Guide to the Human Genome
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Name: LOC100129630 Sequence: fasta or formatted (260aa) NCBI GI: 169167813
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {260aa} PREDICTED: hypothetical protein
alt mRNA {260aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         26           2
 C cysteine            5.4         14           2
 D aspartate           2.3          6           1
 E glutamate           3.1          8           1
 F phenylalanine       2.3          6           2
 G glycine            13.1         34           2
 H histidine           1.9          5           1
 I isoleucine          0.8          2           1
 K lysine              2.3          6           1
 L leucine             4.6         12           3
 M methionine          0.8          2           1
 N asparagine          1.2          3           1
 P proline            11.2         29           4
 Q glutamine           5.8         15           4
 R arginine           16.5         43           5
 S serine             10.0         26           3
 T threonine           3.1          8           1
 V valine              3.8         10           1
 W tryptophan          1.5          4           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129630          1.000   PREDICTED: hypothetical protein 
LOC100129630          0.994   PREDICTED: hypothetical protein 
FLJ37078              0.042   hypothetical protein LOC222183 
SRRM1                 0.038   serine/arginine repetitive matrix 1 
BCL9                  0.032   B-cell CLL/lymphoma 9 
LOC100291634          0.030   PREDICTED: hypothetical protein XP_002346062 
LOC100287232          0.030   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.030   PREDICTED: hypothetical protein 
AIM1                  0.030   absent in melanoma 1 
C6orf150              0.030   hypothetical protein LOC115004 
LOC100128528          0.028   PREDICTED: hypothetical protein 
LOC100128528          0.028   PREDICTED: hypothetical protein 
LOC100128528          0.028   PREDICTED: hypothetical protein 
LOC728650             0.028   PREDICTED: hypothetical protein 
HOXB3                 0.028   homeobox B3 
LOC100293644          0.026   PREDICTED: hypothetical protein 
LOC100287563          0.026   PREDICTED: hypothetical protein 
LOC100287563          0.026   PREDICTED: hypothetical protein XP_002343733 
SRRM2                 0.026   splicing coactivator subunit SRm300 
LOC100292745          0.026   PREDICTED: hypothetical protein 
LOC728650             0.026   PREDICTED: hypothetical protein 
LOC100290074          0.026   PREDICTED: hypothetical protein XP_002346855 
LOC100287034          0.026   PREDICTED: hypothetical protein XP_002342693 
LOC100133885          0.025   PREDICTED: hypothetical protein 
LOC100289408          0.025   PREDICTED: hypothetical protein 
LOC100289408          0.025   PREDICTED: hypothetical protein XP_002344217 
LOC100293176          0.025   PREDICTED: hypothetical protein 
LOC100289054          0.025   PREDICTED: hypothetical protein 
LOC100289054          0.025   PREDICTED: hypothetical protein XP_002343716 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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