----PSKSRSRSAEKRPHS-PSRSPSPKK-----PL 530

Query: 200 GGDGDPEGNRR 210
             D D EG  R
Sbjct: 531 SRDKDGEGRAR 541



 Score = 36.2 bits (82), Expect = 0.032
 Identities = 66/252 (26%), Positives = 82/252 (32%), Gaps = 81/252 (32%)

Query: 33  WGR-QAWGGGGE-AGAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAGAGVP- 89
           WG  Q  GG G+ +GAH    G R G  H    +        P++ SP     A A  P 
Sbjct: 308 WGSPQRNGGSGQRSGAH----GGRPGSAHSPPDK--------PSSPSPRVRDKAAAAAPT 355

Query: 90  ------RSLSPRPVPGSEPSTGTRVGRQGHGERSRRCRCCLGDAASPWAQSLPYTQVQGG 143
                  S SPR  P S+   G   G  G   R RR R     +AS              
Sbjct: 356 PPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSAS-------------- 401

Query: 144 RGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEG--- 200
                    P +RG              RR   P PP  G SR  +R +    +  G   
Sbjct: 402 --------APRRRG--------------RRRPRPAPP-RGSSRSLSRARSSSDSGSGRGA 438

Query: 201 -GDGDPE----------GNRRLRPPPLSRRCFRS--------GGAAVFTTTARLPGFLPD 241
            G G PE          G R    PP +R    S         G     +++R PG  P 
Sbjct: 439 PGPG-PEPGSERGHGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPR 497

Query: 242 CWGVSLAPHHVR 253
            W  S +P   R
Sbjct: 498 SWSSSRSPSKSR 509



 Score = 28.1 bits (61), Expect = 8.8
 Identities = 40/154 (25%), Positives = 50/154 (32%), Gaps = 20/154 (12%)

Query: 52  GTRRGETHKSRSRDGSTGRGGPNARSPHPLGP--------AGAGVPRSLSPRPVPGSEPS 103
           G+RR   H+SRS            + PH   P        +G+    SLS        PS
Sbjct: 217 GSRRKRRHRSRSSKCKRKEKNKEKKRPHTESPGRRSHRHSSGSSHSPSLSSHYSDSRSPS 276

Query: 104 ----TGTRVGRQGHGERSRRCRCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQE 159
                    GR+   +RS   R       S W       Q  GG G   +  G H  G+ 
Sbjct: 277 RLSPKHRDEGRKTGSQRSSGSRSPSPSGGSGWGS----PQRNGGSG---QRSGAH-GGRP 328

Query: 160 GAGTGWGDATLSRRNCTPTPPYAGGSREPARGKE 193
           G+     D   S          A     PARGKE
Sbjct: 329 GSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKE 362


>gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo
           sapiens]
          Length = 3312

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 47/183 (25%), Positives = 60/183 (32%), Gaps = 32/183 (17%)

Query: 45  GAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVP------ 98
           G+ +R  G   G     R    S GR GP  R     G   +GVP S +  P+P      
Sbjct: 119 GSRERETGQGPGSVLYWRPEVSSCGRTGPLQRGSLSPGALSSGVPGSGNSSPLPSDFLIR 178

Query: 99  --GSEPSTGTRVGRQGHGERSRRCRCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQR 156
             G +P +  R    G  +R    RCC       WA          G+G           
Sbjct: 179 HHGPKPVSSQRNAGTGSRKRVGTARCC----GELWATG------SKGQG----------- 217

Query: 157 GQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPL 216
             E A T   + T  RRNC P    +G   + A  +     P  G    E      P P 
Sbjct: 218 --ERATTSGAERTAPRRNCLPGASGSGPELDSA-PRTARTAPASGSAPRESRTAPEPAPK 274

Query: 217 SRR 219
             R
Sbjct: 275 RMR 277


>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 426

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 43/150 (28%), Positives = 52/150 (34%), Gaps = 19/150 (12%)

Query: 40  GGGEAGAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAG---AGVPRSLSPRP 96
           GG   GA +R    R GE  + R R      G P    P P GPA    AG  R+     
Sbjct: 240 GGEVVGARRR----RGGEERRVRGRRQGCALGSP----PIPAGPAAPGRAGERRAARQWR 291

Query: 97  VPGSEPSTGTRVGRQGHG------ERSRRCRCCLGDAASPWAQSLPYTQV--QGGRGFLP 148
             G  P    R G QG G       R+R    CL  + + W    PY  +   G R   P
Sbjct: 292 KRGGGPGVSPREGAQGEGVRGGVTPRARGSSTCLRPSPATWQGGAPYRAIFAAGPRLSAP 351

Query: 149 EEVGPHQRGQEGAGTGWGDATLSRRNCTPT 178
                   G   A     +   SRR   P+
Sbjct: 352 SAEAEEVPGGHTASNPTYEPLSSRRTKAPS 381


>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 520

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 43/150 (28%), Positives = 52/150 (34%), Gaps = 19/150 (12%)

Query: 40  GGGEAGAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAG---AGVPRSLSPRP 96
           GG   GA +R    R GE  + R R      G P    P P GPA    AG  R+     
Sbjct: 334 GGEVVGARRR----RGGEERRVRGRRQGCALGSP----PIPAGPAAPGRAGERRAARQWR 385

Query: 97  VPGSEPSTGTRVGRQGHG------ERSRRCRCCLGDAASPWAQSLPYTQV--QGGRGFLP 148
             G  P    R G QG G       R+R    CL  + + W    PY  +   G R   P
Sbjct: 386 KRGGGPGVSPREGAQGEGVRGGVTPRARGSSTCLRPSPATWQGGAPYRAIFAAGPRLSAP 445

Query: 149 EEVGPHQRGQEGAGTGWGDATLSRRNCTPT 178
                   G   A     +   SRR   P+
Sbjct: 446 SAEAEEVPGGHTASNPTYEPLSSRRTKAPS 475


>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 520

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 43/150 (28%), Positives = 52/150 (34%), Gaps = 19/150 (12%)

Query: 40  GGGEAGAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAG---AGVPRSLSPRP 96
           GG   GA +R    R GE  + R R      G P    P P GPA    AG  R+     
Sbjct: 334 GGEVVGARRR----RGGEERRVRGRRQGCALGSP----PIPAGPAAPGRAGERRAARQWR 385

Query: 97  VPGSEPSTGTRVGRQGHG------ERSRRCRCCLGDAASPWAQSLPYTQV--QGGRGFLP 148
             G  P    R G QG G       R+R    CL  + + W    PY  +   G R   P
Sbjct: 386 KRGGGPGVSPREGAQGEGVRGGVTPRARGSSTCLRPSPATWQGGAPYRAIFAAGPRLSAP 445

