Guide to the Human Genome
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Name: LOC100128528 Sequence: fasta or formatted (277aa) NCBI GI: 169213314
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {277aa} PREDICTED: hypothetical protein
alt mRNA {277aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         22           2
 C cysteine            4.0         11           2
 D aspartate           2.5          7           1
 E glutamate           5.4         15           2
 F phenylalanine       1.8          5           1
 G glycine            17.7         49           4
 H histidine           2.5          7           2
 I isoleucine          0.7          2           1
 K lysine              1.1          3           1
 L leucine             6.1         17           2
 M methionine          0.4          1           1
 N asparagine          1.8          5           1
 P proline             9.4         26           3
 Q glutamine           4.0         11           1
 R arginine           14.4         40           2
 S serine              5.8         16           1
 T threonine           6.5         18           3
 V valine              4.3         12           1
 W tryptophan          2.5          7           1
 Y tyrosine            1.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128528          1.000   PREDICTED: hypothetical protein 
LOC100128528          1.000   PREDICTED: hypothetical protein 
FLJ37078              0.030   hypothetical protein LOC222183 
CELSR3                0.028   cadherin EGF LAG seven-pass G-type receptor 3 [Homo...
LOC643355             0.028   PREDICTED: hypothetical protein 
LOC643355             0.028   PREDICTED: hypothetical protein 
LOC643355             0.028   PREDICTED: hypothetical protein 
AGAP2                 0.026   centaurin, gamma 1 isoform PIKE-L 
LOC100129630          0.026   PREDICTED: hypothetical protein 
LOC100129630          0.026   PREDICTED: hypothetical protein 
COL6A2                0.026   alpha 2 type VI collagen isoform 2C2a' precursor [H...
COL6A2                0.026   alpha 2 type VI collagen isoform 2C2a precursor [Ho...
COL6A2                0.026   alpha 2 type VI collagen isoform 2C2 precursor [Hom...
ARID1A                0.026   AT rich interactive domain 1A isoform a 
ARID1A                0.026   AT rich interactive domain 1A isoform b 
BAHD1                 0.026   bromo adjacent homology domain containing 1 
COL9A1                0.026   alpha 1 type IX collagen isoform 1 precursor 
COL9A1                0.026   alpha 1 type IX collagen isoform 2 precursor 
GORASP1               0.026   Golgi reassembly stacking protein 1 
COL1A1                0.024   alpha 1 type I collagen preproprotein 
LOC100130360          0.024   PREDICTED: hypothetical protein 
COL5A1                0.024   alpha 1 type V collagen preproprotein 
LOC646396             0.024   PREDICTED: similar to hCG2042704 
COL13A1               0.024   alpha 1 type XIII collagen isoform 20 
COL13A1               0.024   alpha 1 type XIII collagen isoform 18 
COL13A1               0.024   alpha 1 type XIII collagen isoform 17 
COL13A1               0.024   alpha 1 type XIII collagen isoform 16 
COL13A1               0.024   alpha 1 type XIII collagen isoform 14 
COL13A1               0.024   alpha 1 type XIII collagen isoform 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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