Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 169214385
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169214385 PREDICTED: hypothetical protein [Homo sapiens]
(277 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169213977 PREDICTED: hypothetical protein [Homo sapiens] 600 e-172
gi|169214385 PREDICTED: hypothetical protein [Homo sapiens] 600 e-172
gi|169213314 PREDICTED: hypothetical protein [Homo sapiens] 600 e-172
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 42 6e-04
gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo... 41 0.001
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 40 0.002
gi|169167813 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|169167899 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H... 40 0.002
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho... 40 0.002
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom... 40 0.002
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 40 0.002
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 40 0.002
gi|139394604 bromo adjacent homology domain containing 1 [Homo s... 40 0.002
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 40 0.003
gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s... 40 0.003
gi|13994253 Golgi reassembly stacking protein 1 [Homo sapiens] 40 0.003
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 39 0.004
gi|169169586 PREDICTED: hypothetical protein [Homo sapiens] 39 0.005
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 39 0.007
gi|169209217 PREDICTED: similar to hCG2042704 [Homo sapiens] 39 0.007
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens] 39 0.007
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 39 0.007
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 39 0.007
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 39 0.007
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens] 39 0.007
gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens] 39 0.007
>gi|169213977 PREDICTED: hypothetical protein [Homo sapiens]
Length = 277
Score = 600 bits (1547), Expect = e-172
Identities = 277/277 (100%), Positives = 277/277 (100%)
Query: 1 MGRRGFAELGRAQTTARGRYNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRGETHK 60
MGRRGFAELGRAQTTARGRYNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRGETHK
Sbjct: 1 MGRRGFAELGRAQTTARGRYNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRGETHK 60
Query: 61 SRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC 120
SRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC
Sbjct: 61 SRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC 120
Query: 121 RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP 180
RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP
Sbjct: 121 RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP 180
Query: 181 YAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARLPGFLP 240
YAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARLPGFLP
Sbjct: 181 YAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARLPGFLP 240
Query: 241 DCWGVSLAPHHVRWCAEVRVCAGEGPLLGLLDCKEQV 277
DCWGVSLAPHHVRWCAEVRVCAGEGPLLGLLDCKEQV
Sbjct: 241 DCWGVSLAPHHVRWCAEVRVCAGEGPLLGLLDCKEQV 277
>gi|169214385 PREDICTED: hypothetical protein [Homo sapiens]
Length = 277
Score = 600 bits (1547), Expect = e-172
Identities = 277/277 (100%), Positives = 277/277 (100%)
Query: 1 MGRRGFAELGRAQTTARGRYNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRGETHK 60
MGRRGFAELGRAQTTARGRYNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRGETHK
Sbjct: 1 MGRRGFAELGRAQTTARGRYNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRGETHK 60
Query: 61 SRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC 120
SRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC
Sbjct: 61 SRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC 120
Query: 121 RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP 180
RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP
Sbjct: 121 RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP 180
Query: 181 YAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARLPGFLP 240
YAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARLPGFLP
Sbjct: 181 YAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARLPGFLP 240
Query: 241 DCWGVSLAPHHVRWCAEVRVCAGEGPLLGLLDCKEQV 277
DCWGVSLAPHHVRWCAEVRVCAGEGPLLGLLDCKEQV
Sbjct: 241 DCWGVSLAPHHVRWCAEVRVCAGEGPLLGLLDCKEQV 277
>gi|169213314 PREDICTED: hypothetical protein [Homo sapiens]
Length = 277
Score = 600 bits (1547), Expect = e-172
Identities = 277/277 (100%), Positives = 277/277 (100%)
Query: 1 MGRRGFAELGRAQTTARGRYNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRGETHK 60
MGRRGFAELGRAQTTARGRYNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRGETHK
Sbjct: 1 MGRRGFAELGRAQTTARGRYNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRGETHK 60
Query: 61 SRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC 120
SRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC
Sbjct: 61 SRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC 120
Query: 121 RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP 180
RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP
Sbjct: 121 RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP 180
Query: 181 YAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARLPGFLP 240
YAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARLPGFLP
Sbjct: 181 YAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARLPGFLP 240
Query: 241 DCWGVSLAPHHVRWCAEVRVCAGEGPLLGLLDCKEQV 277
DCWGVSLAPHHVRWCAEVRVCAGEGPLLGLLDCKEQV
Sbjct: 241 DCWGVSLAPHHVRWCAEVRVCAGEGPLLGLLDCKEQV 277
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 42.0 bits (97), Expect = 6e-04
Identities = 56/191 (29%), Positives = 72/191 (37%), Gaps = 38/191 (19%)
Query: 36 QAWGGGGEAGAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSP- 94
Q GG GA +R RR + RSR ++ R P P P G+ RSLS
Sbjct: 373 QGRGGRAAGGAGRR----RRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSS--RSLSRA 426
Query: 95 ---------RPVPGSEPSTGTRVGRQGHGERSRRCRCCLGDAASPWAQSLPYTQVQGGRG 145
R PG P G+ G GHG+R++ A P A + P G RG
Sbjct: 427 RSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKE----RPPRARP-ASTSPSPGAHGRRG 481
Query: 146 FLPE------EVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPE 199
PE GPH R + + + SR P++ SR P+ K P
Sbjct: 482 G-PEGKSSSRSPGPHPRSWSSSRS----PSKSRSRSAEKRPHS-PSRSPSPKK-----PL 530
Query: 200 GGDGDPEGNRR 210
D D EG R
Sbjct: 531 SRDKDGEGRAR 541
Score = 36.2 bits (82), Expect = 0.032
Identities = 66/252 (26%), Positives = 82/252 (32%), Gaps = 81/252 (32%)
Query: 33 WGR-QAWGGGGE-AGAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAGAGVP- 89
WG Q GG G+ +GAH G R G H + P++ SP A A P
Sbjct: 308 WGSPQRNGGSGQRSGAH----GGRPGSAHSPPDK--------PSSPSPRVRDKAAAAAPT 355
Query: 90 ------RSLSPRPVPGSEPSTGTRVGRQGHGERSRRCRCCLGDAASPWAQSLPYTQVQGG 143
S SPR P S+ G G G R RR R +AS
Sbjct: 356 PPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSAS-------------- 401
Query: 144 RGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEG--- 200
P +RG RR P PP G SR +R + + G
Sbjct: 402 --------APRRRG--------------RRRPRPAPP-RGSSRSLSRARSSSDSGSGRGA 438
Query: 201 -GDGDPE----------GNRRLRPPPLSRRCFRS--------GGAAVFTTTARLPGFLPD 241
G G PE G R PP +R S G +++R PG P
Sbjct: 439 PGPG-PEPGSERGHGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPR 497
Query: 242 CWGVSLAPHHVR 253
W S +P R
Sbjct: 498 SWSSSRSPSKSR 509
Score = 28.1 bits (61), Expect = 8.8
Identities = 40/154 (25%), Positives = 50/154 (32%), Gaps = 20/154 (12%)
Query: 52 GTRRGETHKSRSRDGSTGRGGPNARSPHPLGP--------AGAGVPRSLSPRPVPGSEPS 103
G+RR H+SRS + PH P +G+ SLS PS
Sbjct: 217 GSRRKRRHRSRSSKCKRKEKNKEKKRPHTESPGRRSHRHSSGSSHSPSLSSHYSDSRSPS 276
Query: 104 ----TGTRVGRQGHGERSRRCRCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQE 159
GR+ +RS R S W Q GG G + G H G+
Sbjct: 277 RLSPKHRDEGRKTGSQRSSGSRSPSPSGGSGWGS----PQRNGGSG---QRSGAH-GGRP 328
Query: 160 GAGTGWGDATLSRRNCTPTPPYAGGSREPARGKE 193
G+ D S A PARGKE
Sbjct: 329 GSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKE 362
>gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo
sapiens]
Length = 3312
Score = 41.2 bits (95), Expect = 0.001
Identities = 47/183 (25%), Positives = 60/183 (32%), Gaps = 32/183 (17%)
Query: 45 GAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVP------ 98
G+ +R G G R S GR GP R G +GVP S + P+P
Sbjct: 119 GSRERETGQGPGSVLYWRPEVSSCGRTGPLQRGSLSPGALSSGVPGSGNSSPLPSDFLIR 178
Query: 99 --GSEPSTGTRVGRQGHGERSRRCRCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQR 156
G +P + R G +R RCC WA G+G
Sbjct: 179 HHGPKPVSSQRNAGTGSRKRVGTARCC----GELWATG------SKGQG----------- 217
Query: 157 GQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPL 216
E A T + T RRNC P +G + A + P G E P P
Sbjct: 218 --ERATTSGAERTAPRRNCLPGASGSGPELDSA-PRTARTAPASGSAPRESRTAPEPAPK 274
Query: 217 SRR 219
R
Sbjct: 275 RMR 277
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 40.8 bits (94), Expect = 0.001
Identities = 43/150 (28%), Positives = 52/150 (34%), Gaps = 19/150 (12%)
Query: 40 GGGEAGAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAG---AGVPRSLSPRP 96
GG GA +R R GE + R R G P P P GPA AG R+
Sbjct: 240 GGEVVGARRR----RGGEERRVRGRRQGCALGSP----PIPAGPAAPGRAGERRAARQWR 291
Query: 97 VPGSEPSTGTRVGRQGHG------ERSRRCRCCLGDAASPWAQSLPYTQV--QGGRGFLP 148
G P R G QG G R+R CL + + W PY + G R P
Sbjct: 292 KRGGGPGVSPREGAQGEGVRGGVTPRARGSSTCLRPSPATWQGGAPYRAIFAAGPRLSAP 351
Query: 149 EEVGPHQRGQEGAGTGWGDATLSRRNCTPT 178
G A + SRR P+
Sbjct: 352 SAEAEEVPGGHTASNPTYEPLSSRRTKAPS 381
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 40.8 bits (94), Expect = 0.001
Identities = 43/150 (28%), Positives = 52/150 (34%), Gaps = 19/150 (12%)
Query: 40 GGGEAGAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAG---AGVPRSLSPRP 96
GG GA +R R GE + R R G P P P GPA AG R+
Sbjct: 334 GGEVVGARRR----RGGEERRVRGRRQGCALGSP----PIPAGPAAPGRAGERRAARQWR 385
Query: 97 VPGSEPSTGTRVGRQGHG------ERSRRCRCCLGDAASPWAQSLPYTQV--QGGRGFLP 148
G P R G QG G R+R CL + + W PY + G R P
Sbjct: 386 KRGGGPGVSPREGAQGEGVRGGVTPRARGSSTCLRPSPATWQGGAPYRAIFAAGPRLSAP 445
Query: 149 EEVGPHQRGQEGAGTGWGDATLSRRNCTPT 178
G A + SRR P+
Sbjct: 446 SAEAEEVPGGHTASNPTYEPLSSRRTKAPS 475
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 40.8 bits (94), Expect = 0.001
Identities = 43/150 (28%), Positives = 52/150 (34%), Gaps = 19/150 (12%)
Query: 40 GGGEAGAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAG---AGVPRSLSPRP 96
GG GA +R R GE + R R G P P P GPA AG R+
Sbjct: 334 GGEVVGARRR----RGGEERRVRGRRQGCALGSP----PIPAGPAAPGRAGERRAARQWR 385
Query: 97 VPGSEPSTGTRVGRQGHG------ERSRRCRCCLGDAASPWAQSLPYTQV--QGGRGFLP 148
G P R G QG G R+R CL + + W PY + G R P
Sbjct: 386 KRGGGPGVSPREGAQGEGVRGGVTPRARGSSTCLRPSPATWQGGAPYRAIFAAGPRLSAP 445