Query: 149 EEVGPHQRGQEGAGTGWGDATLSRRNCTPT 178
                   G   A     +   SRR   P+
Sbjct: 446 SAEAEEVPGGHTASNPTYEPLSSRRTKAPS 475


>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
          Length = 1192

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 49/184 (26%), Positives = 64/184 (34%), Gaps = 30/184 (16%)

Query: 73  PNARSPHPLGPAGAGVPRSLSPRPVPGSEP-------------STGTRVGRQGHGERSRR 119
           P+   P P G AG G+P S SP P  GS                T T  G +  G +   
Sbjct: 148 PSWGGPEPEGRAGGGIPGSSSPHPGTGSRRLKVAPPPPAPKPCKTVTTSGAKAGGGKGAG 207

Query: 120 CRCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTP 179
            R         W +S    +V+G +                A  G G +T S        
Sbjct: 208 SRL-------SWPESEGKPRVKGSKSSAGTGASV-SAAATAAAAGGGGSTASTSGGVGAG 259

Query: 180 PYAGGSREPARGKEGVWTPEGGD---GDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARLP 236
             A G   P +GK    T +  D   G P G+    PPPL+     S   AV   +A+ P
Sbjct: 260 AGARGKLSPRKGKSK--TLDNSDLHPGPPAGS----PPPLTLPPTPSPATAVTAASAQPP 313

Query: 237 GFLP 240
           G  P
Sbjct: 314 GPAP 317


>gi|169167813 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 260

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 46/152 (30%), Positives = 56/152 (36%), Gaps = 31/152 (20%)

Query: 73  PNARSPHPLGP-------------AGAGVPRSLSPR-PVPGSEPSTGTRVGRQGHGERSR 118
           P++RSP P+ P             AGA    +  PR P PGS P  G    R+ H   S 
Sbjct: 68  PDSRSPTPVPPSFASDQRARVRVCAGANGAGASGPRGPSPGSPPPPGLSSSRRRHRHCSS 127

Query: 119 RCRCC------LGDAASPW---AQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDAT 169
           RC  C      L     PW   A  L   Q  GG      E G  + G+E    G G   
Sbjct: 128 RCCRCRRRRRSLALLLFPWLRPAWQLAGCQAWGG------ERGRGETGREDGRAGVGKG- 180

Query: 170 LSRRNCTPTPPYAGGSREPARGKEGVWTPEGG 201
              R+   TP  A    +P    EG    +GG
Sbjct: 181 -GHRSPGVTPRLARSPPDPGCRSEGEADVQGG 211


>gi|169167899 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 260

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 46/152 (30%), Positives = 56/152 (36%), Gaps = 31/152 (20%)

Query: 73  PNARSPHPLGP-------------AGAGVPRSLSPR-PVPGSEPSTGTRVGRQGHGERSR 118
           P++RSP P+ P             AGA    +  PR P PGS P  G    R+ H   S 
Sbjct: 68  PDSRSPTPVPPSFASDQRARVRVCAGANGAGASGPRGPSPGSPPPPGLSSSRRRHRHCSS 127

Query: 119 RCRCC------LGDAASPW---AQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDAT 169
           RC  C      L     PW   A  L   Q  GG      E G  + G+E    G G   
Sbjct: 128 RCCRCRRRRRSLALLLFPWLRPAWQLAGCQAWGG------ERGRGETGREDGRAGVGKG- 180

Query: 170 LSRRNCTPTPPYAGGSREPARGKEGVWTPEGG 201
              R+   TP  A    +P    EG    +GG
Sbjct: 181 -GHRSPGVTPRLARSPPDPGCRSEGEADVQGG 211


>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
           sapiens]
          Length = 828

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 55/168 (32%), Positives = 64/168 (38%), Gaps = 24/168 (14%)

Query: 54  RRGE--THKSRSRDGSTG-RGGPNARSPHPL----GPAGAGVPRSL-SPRPVPGSEPSTG 105
           RRG+  T  S   DG  G +G P    P  L    G  GA   R L  PR   G+    G
Sbjct: 425 RRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPG 484

Query: 106 TRVGRQGHGERSRRCRCCLGDAASPWAQS---LPYTQVQGGRGFLPEEVGPHQRGQEGAG 162
            +  R   G+   R     GD+  P  +     P     G RG   E+  P  RG EG  
Sbjct: 485 KQGSRGDPGDAGPR-----GDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEG-- 537

Query: 163 TGWGDATLS----RRNCTPTPPYAGGSREPA-RGKEGVWTPEGGDGDP 205
            G GD  L     R+     P   G   EP  RG  GV  PEG  G P
Sbjct: 538 -GRGDFGLKGEPGRKGEKGEPADPGPPGEPGPRGPRGVPGPEGEPGPP 584



 Score = 32.3 bits (72), Expect = 0.47
 Identities = 47/179 (26%), Positives = 60/179 (33%), Gaps = 36/179 (20%)

Query: 39  GGGGEAGAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVP 98
           G  GE GA  R         + +  + G  GR GP         P   G P +  P   P
Sbjct: 307 GEKGEFGADGRKGAPGLAGKNGTDGQKGKLGRIGP---------PGCKGDPGNRGPDGYP 357

Query: 99  GSEPSTGTRVGRQGHGERSRRCRCCLGDAASPWAQSLP-YTQVQGGRGFLPEEVGPHQRG 157
           G   S G R  + G G+  R           P  +  P     +G +G+      P   G
Sbjct: 358 GEAGSPGERGDQGGKGDPGR-----------PGRRGPPGEIGAKGSKGYQGNSGAPGSPG 406

Query: 158 QEGAGTGWGDATLSRRNCTPTPPYAGGSRE---PARGKEGVWTPEG--GDGDPEGNRRL 211
            +GA  G G          P  P     R      +G  G   P+G  GD  PEG R L
Sbjct: 407 VKGAKGGPG----------PRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGL 455


>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
           sapiens]
          Length = 918

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 55/168 (32%), Positives = 64/168 (38%), Gaps = 24/168 (14%)

Query: 54  RRGE--THKSRSRDGSTG-RGGPNARSPHPL----GPAGAGVPRSL-SPRPVPGSEPSTG 105
           RRG+  T  S   DG  G +G P    P  L    G  GA   R L  PR   G+    G
Sbjct: 425 RRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPG 484

Query: 106 TRVGRQGHGERSRRCRCCLGDAASPWAQS---LPYTQVQGGRGFLPEEVGPHQRGQEGAG 162
            +  R   G+   R     GD+  P  +     P     G RG   E+  P  RG EG  
Sbjct: 485 KQGSRGDPGDAGPR-----GDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEG-- 537

