Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 169213543
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169213543 PREDICTED: hypothetical protein [Homo sapiens]
(131 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169213725 PREDICTED: hypothetical protein [Homo sapiens] 298 8e-82
gi|169214202 PREDICTED: hypothetical protein [Homo sapiens] 298 8e-82
gi|169213543 PREDICTED: hypothetical protein [Homo sapiens] 298 8e-82
gi|22538470 eomesodermin [Homo sapiens] 39 0.001
gi|122937424 one cut homeobox 3 [Homo sapiens] 39 0.002
gi|148839378 gap junction protein, delta 3, 31.9kDa [Homo sapiens] 38 0.002
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 37 0.003
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 37 0.003
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 37 0.003
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 37 0.003
gi|47825361 non-specific cytotoxic cell receptor protein 1 homol... 37 0.003
gi|169172231 PREDICTED: hypothetical protein [Homo sapiens] 37 0.004
gi|169170975 PREDICTED: hypothetical protein [Homo sapiens] 37 0.004
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 37 0.006
gi|55956899 keratin 9 [Homo sapiens] 37 0.006
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 35 0.013
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 35 0.017
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 35 0.022
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 35 0.022
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 35 0.022
gi|153791535 general control of amino acid synthesis 5-like 2 [H... 35 0.022
gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens] 35 0.022
gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ... 35 0.022
gi|118572599 formin homology 2 domain containing 1 [Homo sapiens] 35 0.022
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 35 0.022
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 35 0.022
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 35 0.022
gi|171543895 ataxin 2 [Homo sapiens] 34 0.029
gi|91208423 thyroid receptor-interacting protein 6 [Homo sapiens] 34 0.029
gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo ... 34 0.037
>gi|169213725 PREDICTED: hypothetical protein [Homo sapiens]
Length = 131
Score = 298 bits (763), Expect = 8e-82
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 1 MVPLFITSDSALTYSPLPEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLH 60
MVPLFITSDSALTYSPLPEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLH
Sbjct: 1 MVPLFITSDSALTYSPLPEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLH 60
Query: 61 WDWGRGAGGSWSGGAWPGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGAC 120
WDWGRGAGGSWSGGAWPGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGAC
Sbjct: 61 WDWGRGAGGSWSGGAWPGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGAC 120
Query: 121 SPWYFPIPAAL 131
SPWYFPIPAAL
Sbjct: 121 SPWYFPIPAAL 131
>gi|169214202 PREDICTED: hypothetical protein [Homo sapiens]
Length = 131
Score = 298 bits (763), Expect = 8e-82
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 1 MVPLFITSDSALTYSPLPEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLH 60
MVPLFITSDSALTYSPLPEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLH
Sbjct: 1 MVPLFITSDSALTYSPLPEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLH 60
Query: 61 WDWGRGAGGSWSGGAWPGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGAC 120
WDWGRGAGGSWSGGAWPGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGAC
Sbjct: 61 WDWGRGAGGSWSGGAWPGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGAC 120
Query: 121 SPWYFPIPAAL 131
SPWYFPIPAAL
Sbjct: 121 SPWYFPIPAAL 131
>gi|169213543 PREDICTED: hypothetical protein [Homo sapiens]
Length = 131
Score = 298 bits (763), Expect = 8e-82
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 1 MVPLFITSDSALTYSPLPEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLH 60
MVPLFITSDSALTYSPLPEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLH
Sbjct: 1 MVPLFITSDSALTYSPLPEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLH 60
Query: 61 WDWGRGAGGSWSGGAWPGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGAC 120
WDWGRGAGGSWSGGAWPGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGAC
Sbjct: 61 WDWGRGAGGSWSGGAWPGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGAC 120
Query: 121 SPWYFPIPAAL 131
SPWYFPIPAAL
Sbjct: 121 SPWYFPIPAAL 131
>gi|22538470 eomesodermin [Homo sapiens]
Length = 686
Score = 38.9 bits (89), Expect = 0.001
Identities = 34/96 (35%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 18 PEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGGAWP 77
P P PA G R P P +P CP GR G GAGGS GG P
Sbjct: 172 PHGPVYPAPNGARYPYGSMLPPGGFPAAV---CPPGRAQFGPGAGAGSGAGGSSGGGGGP 228
Query: 78 GSPGWRLARG-PAHG-----ASAESLGPLGKALVTG 107
G+ ++ ++G P +G A+A S G LG V G
Sbjct: 229 GT--YQYSQGAPLYGPYPGAAAAGSCGGLGGLGVPG 262
>gi|122937424 one cut homeobox 3 [Homo sapiens]
Length = 494
Score = 38.5 bits (88), Expect = 0.002
Identities = 38/111 (34%), Positives = 44/111 (39%), Gaps = 13/111 (11%)
Query: 11 ALTYSPLPEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGS 70
AL +P P PPP P GPP D +PP+ P LL RG G
Sbjct: 209 ALHGAPQPPPPPPPPPLAAYGPPGHLAGD--KLLPPAAFEPHAALLGRAEDALARGLPG- 265
Query: 71 WSGGAWPGSPGWRLARGPAHGASAESLGPLGKALVTGWEG--GWRGGQGGA 119
GG GS G G++A L PLG G G G GG GG+
Sbjct: 266 --GGGGTGSGG------AGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGS 308
>gi|148839378 gap junction protein, delta 3, 31.9kDa [Homo sapiens]
Length = 294
Score = 38.1 bits (87), Expect = 0.002
Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 16 PLPEPPPTPALGGQR-GPPTCQCPDFPYPVPPS-EGCPSGR 54
P P PPP PAL +R GP C P + +P P S C SGR
Sbjct: 240 PPPPPPPPPALPSRRPGPEPCAPPAYAHPAPASLRECGSGR 280
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 37.4 bits (85), Expect = 0.003
Identities = 35/109 (32%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 21 PPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWG----------RGAGGS 70
P P + G +G P C PY +P G P L LH G +G+ GS
Sbjct: 460 PGIPGVDGPKGEPGLLCTQCPY-IPGPPGLPG---LPGLHGVKGIPGRQGAAGLKGSPGS 515
Query: 71 WSGGAWPGSPGWRLARGP--AHGASAESLGPLGKALVTGWEGGWRGGQG 117
PG PG+ A+G G E+L P G+ V G + G RG G
Sbjct: 516 PGNTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPG-DPGLRGQPG 563
Score = 26.9 bits (58), Expect = 4.6
Identities = 19/43 (44%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Query: 77 PGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGA 119