Query: 149 EEVGPHQRGQEGAGTGWGDATLSRRNCTPT 178
G A + SRR P+
Sbjct: 446 SAEAEEVPGGHTASNPTYEPLSSRRTKAPS 475
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 40.4 bits (93), Expect = 0.002
Identities = 49/184 (26%), Positives = 64/184 (34%), Gaps = 30/184 (16%)
Query: 73 PNARSPHPLGPAGAGVPRSLSPRPVPGSEP-------------STGTRVGRQGHGERSRR 119
P+ P P G AG G+P S SP P GS T T G + G +
Sbjct: 148 PSWGGPEPEGRAGGGIPGSSSPHPGTGSRRLKVAPPPPAPKPCKTVTTSGAKAGGGKGAG 207
Query: 120 CRCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTP 179
R W +S +V+G + A G G +T S
Sbjct: 208 SRL-------SWPESEGKPRVKGSKSSAGTGASV-SAAATAAAAGGGGSTASTSGGVGAG 259
Query: 180 PYAGGSREPARGKEGVWTPEGGD---GDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARLP 236
A G P +GK T + D G P G+ PPPL+ S AV +A+ P
Sbjct: 260 AGARGKLSPRKGKSK--TLDNSDLHPGPPAGS----PPPLTLPPTPSPATAVTAASAQPP 313
Query: 237 GFLP 240
G P
Sbjct: 314 GPAP 317
>gi|169167813 PREDICTED: hypothetical protein [Homo sapiens]
Length = 260
Score = 40.4 bits (93), Expect = 0.002
Identities = 46/152 (30%), Positives = 56/152 (36%), Gaps = 31/152 (20%)
Query: 73 PNARSPHPLGP-------------AGAGVPRSLSPR-PVPGSEPSTGTRVGRQGHGERSR 118
P++RSP P+ P AGA + PR P PGS P G R+ H S
Sbjct: 68 PDSRSPTPVPPSFASDQRARVRVCAGANGAGASGPRGPSPGSPPPPGLSSSRRRHRHCSS 127
Query: 119 RCRCC------LGDAASPW---AQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDAT 169
RC C L PW A L Q GG E G + G+E G G
Sbjct: 128 RCCRCRRRRRSLALLLFPWLRPAWQLAGCQAWGG------ERGRGETGREDGRAGVGKG- 180
Query: 170 LSRRNCTPTPPYAGGSREPARGKEGVWTPEGG 201
R+ TP A +P EG +GG
Sbjct: 181 -GHRSPGVTPRLARSPPDPGCRSEGEADVQGG 211
>gi|169167899 PREDICTED: hypothetical protein [Homo sapiens]
Length = 260
Score = 40.4 bits (93), Expect = 0.002
Identities = 46/152 (30%), Positives = 56/152 (36%), Gaps = 31/152 (20%)
Query: 73 PNARSPHPLGP-------------AGAGVPRSLSPR-PVPGSEPSTGTRVGRQGHGERSR 118
P++RSP P+ P AGA + PR P PGS P G R+ H S
Sbjct: 68 PDSRSPTPVPPSFASDQRARVRVCAGANGAGASGPRGPSPGSPPPPGLSSSRRRHRHCSS 127
Query: 119 RCRCC------LGDAASPW---AQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDAT 169
RC C L PW A L Q GG E G + G+E G G
Sbjct: 128 RCCRCRRRRRSLALLLFPWLRPAWQLAGCQAWGG------ERGRGETGREDGRAGVGKG- 180
Query: 170 LSRRNCTPTPPYAGGSREPARGKEGVWTPEGG 201
R+ TP A +P EG +GG
Sbjct: 181 -GHRSPGVTPRLARSPPDPGCRSEGEADVQGG 211
>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
sapiens]
Length = 828
Score = 40.4 bits (93), Expect = 0.002
Identities = 55/168 (32%), Positives = 64/168 (38%), Gaps = 24/168 (14%)
Query: 54 RRGE--THKSRSRDGSTG-RGGPNARSPHPL----GPAGAGVPRSL-SPRPVPGSEPSTG 105
RRG+ T S DG G +G P P L G GA R L PR G+ G
Sbjct: 425 RRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPG 484
Query: 106 TRVGRQGHGERSRRCRCCLGDAASPWAQS---LPYTQVQGGRGFLPEEVGPHQRGQEGAG 162
+ R G+ R GD+ P + P G RG E+ P RG EG
Sbjct: 485 KQGSRGDPGDAGPR-----GDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEG-- 537
Query: 163 TGWGDATLS----RRNCTPTPPYAGGSREPA-RGKEGVWTPEGGDGDP 205
G GD L R+ P G EP RG GV PEG G P
Sbjct: 538 -GRGDFGLKGEPGRKGEKGEPADPGPPGEPGPRGPRGVPGPEGEPGPP 584
Score = 32.3 bits (72), Expect = 0.47
Identities = 47/179 (26%), Positives = 60/179 (33%), Gaps = 36/179 (20%)
Query: 39 GGGGEAGAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVP 98
G GE GA R + + + G GR GP P G P + P P
Sbjct: 307 GEKGEFGADGRKGAPGLAGKNGTDGQKGKLGRIGP---------PGCKGDPGNRGPDGYP 357
Query: 99 GSEPSTGTRVGRQGHGERSRRCRCCLGDAASPWAQSLP-YTQVQGGRGFLPEEVGPHQRG 157
G S G R + G G+ R P + P +G +G+ P G
Sbjct: 358 GEAGSPGERGDQGGKGDPGR-----------PGRRGPPGEIGAKGSKGYQGNSGAPGSPG 406
Query: 158 QEGAGTGWGDATLSRRNCTPTPPYAGGSRE---PARGKEGVWTPEG--GDGDPEGNRRL 211
+GA G G P P R +G G P+G GD PEG R L
Sbjct: 407 VKGAKGGPG----------PRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGL 455
>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
sapiens]
Length = 918
Score = 40.4 bits (93), Expect = 0.002
Identities = 55/168 (32%), Positives = 64/168 (38%), Gaps = 24/168 (14%)
Query: 54 RRGE--THKSRSRDGSTG-RGGPNARSPHPL----GPAGAGVPRSL-SPRPVPGSEPSTG 105
RRG+ T S DG G +G P P L G GA R L PR G+ G
Sbjct: 425 RRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPG 484
Query: 106 TRVGRQGHGERSRRCRCCLGDAASPWAQS---LPYTQVQGGRGFLPEEVGPHQRGQEGAG 162
+ R G+ R GD+ P + P G RG E+ P RG EG
Sbjct: 485 KQGSRGDPGDAGPR-----GDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEG-- 537
Query: 163 TGWGDATLS----RRNCTPTPPYAGGSREPA-RGKEGVWTPEGGDGDP 205
G GD L R+ P G EP RG GV PEG G P
Sbjct: 538 -GRGDFGLKGEPGRKGEKGEPADPGPPGEPGPRGPRGVPGPEGEPGPP 584
Score = 32.3 bits (72), Expect = 0.47
Identities = 47/179 (26%), Positives = 60/179 (33%), Gaps = 36/179 (20%)
Query: 39 GGGGEAGAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVP 98
G GE GA R + + + G GR GP P G P + P P
Sbjct: 307 GEKGEFGADGRKGAPGLAGKNGTDGQKGKLGRIGP---------PGCKGDPGNRGPDGYP 357
Query: 99 GSEPSTGTRVGRQGHGERSRRCRCCLGDAASPWAQSLP-YTQVQGGRGFLPEEVGPHQRG 157
G S G R + G G+ R P + P +G +G+ P G
Sbjct: 358 GEAGSPGERGDQGGKGDPGR-----------PGRRGPPGEIGAKGSKGYQGNSGAPGSPG 406
Query: 158 QEGAGTGWGDATLSRRNCTPTPPYAGGSRE---PARGKEGVWTPEG--GDGDPEGNRRL 211
+GA G G P P R +G G P+G GD PEG R L
Sbjct: 407 VKGAKGGPG----------PRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGL 455
>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
sapiens]
Length = 1019
Score = 40.4 bits (93), Expect = 0.002
Identities = 55/168 (32%), Positives = 64/168 (38%), Gaps = 24/168 (14%)