Query: 163 TGWGDATLS----RRNCTPTPPYAGGSREPA-RGKEGVWTPEGGDGDP 205
            G GD  L     R+     P   G   EP  RG  GV  PEG  G P
Sbjct: 538 -GRGDFGLKGEPGRKGEKGEPADPGPPGEPGPRGPRGVPGPEGEPGPP 584



 Score = 32.3 bits (72), Expect = 0.47
 Identities = 47/179 (26%), Positives = 60/179 (33%), Gaps = 36/179 (20%)

Query: 39  GGGGEAGAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVP 98
           G  GE GA  R         + +  + G  GR GP         P   G P +  P   P
Sbjct: 307 GEKGEFGADGRKGAPGLAGKNGTDGQKGKLGRIGP---------PGCKGDPGNRGPDGYP 357

Query: 99  GSEPSTGTRVGRQGHGERSRRCRCCLGDAASPWAQSLP-YTQVQGGRGFLPEEVGPHQRG 157
           G   S G R  + G G+  R           P  +  P     +G +G+      P   G
Sbjct: 358 GEAGSPGERGDQGGKGDPGR-----------PGRRGPPGEIGAKGSKGYQGNSGAPGSPG 406

Query: 158 QEGAGTGWGDATLSRRNCTPTPPYAGGSRE---PARGKEGVWTPEG--GDGDPEGNRRL 211
            +GA  G G          P  P     R      +G  G   P+G  GD  PEG R L
Sbjct: 407 VKGAKGGPG----------PRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGL 455


>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
           sapiens]
          Length = 1019

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 55/168 (32%), Positives = 64/168 (38%), Gaps = 24/168 (14%)

Query: 54  RRGE--THKSRSRDGSTG-RGGPNARSPHPL----GPAGAGVPRSL-SPRPVPGSEPSTG 105
           RRG+  T  S   DG  G +G P    P  L    G  GA   R L  PR   G+    G
Sbjct: 425 RRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPG 484

Query: 106 TRVGRQGHGERSRRCRCCLGDAASPWAQS---LPYTQVQGGRGFLPEEVGPHQRGQEGAG 162
            +  R   G+   R     GD+  P  +     P     G RG   E+  P  RG EG  
Sbjct: 485 KQGSRGDPGDAGPR-----GDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEG-- 537

Query: 163 TGWGDATLS----RRNCTPTPPYAGGSREPA-RGKEGVWTPEGGDGDP 205
            G GD  L     R+     P   G   EP  RG  GV  PEG  G P
Sbjct: 538 -GRGDFGLKGEPGRKGEKGEPADPGPPGEPGPRGPRGVPGPEGEPGPP 584



 Score = 32.3 bits (72), Expect = 0.47
 Identities = 47/179 (26%), Positives = 60/179 (33%), Gaps = 36/179 (20%)

Query: 39  GGGGEAGAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVP 98
           G  GE GA  R         + +  + G  GR GP         P   G P +  P   P
Sbjct: 307 GEKGEFGADGRKGAPGLAGKNGTDGQKGKLGRIGP---------PGCKGDPGNRGPDGYP 357

Query: 99  GSEPSTGTRVGRQGHGERSRRCRCCLGDAASPWAQSLP-YTQVQGGRGFLPEEVGPHQRG 157
           G   S G R  + G G+  R           P  +  P     +G +G+      P   G
Sbjct: 358 GEAGSPGERGDQGGKGDPGR-----------PGRRGPPGEIGAKGSKGYQGNSGAPGSPG 406

Query: 158 QEGAGTGWGDATLSRRNCTPTPPYAGGSRE---PARGKEGVWTPEG--GDGDPEGNRRL 211
            +GA  G G          P  P     R      +G  G   P+G  GD  PEG R L
Sbjct: 407 VKGAKGGPG----------PRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGL 455


>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
          Length = 2285

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 40/138 (28%), Positives = 54/138 (39%), Gaps = 19/138 (13%)

Query: 36  QAWGGGGEAGAHQRICGTRRGETHKSRSRDGSTGRGG-PNARSPHPLGPAGAGVPRSLSP 94
           Q WG    A A     G  +  +H +    GS+G GG P AR+P P  P        + P
Sbjct: 335 QCWGAAAAAAAAAAASGGAQQRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQ--MGKMRP 392

Query: 95  RPVPGSEP---STGTRVG-RQGHG--------ERSRRCRCCLGDAASPWAQSLPYTQVQG 142
           +P  G+ P     G   G +QGHG        +  +R    +   A      L YTQ   
Sbjct: 393 QPYGGTNPYSQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIP 452

Query: 143 GRGFLPEEVGPHQRGQEG 160
             G    + GP   GQ+G
Sbjct: 453 PYG----QQGPSGYGQQG 466


>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
          Length = 2068

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 40/138 (28%), Positives = 54/138 (39%), Gaps = 19/138 (13%)

Query: 36  QAWGGGGEAGAHQRICGTRRGETHKSRSRDGSTGRGG-PNARSPHPLGPAGAGVPRSLSP 94
           Q WG    A A     G  +  +H +    GS+G GG P AR+P P  P        + P
Sbjct: 335 QCWGAAAAAAAAAAASGGAQQRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQ--MGKMRP 392

Query: 95  RPVPGSEP---STGTRVG-RQGHG--------ERSRRCRCCLGDAASPWAQSLPYTQVQG 142
           +P  G+ P     G   G +QGHG        +  +R    +   A      L YTQ   
Sbjct: 393 QPYGGTNPYSQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIP 452

Query: 143 GRGFLPEEVGPHQRGQEG 160
             G    + GP   GQ+G
Sbjct: 453 PYG----QQGPSGYGQQG 466


>gi|139394604 bromo adjacent homology domain containing 1 [Homo
           sapiens]
          Length = 780

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 50  ICGTRR---GETHKSRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEP 102
           + GTRR   G+ H+SR RD +TG    + + P  LG  G G  R LSP P P   P
Sbjct: 140 LAGTRRSRAGDPHRSRDRDRATGGWSSSKKRPR-LGDLGGG-SRDLSPEPAPDEGP 193


>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
           sapiens]
          Length = 921

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 56/185 (30%), Positives = 70/185 (37%), Gaps = 26/185 (14%)

Query: 66  GSTGRGGP-----NARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC 120
           GSTG  G      N+  P   GP G   PR   P+ +PGS    G  VG  G   +    
Sbjct: 589 GSTGAPGKPGQMGNSGKPGQQGPPGEVGPR--GPQGLPGSRGELGP-VGSPGLPGK---- 641

Query: 121 RCCLGDAASPWAQSLP----YTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDA-TLSRRNC 175
              LG   SP    LP       ++G RG + E   P  +G++GA    G+A        
Sbjct: 642 ---LGSLGSPGLPGLPGPPGLPGMKGDRGVVGE---PGPKGEQGASGEEGEAGERGELGD 695