PG PG R ARGP GP G V G G R G GA
Sbjct: 359 PGPPGPRGARGPQ--------GPSGPPGVPGSPGSSRPGLRGA 393
Score = 26.9 bits (58), Expect = 4.6
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 24 PALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGGAWPGSPGWR 83
P G RG P + D P +G P + L+L + +G G PG PG
Sbjct: 553 PGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGE--KGDQGP------PGDPGSP 604
Query: 84 LARGPAHGASAESLGPLGKALVTGWEG 110
+ GPA A GP G+ + G +G
Sbjct: 605 GSPGPAGPAGPPGYGPQGEPGLQGTQG 631
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 37.4 bits (85), Expect = 0.003
Identities = 35/109 (32%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 21 PPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWG----------RGAGGS 70
P P + G +G P C PY +P G P L LH G +G+ GS
Sbjct: 460 PGIPGVDGPKGEPGLLCTQCPY-IPGPPGLPG---LPGLHGVKGIPGRQGAAGLKGSPGS 515
Query: 71 WSGGAWPGSPGWRLARGP--AHGASAESLGPLGKALVTGWEGGWRGGQG 117
PG PG+ A+G G E+L P G+ V G + G RG G
Sbjct: 516 PGNTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPG-DPGLRGQPG 563
Score = 26.9 bits (58), Expect = 4.6
Identities = 19/43 (44%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Query: 77 PGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGA 119
PG PG R ARGP GP G V G G R G GA
Sbjct: 359 PGPPGPRGARGPQ--------GPSGPPGVPGSPGSSRPGLRGA 393
Score = 26.9 bits (58), Expect = 4.6
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 24 PALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGGAWPGSPGWR 83
P G RG P + D P +G P + L+L + +G G PG PG
Sbjct: 553 PGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGE--KGDQGP------PGDPGSP 604
Query: 84 LARGPAHGASAESLGPLGKALVTGWEG 110
+ GPA A GP G+ + G +G
Sbjct: 605 GSPGPAGPAGPPGYGPQGEPGLQGTQG 631
Score = 26.2 bits (56), Expect = 7.8
Identities = 30/106 (28%), Positives = 39/106 (36%), Gaps = 24/106 (22%)
Query: 18 PEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGGAWP 77
P PP TP G +G P P PP P G RG G P
Sbjct: 1360 PGPPGTPGEPGMQGEP-------GPPGPPGNLGPCG----------PRGKPGK---DGKP 1399
Query: 78 GSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGACSPW 123
G+PG +G + S GP G + G +G + G G+ + W
Sbjct: 1400 GTPGPAGEKG--NKGSKGEPGPAGSDGLPGLKG--KRGDSGSPATW 1441
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 37.4 bits (85), Expect = 0.003
Identities = 35/109 (32%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 21 PPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWG----------RGAGGS 70
P P + G +G P C PY +P G P L LH G +G+ GS
Sbjct: 460 PGIPGVDGPKGEPGLLCTQCPY-IPGPPGLPG---LPGLHGVKGIPGRQGAAGLKGSPGS 515
Query: 71 WSGGAWPGSPGWRLARGP--AHGASAESLGPLGKALVTGWEGGWRGGQG 117
PG PG+ A+G G E+L P G+ V G + G RG G
Sbjct: 516 PGNTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPG-DPGLRGQPG 563
Score = 26.9 bits (58), Expect = 4.6
Identities = 19/43 (44%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Query: 77 PGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGA 119
PG PG R ARGP GP G V G G R G GA
Sbjct: 359 PGPPGPRGARGPQ--------GPSGPPGVPGSPGSSRPGLRGA 393
Score = 26.9 bits (58), Expect = 4.6
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 24 PALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGGAWPGSPGWR 83