Query: 54 RRGE--THKSRSRDGSTG-RGGPNARSPHPL----GPAGAGVPRSL-SPRPVPGSEPSTG 105
RRG+ T S DG G +G P P L G GA R L PR G+ G
Sbjct: 425 RRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPG 484
Query: 106 TRVGRQGHGERSRRCRCCLGDAASPWAQS---LPYTQVQGGRGFLPEEVGPHQRGQEGAG 162
+ R G+ R GD+ P + P G RG E+ P RG EG
Sbjct: 485 KQGSRGDPGDAGPR-----GDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEG-- 537
Query: 163 TGWGDATLS----RRNCTPTPPYAGGSREPA-RGKEGVWTPEGGDGDP 205
G GD L R+ P G EP RG GV PEG G P
Sbjct: 538 -GRGDFGLKGEPGRKGEKGEPADPGPPGEPGPRGPRGVPGPEGEPGPP 584
Score = 32.3 bits (72), Expect = 0.47
Identities = 47/179 (26%), Positives = 60/179 (33%), Gaps = 36/179 (20%)
Query: 39 GGGGEAGAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVP 98
G GE GA R + + + G GR GP P G P + P P
Sbjct: 307 GEKGEFGADGRKGAPGLAGKNGTDGQKGKLGRIGP---------PGCKGDPGNRGPDGYP 357
Query: 99 GSEPSTGTRVGRQGHGERSRRCRCCLGDAASPWAQSLP-YTQVQGGRGFLPEEVGPHQRG 157
G S G R + G G+ R P + P +G +G+ P G
Sbjct: 358 GEAGSPGERGDQGGKGDPGR-----------PGRRGPPGEIGAKGSKGYQGNSGAPGSPG 406
Query: 158 QEGAGTGWGDATLSRRNCTPTPPYAGGSRE---PARGKEGVWTPEG--GDGDPEGNRRL 211
+GA G G P P R +G G P+G GD PEG R L
Sbjct: 407 VKGAKGGPG----------PRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGL 455
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 40.4 bits (93), Expect = 0.002
Identities = 40/138 (28%), Positives = 54/138 (39%), Gaps = 19/138 (13%)
Query: 36 QAWGGGGEAGAHQRICGTRRGETHKSRSRDGSTGRGG-PNARSPHPLGPAGAGVPRSLSP 94
Q WG A A G + +H + GS+G GG P AR+P P P + P
Sbjct: 335 QCWGAAAAAAAAAAASGGAQQRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQ--MGKMRP 392
Query: 95 RPVPGSEP---STGTRVG-RQGHG--------ERSRRCRCCLGDAASPWAQSLPYTQVQG 142
+P G+ P G G +QGHG + +R + A L YTQ
Sbjct: 393 QPYGGTNPYSQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIP 452
Query: 143 GRGFLPEEVGPHQRGQEG 160
G + GP GQ+G
Sbjct: 453 PYG----QQGPSGYGQQG 466
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 40.4 bits (93), Expect = 0.002
Identities = 40/138 (28%), Positives = 54/138 (39%), Gaps = 19/138 (13%)
Query: 36 QAWGGGGEAGAHQRICGTRRGETHKSRSRDGSTGRGG-PNARSPHPLGPAGAGVPRSLSP 94
Q WG A A G + +H + GS+G GG P AR+P P P + P
Sbjct: 335 QCWGAAAAAAAAAAASGGAQQRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQ--MGKMRP 392
Query: 95 RPVPGSEP---STGTRVG-RQGHG--------ERSRRCRCCLGDAASPWAQSLPYTQVQG 142
+P G+ P G G +QGHG + +R + A L YTQ
Sbjct: 393 QPYGGTNPYSQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIP 452
Query: 143 GRGFLPEEVGPHQRGQEG 160
G + GP GQ+G
Sbjct: 453 PYG----QQGPSGYGQQG 466
>gi|139394604 bromo adjacent homology domain containing 1 [Homo
sapiens]
Length = 780
Score = 40.0 bits (92), Expect = 0.002
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 50 ICGTRR---GETHKSRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEP 102
+ GTRR G+ H+SR RD +TG + + P LG G G R LSP P P P
Sbjct: 140 LAGTRRSRAGDPHRSRDRDRATGGWSSSKKRPR-LGDLGGG-SRDLSPEPAPDEGP 193
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 39.7 bits (91), Expect = 0.003
Identities = 56/185 (30%), Positives = 70/185 (37%), Gaps = 26/185 (14%)
Query: 66 GSTGRGGP-----NARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC 120
GSTG G N+ P GP G PR P+ +PGS G VG G +
Sbjct: 589 GSTGAPGKPGQMGNSGKPGQQGPPGEVGPR--GPQGLPGSRGELGP-VGSPGLPGK---- 641
Query: 121 RCCLGDAASPWAQSLP----YTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDA-TLSRRNC 175
LG SP LP ++G RG + E P +G++GA G+A
Sbjct: 642 ---LGSLGSPGLPGLPGPPGLPGMKGDRGVVGE---PGPKGEQGASGEEGEAGERGELGD 695
Query: 176 TPTPPYAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARL 235
P G + P G+ G+ PEG G P G R PP R GA
Sbjct: 696 IGLPGPKGSAGNP--GEPGLRGPEGSRGLP-GVEGPRGPPGPRGVQGEQGATGLPGVQGP 752
Query: 236 PGFLP 240
PG P
Sbjct: 753 PGRAP 757
Score = 28.5 bits (62), Expect = 6.7
Identities = 42/135 (31%), Positives = 53/135 (39%), Gaps = 20/135 (14%)
Query: 62 RSRDGST---GRGGPNARSPHPLGPAGA-GVPRSLSPRPVPGSE---PSTGTRVGRQGHG 114
R G+T GR GP P P GP G G P + R +PG + + G R + G
Sbjct: 783 RPDSGATGLPGRPGP----PGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLG 838
Query: 115 ERSRRCRCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRN 174
E+ R G P A LP G G P G + G++G G A +
Sbjct: 839 EKGERGPPGRGPNGLPGAIGLP-----GDPG--PASYG--RNGRDGERGPPGVAGIPGVP 889
Query: 175 CTPTPPYAGGSREPA 189
P PP G EPA
Sbjct: 890 GPPGPPGLPGFCEPA 904
>gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo
sapiens]
Length = 678
Score = 39.7 bits (91), Expect = 0.003
Identities = 56/185 (30%), Positives = 70/185 (37%), Gaps = 26/185 (14%)
Query: 66 GSTGRGGP-----NARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC 120
GSTG G N+ P GP G PR P+ +PGS G VG G +
Sbjct: 346 GSTGAPGKPGQMGNSGKPGQQGPPGEVGPR--GPQGLPGSRGELGP-VGSPGLPGK---- 398
Query: 121 RCCLGDAASPWAQSLP----YTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDA-TLSRRNC 175
LG SP LP ++G RG + E P +G++GA G+A
Sbjct: 399 ---LGSLGSPGLPGLPGPPGLPGMKGDRGVVGE---PGPKGEQGASGEEGEAGERGELGD 452
Query: 176 TPTPPYAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARL 235
P G + P G+ G+ PEG G P G R PP R GA
Sbjct: 453 IGLPGPKGSAGNP--GEPGLRGPEGSRGLP-GVEGPRGPPGPRGVQGEQGATGLPGVQGP 509
Query: 236 PGFLP 240
PG P
Sbjct: 510 PGRAP 514
Score = 28.5 bits (62), Expect = 6.7
Identities = 42/135 (31%), Positives = 53/135 (39%), Gaps = 20/135 (14%)
Query: 62 RSRDGST---GRGGPNARSPHPLGPAGA-GVPRSLSPRPVPGSE---PSTGTRVGRQGHG 114