Query: 176 TPTPPYAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARL 235
              P   G +  P  G+ G+  PEG  G P G    R PP  R      GA         
Sbjct: 696 IGLPGPKGSAGNP--GEPGLRGPEGSRGLP-GVEGPRGPPGPRGVQGEQGATGLPGVQGP 752

Query: 236 PGFLP 240
           PG  P
Sbjct: 753 PGRAP 757



 Score = 28.5 bits (62), Expect = 6.7
 Identities = 42/135 (31%), Positives = 53/135 (39%), Gaps = 20/135 (14%)

Query: 62  RSRDGST---GRGGPNARSPHPLGPAGA-GVPRSLSPRPVPGSE---PSTGTRVGRQGHG 114
           R   G+T   GR GP    P P GP G  G P  +  R +PG +    + G R  +   G
Sbjct: 783 RPDSGATGLPGRPGP----PGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLG 838

Query: 115 ERSRRCRCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRN 174
           E+  R     G    P A  LP     G  G  P   G  + G++G     G A +    
Sbjct: 839 EKGERGPPGRGPNGLPGAIGLP-----GDPG--PASYG--RNGRDGERGPPGVAGIPGVP 889

Query: 175 CTPTPPYAGGSREPA 189
             P PP   G  EPA
Sbjct: 890 GPPGPPGLPGFCEPA 904


>gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo
           sapiens]
          Length = 678

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 56/185 (30%), Positives = 70/185 (37%), Gaps = 26/185 (14%)

Query: 66  GSTGRGGP-----NARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC 120
           GSTG  G      N+  P   GP G   PR   P+ +PGS    G  VG  G   +    
Sbjct: 346 GSTGAPGKPGQMGNSGKPGQQGPPGEVGPR--GPQGLPGSRGELGP-VGSPGLPGK---- 398

Query: 121 RCCLGDAASPWAQSLP----YTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDA-TLSRRNC 175
              LG   SP    LP       ++G RG + E   P  +G++GA    G+A        
Sbjct: 399 ---LGSLGSPGLPGLPGPPGLPGMKGDRGVVGE---PGPKGEQGASGEEGEAGERGELGD 452

Query: 176 TPTPPYAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARL 235
              P   G +  P  G+ G+  PEG  G P G    R PP  R      GA         
Sbjct: 453 IGLPGPKGSAGNP--GEPGLRGPEGSRGLP-GVEGPRGPPGPRGVQGEQGATGLPGVQGP 509

Query: 236 PGFLP 240
           PG  P
Sbjct: 510 PGRAP 514



 Score = 28.5 bits (62), Expect = 6.7
 Identities = 42/135 (31%), Positives = 53/135 (39%), Gaps = 20/135 (14%)

Query: 62  RSRDGST---GRGGPNARSPHPLGPAGA-GVPRSLSPRPVPGSE---PSTGTRVGRQGHG 114
           R   G+T   GR GP    P P GP G  G P  +  R +PG +    + G R  +   G
Sbjct: 540 RPDSGATGLPGRPGP----PGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLG 595

Query: 115 ERSRRCRCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRN 174
           E+  R     G    P A  LP     G  G  P   G  + G++G     G A +    
Sbjct: 596 EKGERGPPGRGPNGLPGAIGLP-----GDPG--PASYG--RNGRDGERGPPGVAGIPGVP 646

Query: 175 CTPTPPYAGGSREPA 189
             P PP   G  EPA
Sbjct: 647 GPPGPPGLPGFCEPA 661


>gi|13994253 Golgi reassembly stacking protein 1 [Homo sapiens]
          Length = 440

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 30/90 (33%), Positives = 37/90 (41%), Gaps = 8/90 (8%)

Query: 20  YNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPH 79
           YN    + R        AWGG G  G     CG   G  H+  ++  S  +  P    P 
Sbjct: 166 YNSKSDSCREVTVTPNAAWGGEGSLG-----CGIGYGYLHRIPTQPPSYHKKPPGTPPPS 220

Query: 80  PLGPAGAGVPRSLSPRPVPGSEPS--TGTR 107
            L P GA  P +L P P P   PS  TG+R
Sbjct: 221 AL-PLGAPPPDALPPGPTPEDSPSLETGSR 249


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 47/162 (29%), Positives = 60/162 (37%), Gaps = 14/162 (8%)

Query: 61  SRSRDGSTGRGGPNARSPHPLGPAG-AGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRR 119
           +R  DG+TG  GP    P P GPAG  G P ++  +   G +   G+   +   GE    
Sbjct: 321 ARGNDGATGAAGP----PGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPP 376

Query: 120 CRC-CLGDAASPWAQSLPYTQ-VQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTP 177
                 G A +P A   P  +   G  G       P  RG  G     G       +  P
Sbjct: 377 GPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEP 436

Query: 178 TPPYA----GGSREPARGKEGVWTPEGGDGDPEGNRRLRPPP 215
             P +    G   EP  G  GV  P G  G+ EG R  R  P
Sbjct: 437 GAPGSKGDTGAKGEP--GPVGVQGPPGPAGE-EGKRGARGEP 475



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 50/174 (28%), Positives = 55/174 (31%), Gaps = 38/174 (21%)

Query: 65  DGSTGRGGPNARS--PHPLGPAG----------------AGVPRSLSPRPVPGSEPSTGT 106
           DG TG  GP  +   P P GP G                AG P     R VPG   + G 
Sbjct: 550 DGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGP 609

Query: 107 -----RVGRQG-------HGERSRRCRCCLGDAASPWAQSLPYTQVQGGRGFLPEEVG-P 153
                  G QG        GER  +     G A SP  Q LP      G    P E G P
Sbjct: 610 AGKDGEAGAQGPPGPAGPAGERGEQ-----GPAGSPGFQGLPGPAGPPGEAGKPGEQGVP 664

Query: 154 HQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSR--EPARGKEGVWTPEGGDGDP 205
              G  G     G+           PP   G R    A G +G     G  G P
Sbjct: 665 GDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAP 718



 Score = 37.4 bits (85), Expect = 0.014
 Identities = 42/155 (27%), Positives = 54/155 (34%), Gaps = 34/155 (21%)

Query: 66   GSTGRGGPNARS-----PHPLGPAG-AGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRR 119
            G  G+ GP+  S     P P+GP G AG P        PG+E S G        G+R   
Sbjct: 980  GEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGE- 1038

Query: 120  CRCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTP 179
                 G A  P A   P           P  VGP  +  +   TG            P  
Sbjct: 1039 ----TGPAGPPGAPGAPGA---------PGPVGPAGKSGDRGETG------------PAG 1073