P G RG P + D P +G P + L+L + +G G PG PG
Sbjct: 553 PGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGE--KGDQGP------PGDPGSP 604
Query: 84 LARGPAHGASAESLGPLGKALVTGWEG 110
+ GPA A GP G+ + G +G
Sbjct: 605 GSPGPAGPAGPPGYGPQGEPGLQGTQG 631
Score = 26.2 bits (56), Expect = 7.8
Identities = 30/106 (28%), Positives = 39/106 (36%), Gaps = 24/106 (22%)
Query: 18 PEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGGAWP 77
P PP TP G +G P P PP P G RG G P
Sbjct: 1360 PGPPGTPGEPGMQGEP-------GPPGPPGNLGPCG----------PRGKPGK---DGKP 1399
Query: 78 GSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGACSPW 123
G+PG +G + S GP G + G +G + G G+ + W
Sbjct: 1400 GTPGPAGEKG--NKGSKGEPGPAGSDGLPGLKG--KRGDSGSPATW 1441
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 37.4 bits (85), Expect = 0.003
Identities = 35/109 (32%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 21 PPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWG----------RGAGGS 70
P P + G +G P C PY +P G P L LH G +G+ GS
Sbjct: 460 PGIPGVDGPKGEPGLLCTQCPY-IPGPPGLPG---LPGLHGVKGIPGRQGAAGLKGSPGS 515
Query: 71 WSGGAWPGSPGWRLARGP--AHGASAESLGPLGKALVTGWEGGWRGGQG 117
PG PG+ A+G G E+L P G+ V G + G RG G
Sbjct: 516 PGNTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPG-DPGLRGQPG 563
Score = 26.9 bits (58), Expect = 4.6
Identities = 19/43 (44%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Query: 77 PGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGA 119
PG PG R ARGP GP G V G G R G GA
Sbjct: 359 PGPPGPRGARGPQ--------GPSGPPGVPGSPGSSRPGLRGA 393
Score = 26.9 bits (58), Expect = 4.6
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 24 PALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGGAWPGSPGWR 83
P G RG P + D P +G P + L+L + +G G PG PG
Sbjct: 553 PGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGE--KGDQGP------PGDPGSP 604
Query: 84 LARGPAHGASAESLGPLGKALVTGWEG 110
+ GPA A GP G+ + G +G
Sbjct: 605 GSPGPAGPAGPPGYGPQGEPGLQGTQG 631
Score = 26.2 bits (56), Expect = 7.8
Identities = 30/106 (28%), Positives = 39/106 (36%), Gaps = 24/106 (22%)
Query: 18 PEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGGAWP 77
P PP TP G +G P P PP P G RG G P
Sbjct: 1360 PGPPGTPGEPGMQGEP-------GPPGPPGNLGPCG----------PRGKPGK---DGKP 1399
Query: 78 GSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGACSPW 123
G+PG +G + S GP G + G +G + G G+ + W
Sbjct: 1400 GTPGPAGEKG--NKGSKGEPGPAGSDGLPGLKG--KRGDSGSPATW 1441
>gi|47825361 non-specific cytotoxic cell receptor protein 1
homolog [Homo sapiens]
Length = 275
Score = 37.4 bits (85), Expect = 0.003
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 15 SPLPEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGG 69
SP P PPP P+ P + P+ P P PSE + +LLL +WG +GG
Sbjct: 33 SPPPSPPPLPSPPSLPSPAAPEAPELPEPAQPSE-AHARQLLLE---EWGPLSGG 83
>gi|169172231 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 37.0 bits (84), Expect = 0.004
Identities = 41/143 (28%), Positives = 49/143 (34%), Gaps = 37/143 (25%)
Query: 11 ALTYSPLPEPPPTPALGG-----------QRGPPTCQCPDF------------------- 40
ALT +P PP P GG QRG T
Sbjct: 4 ALTCGGVPSPPSAPGGGGAALAALSARAAQRGSTTFVAASLHRALTLGASSGEGSGRDNN 63
Query: 41 -PYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGGAWP----GSPGWRLARGPAHGASAE 95