R G+T GR GP P P GP G G P + R +PG + + G R + G
Sbjct: 540 RPDSGATGLPGRPGP----PGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLG 595
Query: 115 ERSRRCRCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRN 174
E+ R G P A LP G G P G + G++G G A +
Sbjct: 596 EKGERGPPGRGPNGLPGAIGLP-----GDPG--PASYG--RNGRDGERGPPGVAGIPGVP 646
Query: 175 CTPTPPYAGGSREPA 189
P PP G EPA
Sbjct: 647 GPPGPPGLPGFCEPA 661
>gi|13994253 Golgi reassembly stacking protein 1 [Homo sapiens]
Length = 440
Score = 39.7 bits (91), Expect = 0.003
Identities = 30/90 (33%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 20 YNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPH 79
YN + R AWGG G G CG G H+ ++ S + P P
Sbjct: 166 YNSKSDSCREVTVTPNAAWGGEGSLG-----CGIGYGYLHRIPTQPPSYHKKPPGTPPPS 220
Query: 80 PLGPAGAGVPRSLSPRPVPGSEPS--TGTR 107
L P GA P +L P P P PS TG+R
Sbjct: 221 AL-PLGAPPPDALPPGPTPEDSPSLETGSR 249
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 39.3 bits (90), Expect = 0.004
Identities = 47/162 (29%), Positives = 60/162 (37%), Gaps = 14/162 (8%)
Query: 61 SRSRDGSTGRGGPNARSPHPLGPAG-AGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRR 119
+R DG+TG GP P P GPAG G P ++ + G + G+ + GE
Sbjct: 321 ARGNDGATGAAGP----PGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPP 376
Query: 120 CRC-CLGDAASPWAQSLPYTQ-VQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTP 177
G A +P A P + G G P RG G G + P
Sbjct: 377 GPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEP 436
Query: 178 TPPYA----GGSREPARGKEGVWTPEGGDGDPEGNRRLRPPP 215
P + G EP G GV P G G+ EG R R P
Sbjct: 437 GAPGSKGDTGAKGEP--GPVGVQGPPGPAGE-EGKRGARGEP 475
Score = 38.9 bits (89), Expect = 0.005
Identities = 50/174 (28%), Positives = 55/174 (31%), Gaps = 38/174 (21%)
Query: 65 DGSTGRGGPNARS--PHPLGPAG----------------AGVPRSLSPRPVPGSEPSTGT 106
DG TG GP + P P GP G AG P R VPG + G
Sbjct: 550 DGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGP 609
Query: 107 -----RVGRQG-------HGERSRRCRCCLGDAASPWAQSLPYTQVQGGRGFLPEEVG-P 153
G QG GER + G A SP Q LP G P E G P
Sbjct: 610 AGKDGEAGAQGPPGPAGPAGERGEQ-----GPAGSPGFQGLPGPAGPPGEAGKPGEQGVP 664
Query: 154 HQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSR--EPARGKEGVWTPEGGDGDP 205
G G G+ PP G R A G +G G G P
Sbjct: 665 GDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAP 718
Score = 37.4 bits (85), Expect = 0.014
Identities = 42/155 (27%), Positives = 54/155 (34%), Gaps = 34/155 (21%)
Query: 66 GSTGRGGPNARS-----PHPLGPAG-AGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRR 119
G G+ GP+ S P P+GP G AG P PG+E S G G+R
Sbjct: 980 GEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGE- 1038
Query: 120 CRCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTP 179
G A P A P P VGP + + TG P
Sbjct: 1039 ----TGPAGPPGAPGAPGA---------PGPVGPAGKSGDRGETG------------PAG 1073
Query: 180 PYAGGSREPARGKEGVWTPEGGDGD--PEGNRRLR 212
P ARG G P G G+ +G+R ++
Sbjct: 1074 PAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIK 1108
Score = 37.0 bits (84), Expect = 0.019
Identities = 48/171 (28%), Positives = 56/171 (32%), Gaps = 39/171 (22%)
Query: 65 DGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQG-HGERSRRCRCC 123
DG+ G GP P P G P + PR +PG GR G G R
Sbjct: 274 DGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGER-------GRPGAPGPAGARGNDG 326
Query: 124 LGDAASPWAQSLP-----YTQVQGGRGFLPEEVGPH-QRGQEG----------------- 160
AA P + P + G +G E GP RG EG
Sbjct: 327 ATGAAGPPGPTGPAGPPGFPGAVGAKG----EAGPQGPRGSEGPQGVRGEPGPPGPAGAA 382
Query: 161 --AGTGWGDATLSRRNCTPTPPYAGGSREP-ARGKEGVWTPEGGDGDPEGN 208
AG D + P AG P ARG G P GG P+GN
Sbjct: 383 GPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGP-GGPPGPKGN 432
Score = 33.1 bits (74), Expect = 0.27
Identities = 40/151 (26%), Positives = 50/151 (33%), Gaps = 11/151 (7%)
Query: 55 RGETHKSRSRDGSTGRGGPNARS-PHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGH 113
+GE+ S + RG P R P P GPAG P +P EP G G
Sbjct: 781 KGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGP 840
Query: 114 GERSRRCRCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRR 173
+ G A P + G +G P G GA G S
Sbjct: 841 PGPA-------GPAGPP--GPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGN 891
Query: 174 NCTPTPPYAGGSREPARGKEGVWTPEGGDGD 204
P PP G +E +G G P G G+
Sbjct: 892 AGPPGPPGPAG-KEGGKGPRGETGPAGRPGE 921
Score = 31.6 bits (70), Expect = 0.80
Identities = 46/165 (27%), Positives = 54/165 (32%), Gaps = 29/165 (17%)
Query: 62 RSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGT--RVGRQGH-GERSR 118
R G G GP P P G + PR PG G G+ G GER
Sbjct: 187 RGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGER-- 244
Query: 119 RCRCCLGDAASPWAQSLPYTQ----VQGGRGF--LPEEVG----------PHQRGQEGAG 162
G A+ LP T ++G RGF L G P G+ GA
Sbjct: 245 ------GPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAP 298
Query: 163 TGWGDATLSRRNCTPTPPYAGGSR--EPARGKEGVWTPEGGDGDP 205
G L P P G+R + A G G P G G P
Sbjct: 299 GQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPP 343
Score = 31.6 bits (70), Expect = 0.80
Identities = 40/154 (25%), Positives = 49/154 (31%), Gaps = 19/154 (12%)
Query: 62 RSRDGSTGRGGPNARSPHPLGPAG-AGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC 120
+ DGS G+ G + P+GP G AG P G TG R GE
Sbjct: 751 KGADGSPGKDGVRGLTG-PIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPG 809
Query: 121 RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP 180