Query: 180  PYAGGSREPARGKEGVWTPEGGDGD--PEGNRRLR 212
            P        ARG  G   P G  G+   +G+R ++
Sbjct: 1074 PAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIK 1108



 Score = 37.0 bits (84), Expect = 0.019
 Identities = 48/171 (28%), Positives = 56/171 (32%), Gaps = 39/171 (22%)

Query: 65  DGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQG-HGERSRRCRCC 123
           DG+ G  GP      P  P   G P  + PR +PG         GR G  G    R    
Sbjct: 274 DGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGER-------GRPGAPGPAGARGNDG 326

Query: 124 LGDAASPWAQSLP-----YTQVQGGRGFLPEEVGPH-QRGQEG----------------- 160
              AA P   + P     +    G +G    E GP   RG EG                 
Sbjct: 327 ATGAAGPPGPTGPAGPPGFPGAVGAKG----EAGPQGPRGSEGPQGVRGEPGPPGPAGAA 382

Query: 161 --AGTGWGDATLSRRNCTPTPPYAGGSREP-ARGKEGVWTPEGGDGDPEGN 208
             AG    D     +     P  AG    P ARG  G   P GG   P+GN
Sbjct: 383 GPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGP-GGPPGPKGN 432



 Score = 33.1 bits (74), Expect = 0.27
 Identities = 40/151 (26%), Positives = 50/151 (33%), Gaps = 11/151 (7%)

Query: 55  RGETHKSRSRDGSTGRGGPNARS-PHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGH 113
           +GE+  S     +  RG P  R  P P GPAG   P     +P    EP      G  G 
Sbjct: 781 KGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGP 840

Query: 114 GERSRRCRCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRR 173
              +       G A  P    +      G +G       P   G  GA    G    S  
Sbjct: 841 PGPA-------GPAGPP--GPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGN 891

Query: 174 NCTPTPPYAGGSREPARGKEGVWTPEGGDGD 204
              P PP   G +E  +G  G   P G  G+
Sbjct: 892 AGPPGPPGPAG-KEGGKGPRGETGPAGRPGE 921



 Score = 31.6 bits (70), Expect = 0.80
 Identities = 46/165 (27%), Positives = 54/165 (32%), Gaps = 29/165 (17%)

Query: 62  RSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGT--RVGRQGH-GERSR 118
           R   G  G  GP      P  P   G    + PR  PG     G     G+ G  GER  
Sbjct: 187 RGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGER-- 244

Query: 119 RCRCCLGDAASPWAQSLPYTQ----VQGGRGF--LPEEVG----------PHQRGQEGAG 162
                 G      A+ LP T     ++G RGF  L    G          P   G+ GA 
Sbjct: 245 ------GPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAP 298

Query: 163 TGWGDATLSRRNCTPTPPYAGGSR--EPARGKEGVWTPEGGDGDP 205
              G   L      P  P   G+R  + A G  G   P G  G P
Sbjct: 299 GQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPP 343



 Score = 31.6 bits (70), Expect = 0.80
 Identities = 40/154 (25%), Positives = 49/154 (31%), Gaps = 19/154 (12%)

Query: 62  RSRDGSTGRGGPNARSPHPLGPAG-AGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC 120
           +  DGS G+ G    +  P+GP G AG P         G    TG R      GE     
Sbjct: 751 KGADGSPGKDGVRGLTG-PIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPG 809

Query: 121 RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP 180
               G A  P A   P  + + G      + GP   G  G                P  P
Sbjct: 810 PA--GFAGPPGADGQPGAKGEPGDAGAKGDAGPP--GPAGPAG-------------PPGP 852

Query: 181 YAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPP 214
                   A+G  G   P G  G P    R+ PP
Sbjct: 853 IGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPP 886



 Score = 28.1 bits (61), Expect = 8.8
 Identities = 42/151 (27%), Positives = 49/151 (32%), Gaps = 29/151 (19%)

Query: 61   SRSRDGSTGRGGPNARSPHPLGPAGA----GVPRSLSPRPVPGSEPSTGTRVGRQGHGER 116
            S  RDGS G  G    +  P GP GA    G P  + P    G    TG        G  
Sbjct: 1023 SPGRDGSPGAKGDRGET-GPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPV 1081

Query: 117  SRRCRCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCT 176
              R        A P          QG RG         + G++G     G    S     
Sbjct: 1082 GAR------GPAGP----------QGPRG------DKGETGEQGDRGIKGHRGFSGLQGP 1119

Query: 177  PTPPYAGGSREP--ARGKEGVWTPEGGDGDP 205
            P PP + G + P  A G  G   P G  G P
Sbjct: 1120 PGPPGSPGEQGPSGASGPAGPRGPPGSAGAP 1150


>gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 251

 Score = 38.9 bits (89), Expect = 0.005
 Identities = 65/240 (27%), Positives = 83/240 (34%), Gaps = 60/240 (25%)

Query: 29  ITQRWGRQAWGGGGEAGAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAGAGV 88
           I +R  +Q  GGGG  G H+          H SR+         P  R+P    PA +  
Sbjct: 2   IRKRPHQQGGGGGGGQGRHR----------HSSRA---------PGTRTPAT--PARSPR 40

Query: 89  PRSLSPRPVPGSEPSTGTRVGRQGHGERSRRCRCCLGDAASPWAQSLPYTQVQGGRGFLP 148
           P   +PRP PG                R++      G   SP A + P      G    P
Sbjct: 41  PPLCAPRPAPG----------------RAQSPVPAAGAVPSPPAAAHPARPALRGETPAP 84

Query: 149 EEVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDPEGN 208
                   G+ G  T  G+   S R      P  GG     RG+ G   P      P  +
Sbjct: 85  --------GRRGRATTRGEVQPSVRPPLSHRPLRGGGM--GRGRPGKGPP------PNPS 128

Query: 209 RRLRP-PPLSRRCFRS----GGAAVFTTTARL--PGFLPDCWGVSLAPHHVRWCAEVRVC 261
           RRL P PP  RR + S    G AA      R   P F    WG   +  H+R    +  C
Sbjct: 129 RRLPPAPPGGRRTWLSALATGPAAGGAGRRRRSPPVFRAADWGFGRSEQHLRGLTLIISC 188


>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
          Length = 1838

 Score = 38.5 bits (88), Expect = 0.007
 Identities = 55/199 (27%), Positives = 75/199 (37%), Gaps = 60/199 (30%)

Query: 38  WGGGGEAGAHQRICGTRRGETHK--SRSRDGSTGRGGPNARS--PHPLGPAGAGV----- 88
           +GGGG+AG+   +   +  +      ++R    G  GP   +  P P+GP G+G      
Sbjct: 526 FGGGGDAGSKGPMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKGEP 585