P P PP + + G G G + + G P G GW RG A GA+
Sbjct: 64 TPPPPPPRRRRRPPVVAATHRRRLGSGLGLTTTPGLGPRALCGPRGWAAGRGEA-GATGL 122
Query: 96 SLGPLGKALVTGWEGGWRGGQGG 118
L +G A V GW GG+ G GG
Sbjct: 123 RLS-VGAATVRGWAGGYFRGDGG 144
>gi|169170975 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 37.0 bits (84), Expect = 0.004
Identities = 41/143 (28%), Positives = 49/143 (34%), Gaps = 37/143 (25%)
Query: 11 ALTYSPLPEPPPTPALGG-----------QRGPPTCQCPDF------------------- 40
ALT +P PP P GG QRG T
Sbjct: 4 ALTCGGVPSPPSAPGGGGAALAALSARAAQRGSTTFVAASLHRALTLGASSGEGSGRDNN 63
Query: 41 -PYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGGAWP----GSPGWRLARGPAHGASAE 95
P P PP + + G G G + + G P G GW RG A GA+
Sbjct: 64 TPPPPPPRRRRRPPVVAATHRRRLGSGLGLTTTPGLGPRALCGPRGWAAGRGEA-GATGL 122
Query: 96 SLGPLGKALVTGWEGGWRGGQGG 118
L +G A V GW GG+ G GG
Sbjct: 123 RLS-VGAATVRGWAGGYFRGDGG 144
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 36.6 bits (83), Expect = 0.006
Identities = 31/105 (29%), Positives = 39/105 (37%), Gaps = 3/105 (2%)
Query: 18 PEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGGAWP 77
P PP P L G GPP P P P PP G P + + L + +G G P
Sbjct: 184 PGPPGLPGLQGPVGPPGFTGPPGP-PGPP--GPPGEKGQMGLSFQGPKGDKGDQGVSGPP 240
Query: 78 GSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGACSP 122
G PG + A+ G G+ G G G+ G P
Sbjct: 241 GVPGQAQVQEKGDFATKGEKGQKGEPGFQGMPGVGEKGEPGKPGP 285
Score = 26.9 bits (58), Expect = 4.6
Identities = 37/124 (29%), Positives = 42/124 (33%), Gaps = 23/124 (18%)
Query: 13 TYSPLPEPPPT--PALGGQRGPPTCQCPDFPYPVPPSEGCPS-----------GRLLLSL 59
T P EP P P L GQ GPP PVP G P G SL
Sbjct: 351 TPGPRGEPGPKGFPGLPGQPGPP-------GLPVPGQAGAPGFPGERGEKGDRGFPGTSL 403
Query: 60 HWDWGR-GAGGSWSGGAWPGSPGWRLARGPAHGASAESLGPLGKALVTGWEG--GWRGGQ 116
GR G G PG PG+ GP G G+ G G +G +
Sbjct: 404 PGPSGRDGLPGPPGSPGPPGQPGYTNGIVECQPGPPGDQGPPGIPGQPGFIGEIGEKGQK 463
Query: 117 GGAC 120
G +C
Sbjct: 464 GESC 467
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 36.6 bits (83), Expect = 0.006
Identities = 22/58 (37%), Positives = 26/58 (44%)
Query: 64 GRGAGGSWSGGAWPGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGACS 121
G GG SGG + G G R G ++G + S G G G GG GG GG S
Sbjct: 494 GGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHS 551
Score = 32.7 bits (73), Expect = 0.083
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 64 GRGAGGSWSGGAWPGSPGWRLARGPAHGASA----ESLGPLGKALVTGWEGGWRGGQGGA 119
G G+GG SGG + G G R G +HG + ES G G GG GG G
Sbjct: 561 GSGSGGG-SGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK 619
Query: 120 CS 121
S
Sbjct: 620 SS 621
Score = 32.3 bits (72), Expect = 0.11
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 58 SLHWDWGRGAGGSWS-----GGAWPGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGW 112
S + +G G+GG +S GG GS G+ A G + +S G G G+ GG+
Sbjct: 68 SFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGFGGGFGGGSGGGFGGGY 127
Query: 113 RGGQGG 118
G GG
Sbjct: 128 GSGFGG 133
Score = 30.4 bits (67), Expect = 0.41
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 63 WGRGAGGSWSGGAWPGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGA 119
+G G+GG SGG+ G G G +G + S G G G G RGG GG+
Sbjct: 534 YGGGSGGGHSGGSGGGHSG---GSGGNYGGGSGSGGGSGGGY--GGGSGSRGGSGGS 585