G A P A P + + G + GP G G P P
Sbjct: 810 PA--GFAGPPGADGQPGAKGEPGDAGAKGDAGPP--GPAGPAG-------------PPGP 852
Query: 181 YAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPP 214
A+G G P G G P R+ PP
Sbjct: 853 IGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPP 886
Score = 28.1 bits (61), Expect = 8.8
Identities = 42/151 (27%), Positives = 49/151 (32%), Gaps = 29/151 (19%)
Query: 61 SRSRDGSTGRGGPNARSPHPLGPAGA----GVPRSLSPRPVPGSEPSTGTRVGRQGHGER 116
S RDGS G G + P GP GA G P + P G TG G
Sbjct: 1023 SPGRDGSPGAKGDRGET-GPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPV 1081
Query: 117 SRRCRCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCT 176
R A P QG RG + G++G G S
Sbjct: 1082 GAR------GPAGP----------QGPRG------DKGETGEQGDRGIKGHRGFSGLQGP 1119
Query: 177 PTPPYAGGSREP--ARGKEGVWTPEGGDGDP 205
P PP + G + P A G G P G G P
Sbjct: 1120 PGPPGSPGEQGPSGASGPAGPRGPPGSAGAP 1150
>gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]
Length = 251
Score = 38.9 bits (89), Expect = 0.005
Identities = 65/240 (27%), Positives = 83/240 (34%), Gaps = 60/240 (25%)
Query: 29 ITQRWGRQAWGGGGEAGAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAGAGV 88
I +R +Q GGGG G H+ H SR+ P R+P PA +
Sbjct: 2 IRKRPHQQGGGGGGGQGRHR----------HSSRA---------PGTRTPAT--PARSPR 40
Query: 89 PRSLSPRPVPGSEPSTGTRVGRQGHGERSRRCRCCLGDAASPWAQSLPYTQVQGGRGFLP 148
P +PRP PG R++ G SP A + P G P
Sbjct: 41 PPLCAPRPAPG----------------RAQSPVPAAGAVPSPPAAAHPARPALRGETPAP 84
Query: 149 EEVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDPEGN 208
G+ G T G+ S R P GG RG+ G P P +
Sbjct: 85 --------GRRGRATTRGEVQPSVRPPLSHRPLRGGGM--GRGRPGKGPP------PNPS 128
Query: 209 RRLRP-PPLSRRCFRS----GGAAVFTTTARL--PGFLPDCWGVSLAPHHVRWCAEVRVC 261
RRL P PP RR + S G AA R P F WG + H+R + C
Sbjct: 129 RRLPPAPPGGRRTWLSALATGPAAGGAGRRRRSPPVFRAADWGFGRSEQHLRGLTLIISC 188
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 38.5 bits (88), Expect = 0.007
Identities = 55/199 (27%), Positives = 75/199 (37%), Gaps = 60/199 (30%)
Query: 38 WGGGGEAGAHQRICGTRRGETHK--SRSRDGSTGRGGPNARS--PHPLGPAGAGV----- 88
+GGGG+AG+ + + + ++R G GP + P P+GP G+G
Sbjct: 526 FGGGGDAGSKGPMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKGEP 585
Query: 89 -------PRSLSPRPVPGSEPSTGTRVGRQGHGERSRRCRCCLGDAASPWAQSLP-YTQV 140
PR + P P +P GR+G A S A+ +P T
Sbjct: 586 GDVGPQGPRGVQGPPGPAGKP------GRRGR-------------AGSDGARGMPGQTGP 626
Query: 141 QGGRGF-----LPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGV 195
+G RGF LP E G RG G + P PP G RG +G
Sbjct: 627 KGDRGFDGLAGLPGEKG--HRGDPGP------------SGPPGPPGDDGE----RGDDGE 668
Query: 196 WTPEGGDGDPEGNRRLRPP 214
P G G+P G R L P
Sbjct: 669 VGPRGLPGEP-GPRGLLGP 686
Score = 36.6 bits (83), Expect = 0.025
Identities = 50/156 (32%), Positives = 59/156 (37%), Gaps = 35/156 (22%)
Query: 65 DGSTGRGGPNARSPHPLGPAG----AGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC 120
+G GRGGPN P PLGP G GVP +PG GRQG
Sbjct: 843 EGPKGRGGPNG-DPGPLGPPGEKGKLGVP------GLPGYP-------GRQGP------- 881
Query: 121 RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP 180
+ +G P A +GGRG P + GP RGQ G G+ P P
Sbjct: 882 KGSIGFPGFPGANG-----EKGGRG-TPGKPGP--RGQRGPTGPRGERGPRGITGKPGPK 933
Query: 181 YAGGSREPA--RGKEGVWTPEGGDGDPEGNRRLRPP 214
G PA G+ G P+G G P PP
Sbjct: 934 GNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPP 969
Score = 35.4 bits (80), Expect = 0.055
Identities = 44/151 (29%), Positives = 61/151 (40%), Gaps = 10/151 (6%)
Query: 62 RSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGH-GERSRRC 120
+ +G G GP A SP GPAGA P + RP P P G G G +
Sbjct: 1074 KGNEGPPGPPGP-AGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAG 1132
Query: 121 RCCL-GDAASPW-AQSLPYTQVQGGRGFLPEEVGPHQRGQEG-AGTGWGDATLSRRNCTP 177
R L G P A + G +G + E P Q+G +G G +
Sbjct: 1133 RDGLQGPVGLPGPAGPVGPPGEDGDKGEIGE---PGQKGSKGDKGEQGPPGPTGPQGPIG 1189
Query: 178 TPPYAGGSREPA-RGKEGVWTPEGGDGDPEG 207
P +G EP RG++G++ +G +G P G
Sbjct: 1190 QPGPSGADGEPGPRGQQGLFGQKGDEG-PRG 1219
Score = 32.7 bits (73), Expect = 0.36
Identities = 39/143 (27%), Positives = 50/143 (34%), Gaps = 21/143 (14%)
Query: 65 DGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRCRCCL 124
DG G GP P P G P + P +PG + +G + G +GH +
Sbjct: 1437 DGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPK-GEKGHPG-------LI 1488
Query: 125 GDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGG 184
G P Q +G RG P +G G G S P PP G
Sbjct: 1489 GLIGPPGEQG-----EKGDRGL------PGPQGSSGPKGEQGITGPSGPIGPPGPPGLPG 1537
Query: 185 SREP--ARGKEGVWTPEGGDGDP 205
P A+G G P+G G P
Sbjct: 1538 PPGPKGAKGSSGPTGPKGEAGHP 1560
Score = 30.0 bits (66), Expect = 2.3
Identities = 39/147 (26%), Positives = 51/147 (34%), Gaps = 14/147 (9%)
Query: 69 GRGGPNARSPH----PLGPAGAGVPRSLSPRPVP----GSEPSTGTRVGRQGHGERS-RR 119
GRG P P P GP G PR ++ +P P G + G R +G +
Sbjct: 899 GRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTG 958
Query: 120 CRCCLGDAASPWAQSLP-YTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPT 178
G P LP + +G GF + P G G G+ P
Sbjct: 959 FPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPG 1018
Query: 179 PPYAGGSREPARGKEGVWTPEGGDGDP 205
PP G +G G+ EG GDP
Sbjct: 1019 PPGPPGE----QGLPGLAGKEGTKGDP 1041
>gi|169209217 PREDICTED: similar to hCG2042704 [Homo sapiens]
Length = 511
Score = 38.5 bits (88), Expect = 0.007
Identities = 61/211 (28%), Positives = 78/211 (36%), Gaps = 47/211 (22%)