Query: 89  -------PRSLSPRPVPGSEPSTGTRVGRQGHGERSRRCRCCLGDAASPWAQSLP-YTQV 140
                  PR +   P P  +P      GR+G              A S  A+ +P  T  
Sbjct: 586 GDVGPQGPRGVQGPPGPAGKP------GRRGR-------------AGSDGARGMPGQTGP 626

Query: 141 QGGRGF-----LPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGV 195
           +G RGF     LP E G   RG  G             +  P PP   G     RG +G 
Sbjct: 627 KGDRGFDGLAGLPGEKG--HRGDPGP------------SGPPGPPGDDGE----RGDDGE 668

Query: 196 WTPEGGDGDPEGNRRLRPP 214
             P G  G+P G R L  P
Sbjct: 669 VGPRGLPGEP-GPRGLLGP 686



 Score = 36.6 bits (83), Expect = 0.025
 Identities = 50/156 (32%), Positives = 59/156 (37%), Gaps = 35/156 (22%)

Query: 65  DGSTGRGGPNARSPHPLGPAG----AGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC 120
           +G  GRGGPN   P PLGP G     GVP       +PG         GRQG        
Sbjct: 843 EGPKGRGGPNG-DPGPLGPPGEKGKLGVP------GLPGYP-------GRQGP------- 881

Query: 121 RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP 180
           +  +G    P A        +GGRG  P + GP  RGQ G     G+         P P 
Sbjct: 882 KGSIGFPGFPGANG-----EKGGRG-TPGKPGP--RGQRGPTGPRGERGPRGITGKPGPK 933

Query: 181 YAGGSREPA--RGKEGVWTPEGGDGDPEGNRRLRPP 214
              G   PA   G+ G   P+G  G P       PP
Sbjct: 934 GNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPP 969



 Score = 35.4 bits (80), Expect = 0.055
 Identities = 44/151 (29%), Positives = 61/151 (40%), Gaps = 10/151 (6%)

Query: 62   RSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGH-GERSRRC 120
            +  +G  G  GP A SP   GPAGA  P  +  RP P   P      G  G  G +    
Sbjct: 1074 KGNEGPPGPPGP-AGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAG 1132

Query: 121  RCCL-GDAASPW-AQSLPYTQVQGGRGFLPEEVGPHQRGQEG-AGTGWGDATLSRRNCTP 177
            R  L G    P  A  +      G +G + E   P Q+G +G  G          +    
Sbjct: 1133 RDGLQGPVGLPGPAGPVGPPGEDGDKGEIGE---PGQKGSKGDKGEQGPPGPTGPQGPIG 1189

Query: 178  TPPYAGGSREPA-RGKEGVWTPEGGDGDPEG 207
             P  +G   EP  RG++G++  +G +G P G
Sbjct: 1190 QPGPSGADGEPGPRGQQGLFGQKGDEG-PRG 1219



 Score = 32.7 bits (73), Expect = 0.36
 Identities = 39/143 (27%), Positives = 50/143 (34%), Gaps = 21/143 (14%)

Query: 65   DGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRCRCCL 124
            DG  G  GP      P  P   G P  + P  +PG +  +G + G +GH          +
Sbjct: 1437 DGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPK-GEKGHPG-------LI 1488

Query: 125  GDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGG 184
            G    P  Q       +G RG       P  +G  G     G    S     P PP   G
Sbjct: 1489 GLIGPPGEQG-----EKGDRGL------PGPQGSSGPKGEQGITGPSGPIGPPGPPGLPG 1537

Query: 185  SREP--ARGKEGVWTPEGGDGDP 205
               P  A+G  G   P+G  G P
Sbjct: 1538 PPGPKGAKGSSGPTGPKGEAGHP 1560



 Score = 30.0 bits (66), Expect = 2.3
 Identities = 39/147 (26%), Positives = 51/147 (34%), Gaps = 14/147 (9%)

Query: 69   GRGGPNARSPH----PLGPAGAGVPRSLSPRPVP----GSEPSTGTRVGRQGHGERS-RR 119
            GRG P    P     P GP G   PR ++ +P P    G +   G    R  +G +    
Sbjct: 899  GRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTG 958

Query: 120  CRCCLGDAASPWAQSLP-YTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPT 178
                 G    P    LP +   +G  GF  +   P   G  G     G+         P 
Sbjct: 959  FPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPG 1018

Query: 179  PPYAGGSREPARGKEGVWTPEGGDGDP 205
            PP   G     +G  G+   EG  GDP
Sbjct: 1019 PPGPPGE----QGLPGLAGKEGTKGDP 1041


>gi|169209217 PREDICTED: similar to hCG2042704 [Homo sapiens]
          Length = 511

 Score = 38.5 bits (88), Expect = 0.007
 Identities = 61/211 (28%), Positives = 78/211 (36%), Gaps = 47/211 (22%)

Query: 19  RYNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRG--ETHKSRSRDG-STGRGGPNA 75
           R+N  R T R++Q     A  GGG A   + +   RRG    H   SR   S  R  P+A
Sbjct: 6   RHNHGRRTGRLSQ----SAREGGGWARPARAV---RRGGHPAHFCWSRPPVSRERDDPSA 58

Query: 76  RSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRCRCCLGDAASPWAQSL 135
             P P       +P S SP P      +   + GRQ      R CR            SL
Sbjct: 59  PRPVP------ALPSSPSPPPPVRRPSAAREQQGRQVPAGSLRDCRLA----------SL 102

Query: 136 PYTQVQGGRGFLPEEVGPHQR-GQEGAGTGWGDATLSRRNCTPTPPYA-GGSREPARGKE 193
           P  +   GRG       PH+  G + A    G+     R+  P      GG R P     
Sbjct: 103 PLQRPFRGRG-------PHRSLGCDAAPAALGNGRPGARSDRPCGAGGDGGGRLP----- 150

Query: 194 GVWTPEGGDGDPEGNRRLRPPPLSRRCFRSG 224
                  GD D     +  P PL+ RC+R G
Sbjct: 151 -------GDDDDNDEEQPPPLPLTGRCWRDG 174


>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
          Length = 717

 Score = 38.5 bits (88), Expect = 0.007
 Identities = 55/186 (29%), Positives = 68/186 (36%), Gaps = 22/186 (11%)

Query: 39  GGGGEAGAHQRICGTRRGETHKSRS--RDGSTG-RGGPNARSPHPLGPAGAGVPRSLSPR 95
           G  GE G         +GET ++ S    G  G +G P A  P   GP G   P  L   
Sbjct: 533 GSPGEKG--------EKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGV 584