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 35.4 bits (80), Expect = 0.013
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 16 PLPEPPPTPALGGQRGPPTCQCPDFPYPVP-PSEGCPSGRLLLSLHWD-WGRGAGGSWSG 73
P P+ P P+ Q T P FP P P P++ SG LLS WD GRGAG + +G
Sbjct: 594 PAPQAPQAPSEVPQLVSETWASPLFPAPRPFPAQSSASGSFLLS-GWDPEGRGAGETLAG 652
Score = 30.4 bits (67), Expect = 0.41
Identities = 31/116 (26%), Positives = 39/116 (33%), Gaps = 39/116 (33%)
Query: 18 PEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLL--------------------- 56
P PPP P PP P FP+P PP+ P L
Sbjct: 446 PRPPPPP-------PPPRDGP-FPWPWPPAHSAPRPGTLSSPFPLLDGFPGADPDDVLTV 497
Query: 57 ------LSLHWDWGRGAGGSWSGGAWPGSPGWRLARGPAHGASAESLGPLGKALVT 106
L+L W + G+ GG G+P W+ A P A P +AL T
Sbjct: 498 TESSRGLNLECLWEKARRGAGRGG---GAPAWQPASAPP-APHANPSNPFYEALST 549
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 35.0 bits (79), Expect = 0.017
Identities = 32/91 (35%), Positives = 35/91 (38%), Gaps = 18/91 (19%)
Query: 16 PLPEPPPTPALGGQRGPPTCQCPDFPYPVPPSEG----CPSGRLLLSLHWDWGRGAGGSW 71
PLP PP PA PP Q P P P PP EG +SL + R GGS
Sbjct: 210 PLPPPPQPPA------PPQQQQPPPPQPQPPPEGGAVRAGGAARPVSLR-EVVRYLGGS- 261
Query: 72 SGGAWPGSPGWRLARGPAHGASAESLGPLGK 102
G G RL RG G E G+
Sbjct: 262 ------GGAGGRLTRGRVQGLLEEEAAARGR 286
Score = 27.7 bits (60), Expect = 2.7
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 14/40 (35%)
Query: 15 SPLPEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGR 54
SP+P PP PAL G G P GCP GR
Sbjct: 427 SPVPLPPGKPALPGADGTPF--------------GCPPGR 452
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 34.7 bits (78), Expect = 0.022
Identities = 30/83 (36%), Positives = 34/83 (40%), Gaps = 14/83 (16%)
Query: 15 SPLPEPPPTPALGGQRGPPTCQCPDFPYPV-PPSEGCPSGRLLLSLHWDWGRGAGGSWSG 73
S +P P P + G+ GPP P P P PP P GR G GS
Sbjct: 928 SDVPGPAGLPGVPGREGPP--GFPGLPGPPGPPGREGPPGR----------TGQKGSLGE 975
Query: 74 GAWPGSPGWRLARGPAHGASAES 96
PG G + A GPA GA ES
Sbjct: 976 AGAPGHKGSKGAPGPA-GARGES 997
Score = 26.2 bits (56), Expect = 7.8
Identities = 41/137 (29%), Positives = 47/137 (34%), Gaps = 25/137 (18%)
Query: 15 SPLPEPPPTPALGGQRGP-----------PTCQCP-DFPYPVPPSEGCPSGRLLLSLHWD 62
S P PP P G GP P Q P DF +G R +
Sbjct: 1279 SSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGE 1338
Query: 63 WGRGAGGSWSGGAWPGSPGWRLARG--PAHGASAESL----GPLGKALVTGWEGGWRGGQ 116
G GG + G + PG PG RG G ES+ GP G G G+ G Q
Sbjct: 1339 RGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGI--GYEGRQ 1396
Query: 117 G-----GACSPWYFPIP 128
G G P FP P
Sbjct: 1397 GPPGPPGPPGPPSFPGP 1413
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 34.7 bits (78), Expect = 0.022
Identities = 30/83 (36%), Positives = 34/83 (40%), Gaps = 14/83 (16%)
Query: 15 SPLPEPPPTPALGGQRGPPTCQCPDFPYPV-PPSEGCPSGRLLLSLHWDWGRGAGGSWSG 73
S +P P P + G+ GPP P P P PP P GR G GS
Sbjct: 513 SDVPGPAGLPGVPGREGPP--GFPGLPGPPGPPGREGPPGR----------TGQKGSLGE 560
Query: 74 GAWPGSPGWRLARGPAHGASAES 96
PG G + A GPA GA ES
Sbjct: 561 AGAPGHKGSKGAPGPA-GARGES 582
Score = 26.2 bits (56), Expect = 7.8
Identities = 41/137 (29%), Positives = 47/137 (34%), Gaps = 25/137 (18%)
Query: 15 SPLPEPPPTPALGGQRGP-----------PTCQCP-DFPYPVPPSEGCPSGRLLLSLHWD 62
S P PP P G GP P Q P DF +G R +