Query: 19 RYNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRG--ETHKSRSRDG-STGRGGPNA 75
R+N R T R++Q A GGG A + + RRG H SR S R P+A
Sbjct: 6 RHNHGRRTGRLSQ----SAREGGGWARPARAV---RRGGHPAHFCWSRPPVSRERDDPSA 58
Query: 76 RSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRCRCCLGDAASPWAQSL 135
P P +P S SP P + + GRQ R CR SL
Sbjct: 59 PRPVP------ALPSSPSPPPPVRRPSAAREQQGRQVPAGSLRDCRLA----------SL 102
Query: 136 PYTQVQGGRGFLPEEVGPHQR-GQEGAGTGWGDATLSRRNCTPTPPYA-GGSREPARGKE 193
P + GRG PH+ G + A G+ R+ P GG R P
Sbjct: 103 PLQRPFRGRG-------PHRSLGCDAAPAALGNGRPGARSDRPCGAGGDGGGRLP----- 150
Query: 194 GVWTPEGGDGDPEGNRRLRPPPLSRRCFRSG 224
GD D + P PL+ RC+R G
Sbjct: 151 -------GDDDDNDEEQPPPLPLTGRCWRDG 174
>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
Length = 717
Score = 38.5 bits (88), Expect = 0.007
Identities = 55/186 (29%), Positives = 68/186 (36%), Gaps = 22/186 (11%)
Query: 39 GGGGEAGAHQRICGTRRGETHKSRS--RDGSTG-RGGPNARSPHPLGPAGAGVPRSLSPR 95
G GE G +GET ++ S G G +G P A P GP G P L
Sbjct: 533 GSPGEKG--------EKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGV 584
Query: 96 PVPGSEPSTGTRVGRQG-HGERSRRCRCCLGDAASPWAQSL---PYTQVQGGRGFLPEEV 151
P P E G +G GE+ R G P A L P G +P
Sbjct: 585 PGPKGEAGLDGAKGEKGFQGEKGDR-----GPLGLPGASGLDGRPGPPGTPGPIGVPGPA 639
Query: 152 GPH-QRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDPEGNRR 210
GP +RG +G G + PP G+R RGK+G P+G GD
Sbjct: 640 GPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNR-GERGKKGSRGPKGDKGDQGAPGL 698
Query: 211 LRPPPL 216
P PL
Sbjct: 699 DAPCPL 704
Score = 37.4 bits (85), Expect = 0.014
Identities = 52/180 (28%), Positives = 65/180 (36%), Gaps = 25/180 (13%)
Query: 39 GGGGEAGAHQR-----ICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAG-AGVPRSL 92
G GE GA + G + + S G G GP P P GP G AGV +
Sbjct: 350 GTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPG-LPGPPGPKGEAGVDGQV 408
Query: 93 SPRPVPGSEPSTGTRVGRQG-------HGERSRRCRCCLGDAASPWAQSLPYTQVQGGRG 145
P PG + G G QG GE + + Q + + G G
Sbjct: 409 GPPGQPGDKGERGA-AGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPG 467
Query: 146 FLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDP 205
LP ++GP G G G+ L P PP G + P RGK G P G G P
Sbjct: 468 -LPGQIGP--PGAPGIPGQKGEIGL------PGPPGHDGEKGP-RGKPGDMGPPGPQGPP 517
>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
Length = 655
Score = 38.5 bits (88), Expect = 0.007
Identities = 55/186 (29%), Positives = 68/186 (36%), Gaps = 22/186 (11%)
Query: 39 GGGGEAGAHQRICGTRRGETHKSRS--RDGSTG-RGGPNARSPHPLGPAGAGVPRSLSPR 95
G GE G +GET ++ S G G +G P A P GP G P L
Sbjct: 471 GSPGEKG--------EKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGV 522
Query: 96 PVPGSEPSTGTRVGRQG-HGERSRRCRCCLGDAASPWAQSL---PYTQVQGGRGFLPEEV 151
P P E G +G GE+ R G P A L P G +P
Sbjct: 523 PGPKGEAGLDGAKGEKGFQGEKGDR-----GPLGLPGASGLDGRPGPPGTPGPIGVPGPA 577
Query: 152 GPH-QRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDPEGNRR 210
GP +RG +G G + PP G+R RGK+G P+G GD
Sbjct: 578 GPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNR-GERGKKGSRGPKGDKGDQGAPGL 636
Query: 211 LRPPPL 216
P PL
Sbjct: 637 DAPCPL 642
Score = 37.4 bits (85), Expect = 0.014
Identities = 52/180 (28%), Positives = 65/180 (36%), Gaps = 25/180 (13%)
Query: 39 GGGGEAGAHQR-----ICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAG-AGVPRSL 92
G GE GA + G + + S G G GP P P GP G AGV +
Sbjct: 288 GTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPG-LPGPPGPKGEAGVDGQV 346
Query: 93 SPRPVPGSEPSTGTRVGRQG-------HGERSRRCRCCLGDAASPWAQSLPYTQVQGGRG 145
P PG + G G QG GE + + Q + + G G
Sbjct: 347 GPPGQPGDKGERGA-AGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPG 405
Query: 146 FLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDP 205
LP ++GP G G G+ L P PP G + P RGK G P G G P
Sbjct: 406 -LPGQIGP--PGAPGIPGQKGEIGL------PGPPGHDGEKGP-RGKPGDMGPPGPQGPP 455
>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
Length = 657
Score = 38.5 bits (88), Expect = 0.007
Identities = 55/186 (29%), Positives = 68/186 (36%), Gaps = 22/186 (11%)
Query: 39 GGGGEAGAHQRICGTRRGETHKSRS--RDGSTG-RGGPNARSPHPLGPAGAGVPRSLSPR 95
G GE G +GET ++ S G G +G P A P GP G P L
Sbjct: 473 GSPGEKG--------EKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGV 524
Query: 96 PVPGSEPSTGTRVGRQG-HGERSRRCRCCLGDAASPWAQSL---PYTQVQGGRGFLPEEV 151
P P E G +G GE+ R G P A L P G +P
Sbjct: 525 PGPKGEAGLDGAKGEKGFQGEKGDR-----GPLGLPGASGLDGRPGPPGTPGPIGVPGPA 579
Query: 152 GPH-QRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDPEGNRR 210
GP +RG +G G + PP G+R RGK+G P+G GD
Sbjct: 580 GPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNR-GERGKKGSRGPKGDKGDQGAPGL 638
Query: 211 LRPPPL 216
P PL
Sbjct: 639 DAPCPL 644
Score = 37.4 bits (85), Expect = 0.014
Identities = 52/180 (28%), Positives = 65/180 (36%), Gaps = 25/180 (13%)
Query: 39 GGGGEAGAHQR-----ICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAG-AGVPRSL 92
G GE GA + G + + S G G GP P P GP G AGV +
Sbjct: 290 GTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPG-LPGPPGPKGEAGVDGQV 348
Query: 93 SPRPVPGSEPSTGTRVGRQG-------HGERSRRCRCCLGDAASPWAQSLPYTQVQGGRG 145
P PG + G G QG GE + + Q + + G G
Sbjct: 349 GPPGQPGDKGERGA-AGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPG 407
Query: 146 FLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDP 205
LP ++GP G G G+ L P PP G + P RGK G P G G P
Sbjct: 408 -LPGQIGP--PGAPGIPGQKGEIGL------PGPPGHDGEKGP-RGKPGDMGPPGPQGPP 457