Query: 96  PVPGSEPSTGTRVGRQG-HGERSRRCRCCLGDAASPWAQSL---PYTQVQGGRGFLPEEV 151
           P P  E       G +G  GE+  R     G    P A  L   P      G   +P   
Sbjct: 585 PGPKGEAGLDGAKGEKGFQGEKGDR-----GPLGLPGASGLDGRPGPPGTPGPIGVPGPA 639

Query: 152 GPH-QRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDPEGNRR 210
           GP  +RG +G     G    +       PP   G+R   RGK+G   P+G  GD      
Sbjct: 640 GPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNR-GERGKKGSRGPKGDKGDQGAPGL 698

Query: 211 LRPPPL 216
             P PL
Sbjct: 699 DAPCPL 704



 Score = 37.4 bits (85), Expect = 0.014
 Identities = 52/180 (28%), Positives = 65/180 (36%), Gaps = 25/180 (13%)

Query: 39  GGGGEAGAHQR-----ICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAG-AGVPRSL 92
           G  GE GA        + G +  +     S  G  G  GP    P P GP G AGV   +
Sbjct: 350 GTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPG-LPGPPGPKGEAGVDGQV 408

Query: 93  SPRPVPGSEPSTGTRVGRQG-------HGERSRRCRCCLGDAASPWAQSLPYTQVQGGRG 145
            P   PG +   G   G QG        GE  +          +   Q +    + G  G
Sbjct: 409 GPPGQPGDKGERGA-AGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPG 467

Query: 146 FLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDP 205
            LP ++GP   G  G     G+  L      P PP   G + P RGK G   P G  G P
Sbjct: 468 -LPGQIGP--PGAPGIPGQKGEIGL------PGPPGHDGEKGP-RGKPGDMGPPGPQGPP 517


>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
          Length = 655

 Score = 38.5 bits (88), Expect = 0.007
 Identities = 55/186 (29%), Positives = 68/186 (36%), Gaps = 22/186 (11%)

Query: 39  GGGGEAGAHQRICGTRRGETHKSRS--RDGSTG-RGGPNARSPHPLGPAGAGVPRSLSPR 95
           G  GE G         +GET ++ S    G  G +G P A  P   GP G   P  L   
Sbjct: 471 GSPGEKG--------EKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGV 522

Query: 96  PVPGSEPSTGTRVGRQG-HGERSRRCRCCLGDAASPWAQSL---PYTQVQGGRGFLPEEV 151
           P P  E       G +G  GE+  R     G    P A  L   P      G   +P   
Sbjct: 523 PGPKGEAGLDGAKGEKGFQGEKGDR-----GPLGLPGASGLDGRPGPPGTPGPIGVPGPA 577

Query: 152 GPH-QRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDPEGNRR 210
           GP  +RG +G     G    +       PP   G+R   RGK+G   P+G  GD      
Sbjct: 578 GPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNR-GERGKKGSRGPKGDKGDQGAPGL 636

Query: 211 LRPPPL 216
             P PL
Sbjct: 637 DAPCPL 642



 Score = 37.4 bits (85), Expect = 0.014
 Identities = 52/180 (28%), Positives = 65/180 (36%), Gaps = 25/180 (13%)

Query: 39  GGGGEAGAHQR-----ICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAG-AGVPRSL 92
           G  GE GA        + G +  +     S  G  G  GP    P P GP G AGV   +
Sbjct: 288 GTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPG-LPGPPGPKGEAGVDGQV 346

Query: 93  SPRPVPGSEPSTGTRVGRQG-------HGERSRRCRCCLGDAASPWAQSLPYTQVQGGRG 145
            P   PG +   G   G QG        GE  +          +   Q +    + G  G
Sbjct: 347 GPPGQPGDKGERGA-AGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPG 405

Query: 146 FLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDP 205
            LP ++GP   G  G     G+  L      P PP   G + P RGK G   P G  G P
Sbjct: 406 -LPGQIGP--PGAPGIPGQKGEIGL------PGPPGHDGEKGP-RGKPGDMGPPGPQGPP 455


>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
          Length = 657

 Score = 38.5 bits (88), Expect = 0.007
 Identities = 55/186 (29%), Positives = 68/186 (36%), Gaps = 22/186 (11%)

Query: 39  GGGGEAGAHQRICGTRRGETHKSRS--RDGSTG-RGGPNARSPHPLGPAGAGVPRSLSPR 95
           G  GE G         +GET ++ S    G  G +G P A  P   GP G   P  L   
Sbjct: 473 GSPGEKG--------EKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGV 524

Query: 96  PVPGSEPSTGTRVGRQG-HGERSRRCRCCLGDAASPWAQSL---PYTQVQGGRGFLPEEV 151
           P P  E       G +G  GE+  R     G    P A  L   P      G   +P   
Sbjct: 525 PGPKGEAGLDGAKGEKGFQGEKGDR-----GPLGLPGASGLDGRPGPPGTPGPIGVPGPA 579

Query: 152 GPH-QRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDPEGNRR 210
           GP  +RG +G     G    +       PP   G+R   RGK+G   P+G  GD      
Sbjct: 580 GPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNR-GERGKKGSRGPKGDKGDQGAPGL 638

Query: 211 LRPPPL 216
             P PL
Sbjct: 639 DAPCPL 644



 Score = 37.4 bits (85), Expect = 0.014
 Identities = 52/180 (28%), Positives = 65/180 (36%), Gaps = 25/180 (13%)

Query: 39  GGGGEAGAHQR-----ICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAG-AGVPRSL 92
           G  GE GA        + G +  +     S  G  G  GP    P P GP G AGV   +
Sbjct: 290 GTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPG-LPGPPGPKGEAGVDGQV 348

Query: 93  SPRPVPGSEPSTGTRVGRQG-------HGERSRRCRCCLGDAASPWAQSLPYTQVQGGRG 145
            P   PG +   G   G QG        GE  +          +   Q +    + G  G
Sbjct: 349 GPPGQPGDKGERGA-AGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPG 407

Query: 146 FLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDP 205
            LP ++GP   G  G     G+  L      P PP   G + P RGK G   P G  G P
Sbjct: 408 -LPGQIGP--PGAPGIPGQKGEIGL------PGPPGHDGEKGP-RGKPGDMGPPGPQGPP 457


>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
          Length = 660

 Score = 38.5 bits (88), Expect = 0.007
 Identities = 55/186 (29%), Positives = 68/186 (36%), Gaps = 22/186 (11%)

Query: 39  GGGGEAGAHQRICGTRRGETHKSRS--RDGSTG-RGGPNARSPHPLGPAGAGVPRSLSPR 95
           G  GE G         +GET ++ S    G  G +G P A  P   GP G   P  L   
Sbjct: 476 GSPGEKG--------EKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGV 527