>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
Length = 660
Score = 38.5 bits (88), Expect = 0.007
Identities = 55/186 (29%), Positives = 68/186 (36%), Gaps = 22/186 (11%)
Query: 39 GGGGEAGAHQRICGTRRGETHKSRS--RDGSTG-RGGPNARSPHPLGPAGAGVPRSLSPR 95
G GE G +GET ++ S G G +G P A P GP G P L
Sbjct: 476 GSPGEKG--------EKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGV 527
Query: 96 PVPGSEPSTGTRVGRQG-HGERSRRCRCCLGDAASPWAQSL---PYTQVQGGRGFLPEEV 151
P P E G +G GE+ R G P A L P G +P
Sbjct: 528 PGPKGEAGLDGAKGEKGFQGEKGDR-----GPLGLPGASGLDGRPGPPGTPGPIGVPGPA 582
Query: 152 GPH-QRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDPEGNRR 210
GP +RG +G G + PP G+R RGK+G P+G GD
Sbjct: 583 GPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNR-GERGKKGSRGPKGDKGDQGAPGL 641
Query: 211 LRPPPL 216
P PL
Sbjct: 642 DAPCPL 647
Score = 37.4 bits (85), Expect = 0.014
Identities = 52/180 (28%), Positives = 65/180 (36%), Gaps = 25/180 (13%)
Query: 39 GGGGEAGAHQR-----ICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAG-AGVPRSL 92
G GE GA + G + + S G G GP P P GP G AGV +
Sbjct: 293 GTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPG-LPGPPGPKGEAGVDGQV 351
Query: 93 SPRPVPGSEPSTGTRVGRQG-------HGERSRRCRCCLGDAASPWAQSLPYTQVQGGRG 145
P PG + G G QG GE + + Q + + G G
Sbjct: 352 GPPGQPGDKGERGA-AGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPG 410
Query: 146 FLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDP 205
LP ++GP G G G+ L P PP G + P RGK G P G G P
Sbjct: 411 -LPGQIGP--PGAPGIPGQKGEIGL------PGPPGHDGEKGP-RGKPGDMGPPGPQGPP 460
>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
Length = 664
Score = 38.5 bits (88), Expect = 0.007
Identities = 55/186 (29%), Positives = 68/186 (36%), Gaps = 22/186 (11%)
Query: 39 GGGGEAGAHQRICGTRRGETHKSRS--RDGSTG-RGGPNARSPHPLGPAGAGVPRSLSPR 95
G GE G +GET ++ S G G +G P A P GP G P L
Sbjct: 480 GSPGEKG--------EKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGV 531
Query: 96 PVPGSEPSTGTRVGRQG-HGERSRRCRCCLGDAASPWAQSL---PYTQVQGGRGFLPEEV 151
P P E G +G GE+ R G P A L P G +P
Sbjct: 532 PGPKGEAGLDGAKGEKGFQGEKGDR-----GPLGLPGASGLDGRPGPPGTPGPIGVPGPA 586
Query: 152 GPH-QRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDPEGNRR 210
GP +RG +G G + PP G+R RGK+G P+G GD
Sbjct: 587 GPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNR-GERGKKGSRGPKGDKGDQGAPGL 645
Query: 211 LRPPPL 216
P PL
Sbjct: 646 DAPCPL 651
Score = 37.4 bits (85), Expect = 0.014
Identities = 52/180 (28%), Positives = 65/180 (36%), Gaps = 25/180 (13%)
Query: 39 GGGGEAGAHQR-----ICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAG-AGVPRSL 92
G GE GA + G + + S G G GP P P GP G AGV +
Sbjct: 297 GTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPG-LPGPPGPKGEAGVDGQV 355
Query: 93 SPRPVPGSEPSTGTRVGRQG-------HGERSRRCRCCLGDAASPWAQSLPYTQVQGGRG 145
P PG + G G QG GE + + Q + + G G
Sbjct: 356 GPPGQPGDKGERGA-AGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPG 414
Query: 146 FLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDP 205
LP ++GP G G G+ L P PP G + P RGK G P G G P
Sbjct: 415 -LPGQIGP--PGAPGIPGQKGEIGL------PGPPGHDGEKGP-RGKPGDMGPPGPQGPP 464
>gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]
Length = 676
Score = 38.5 bits (88), Expect = 0.007
Identities = 55/186 (29%), Positives = 68/186 (36%), Gaps = 22/186 (11%)
Query: 39 GGGGEAGAHQRICGTRRGETHKSRS--RDGSTG-RGGPNARSPHPLGPAGAGVPRSLSPR 95
G GE G +GET ++ S G G +G P A P GP G P L
Sbjct: 492 GSPGEKG--------EKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGV 543
Query: 96 PVPGSEPSTGTRVGRQG-HGERSRRCRCCLGDAASPWAQSL---PYTQVQGGRGFLPEEV 151
P P E G +G GE+ R G P A L P G +P
Sbjct: 544 PGPKGEAGLDGAKGEKGFQGEKGDR-----GPLGLPGASGLDGRPGPPGTPGPIGVPGPA 598
Query: 152 GPH-QRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDPEGNRR 210
GP +RG +G G + PP G+R RGK+G P+G GD
Sbjct: 599 GPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNR-GERGKKGSRGPKGDKGDQGAPGL 657
Query: 211 LRPPPL 216
P PL
Sbjct: 658 DAPCPL 663
Score = 37.4 bits (85), Expect = 0.014
Identities = 52/180 (28%), Positives = 65/180 (36%), Gaps = 25/180 (13%)
Query: 39 GGGGEAGAHQR-----ICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAG-AGVPRSL 92
G GE GA + G + + S G G GP P P GP G AGV +
Sbjct: 309 GTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPG-LPGPPGPKGEAGVDGQV 367
Query: 93 SPRPVPGSEPSTGTRVGRQG-------HGERSRRCRCCLGDAASPWAQSLPYTQVQGGRG 145
P PG + G G QG GE + + Q + + G G
Sbjct: 368 GPPGQPGDKGERGA-AGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPG 426
Query: 146 FLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDP 205
LP ++GP G G G+ L P PP G + P RGK G P G G P
Sbjct: 427 -LPGQIGP--PGAPGIPGQKGEIGL------PGPPGHDGEKGP-RGKPGDMGPPGPQGPP 476
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.138 0.465
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,106,266
Number of Sequences: 37866
Number of extensions: 1009443
Number of successful extensions: 5893
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 485
Number of HSP's that attempted gapping in prelim test: 5067
Number of HSP's gapped (non-prelim): 1214
length of query: 277
length of database: 18,247,518
effective HSP length: 101
effective length of query: 176
effective length of database: 14,423,052
effective search space: 2538457152
effective search space used: 2538457152
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.