Query: 96  PVPGSEPSTGTRVGRQG-HGERSRRCRCCLGDAASPWAQSL---PYTQVQGGRGFLPEEV 151
           P P  E       G +G  GE+  R     G    P A  L   P      G   +P   
Sbjct: 528 PGPKGEAGLDGAKGEKGFQGEKGDR-----GPLGLPGASGLDGRPGPPGTPGPIGVPGPA 582

Query: 152 GPH-QRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDPEGNRR 210
           GP  +RG +G     G    +       PP   G+R   RGK+G   P+G  GD      
Sbjct: 583 GPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNR-GERGKKGSRGPKGDKGDQGAPGL 641

Query: 211 LRPPPL 216
             P PL
Sbjct: 642 DAPCPL 647



 Score = 37.4 bits (85), Expect = 0.014
 Identities = 52/180 (28%), Positives = 65/180 (36%), Gaps = 25/180 (13%)

Query: 39  GGGGEAGAHQR-----ICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAG-AGVPRSL 92
           G  GE GA        + G +  +     S  G  G  GP    P P GP G AGV   +
Sbjct: 293 GTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPG-LPGPPGPKGEAGVDGQV 351

Query: 93  SPRPVPGSEPSTGTRVGRQG-------HGERSRRCRCCLGDAASPWAQSLPYTQVQGGRG 145
            P   PG +   G   G QG        GE  +          +   Q +    + G  G
Sbjct: 352 GPPGQPGDKGERGA-AGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPG 410

Query: 146 FLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDP 205
            LP ++GP   G  G     G+  L      P PP   G + P RGK G   P G  G P
Sbjct: 411 -LPGQIGP--PGAPGIPGQKGEIGL------PGPPGHDGEKGP-RGKPGDMGPPGPQGPP 460


>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
          Length = 664

 Score = 38.5 bits (88), Expect = 0.007
 Identities = 55/186 (29%), Positives = 68/186 (36%), Gaps = 22/186 (11%)

Query: 39  GGGGEAGAHQRICGTRRGETHKSRS--RDGSTG-RGGPNARSPHPLGPAGAGVPRSLSPR 95
           G  GE G         +GET ++ S    G  G +G P A  P   GP G   P  L   
Sbjct: 480 GSPGEKG--------EKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGV 531

Query: 96  PVPGSEPSTGTRVGRQG-HGERSRRCRCCLGDAASPWAQSL---PYTQVQGGRGFLPEEV 151
           P P  E       G +G  GE+  R     G    P A  L   P      G   +P   
Sbjct: 532 PGPKGEAGLDGAKGEKGFQGEKGDR-----GPLGLPGASGLDGRPGPPGTPGPIGVPGPA 586

Query: 152 GPH-QRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDPEGNRR 210
           GP  +RG +G     G    +       PP   G+R   RGK+G   P+G  GD      
Sbjct: 587 GPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNR-GERGKKGSRGPKGDKGDQGAPGL 645

Query: 211 LRPPPL 216
             P PL
Sbjct: 646 DAPCPL 651



 Score = 37.4 bits (85), Expect = 0.014
 Identities = 52/180 (28%), Positives = 65/180 (36%), Gaps = 25/180 (13%)

Query: 39  GGGGEAGAHQR-----ICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAG-AGVPRSL 92
           G  GE GA        + G +  +     S  G  G  GP    P P GP G AGV   +
Sbjct: 297 GTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPG-LPGPPGPKGEAGVDGQV 355

Query: 93  SPRPVPGSEPSTGTRVGRQG-------HGERSRRCRCCLGDAASPWAQSLPYTQVQGGRG 145
            P   PG +   G   G QG        GE  +          +   Q +    + G  G
Sbjct: 356 GPPGQPGDKGERGA-AGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPG 414

Query: 146 FLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDP 205
            LP ++GP   G  G     G+  L      P PP   G + P RGK G   P G  G P
Sbjct: 415 -LPGQIGP--PGAPGIPGQKGEIGL------PGPPGHDGEKGP-RGKPGDMGPPGPQGPP 464


>gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]
          Length = 676

 Score = 38.5 bits (88), Expect = 0.007
 Identities = 55/186 (29%), Positives = 68/186 (36%), Gaps = 22/186 (11%)

Query: 39  GGGGEAGAHQRICGTRRGETHKSRS--RDGSTG-RGGPNARSPHPLGPAGAGVPRSLSPR 95
           G  GE G         +GET ++ S    G  G +G P A  P   GP G   P  L   
Sbjct: 492 GSPGEKG--------EKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGV 543

Query: 96  PVPGSEPSTGTRVGRQG-HGERSRRCRCCLGDAASPWAQSL---PYTQVQGGRGFLPEEV 151
           P P  E       G +G  GE+  R     G    P A  L   P      G   +P   
Sbjct: 544 PGPKGEAGLDGAKGEKGFQGEKGDR-----GPLGLPGASGLDGRPGPPGTPGPIGVPGPA 598

Query: 152 GPH-QRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDPEGNRR 210
           GP  +RG +G     G    +       PP   G+R   RGK+G   P+G  GD      
Sbjct: 599 GPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNR-GERGKKGSRGPKGDKGDQGAPGL 657

Query: 211 LRPPPL 216
             P PL
Sbjct: 658 DAPCPL 663



 Score = 37.4 bits (85), Expect = 0.014
 Identities = 52/180 (28%), Positives = 65/180 (36%), Gaps = 25/180 (13%)

Query: 39  GGGGEAGAHQR-----ICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAG-AGVPRSL 92
           G  GE GA        + G +  +     S  G  G  GP    P P GP G AGV   +
Sbjct: 309 GTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPG-LPGPPGPKGEAGVDGQV 367

Query: 93  SPRPVPGSEPSTGTRVGRQG-------HGERSRRCRCCLGDAASPWAQSLPYTQVQGGRG 145
            P   PG +   G   G QG        GE  +          +   Q +    + G  G
Sbjct: 368 GPPGQPGDKGERGA-AGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPG 426

Query: 146 FLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDP 205
            LP ++GP   G  G     G+  L      P PP   G + P RGK G   P G  G P
Sbjct: 427 -LPGQIGP--PGAPGIPGQKGEIGL------PGPPGHDGEKGP-RGKPGDMGPPGPQGPP 476


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.138    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,106,266
Number of Sequences: 37866
Number of extensions: 1009443
Number of successful extensions: 5893
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 485
Number of HSP's that attempted gapping in prelim test: 5067
Number of HSP's gapped (non-prelim): 1214
length of query: 277
length of database: 18,247,518
effective HSP length: 101
effective length of query: 176
effective length of database: 14,423,052
effective search space: 2538457152
effective search space used: 2538457152
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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