Sbjct: 864 SSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGE 923
Query: 63 WGRGAGGSWSGGAWPGSPGWRLARG--PAHGASAESL----GPLGKALVTGWEGGWRGGQ 116
G GG + G + PG PG RG G ES+ GP G G G+ G Q
Sbjct: 924 RGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGI--GYEGRQ 981
Query: 117 G-----GACSPWYFPIP 128
G G P FP P
Sbjct: 982 GPPGPPGPPGPPSFPGP 998
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 34.7 bits (78), Expect = 0.022
Identities = 30/83 (36%), Positives = 34/83 (40%), Gaps = 14/83 (16%)
Query: 15 SPLPEPPPTPALGGQRGPPTCQCPDFPYPV-PPSEGCPSGRLLLSLHWDWGRGAGGSWSG 73
S +P P P + G+ GPP P P P PP P GR G GS
Sbjct: 693 SDVPGPAGLPGVPGREGPP--GFPGLPGPPGPPGREGPPGR----------TGQKGSLGE 740
Query: 74 GAWPGSPGWRLARGPAHGASAES 96
PG G + A GPA GA ES
Sbjct: 741 AGAPGHKGSKGAPGPA-GARGES 762
Score = 26.2 bits (56), Expect = 7.8
Identities = 41/137 (29%), Positives = 47/137 (34%), Gaps = 25/137 (18%)
Query: 15 SPLPEPPPTPALGGQRGP-----------PTCQCP-DFPYPVPPSEGCPSGRLLLSLHWD 62
S P PP P G GP P Q P DF +G R +
Sbjct: 1044 SSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGE 1103
Query: 63 WGRGAGGSWSGGAWPGSPGWRLARG--PAHGASAESL----GPLGKALVTGWEGGWRGGQ 116
G GG + G + PG PG RG G ES+ GP G G G+ G Q
Sbjct: 1104 RGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGI--GYEGRQ 1161
Query: 117 G-----GACSPWYFPIP 128
G G P FP P
Sbjct: 1162 GPPGPPGPPGPPSFPGP 1178
>gi|153791535 general control of amino acid synthesis 5-like 2 [Homo
sapiens]
Length = 837
Score = 34.7 bits (78), Expect = 0.022
Identities = 35/116 (30%), Positives = 42/116 (36%), Gaps = 10/116 (8%)
Query: 15 SPLPEPPPTPALGGQRGP-PTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSG 73
SP P P PTPA P PT P P P P+G G G+GG+ SG
Sbjct: 21 SPAPAPTPTPAPSPASAPIPT----PTPAPAPAPAAAPAGSTGTG---GPGVGSGGAGSG 73
Query: 74 GAWPGSPGW-RLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGACSPWYFPIP 128
G P PG + R A L K G + + C+ W P P
Sbjct: 74 GD-PARPGLSQQQRASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPKP 128
>gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens]
Length = 483
Score = 34.7 bits (78), Expect = 0.022
Identities = 30/79 (37%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 46 PSEGCP--SGRLLLSLHWDWGRGAGGSWSGGAWPGSPGWRLARGPAH-GASAESLGPLGK 102
PS G P SGR S + G G GG GG PG A GP G S+G +G
Sbjct: 6 PSGGGPGGSGRARTSSFAEPGGGGGG---GGGGPGGS----ASGPGGTGGGKASVGAMGG 58
Query: 103 ALVTGWEGGWRGGQGGACS 121
+ GG GG GG S
Sbjct: 59 GVGASSSGGGPGGSGGGGS 77
>gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor [Homo
sapiens]
Length = 1336
Score = 34.7 bits (78), Expect = 0.022
Identities = 28/81 (34%), Positives = 31/81 (38%), Gaps = 17/81 (20%)
Query: 39 DFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGGAWPGSPGWRLARGPA-----HGAS 93
DFPYP G P GR W G W G+W P GPA H AS
Sbjct: 1136 DFPYPYAERLGPPPGRY-------WSVDKLGGWRAGSWDYLPP---RSGPAAWHCRHCAS 1185
Query: 94 AESLGPLGKALVT--GWEGGW 112
E L P + G +GGW
Sbjct: 1186 LELLPPPRHLSCSHDGLDGGW 1206
>gi|118572599 formin homology 2 domain containing 1 [Homo sapiens]
Length = 1164
Score = 34.7 bits (78), Expect = 0.022
Identities = 26/85 (30%), Positives = 30/85 (35%), Gaps = 21/85 (24%)
Query: 16 PLPEPPPTPALGGQRGPPTCQ-CPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGG 74
P P PPP P G PP P+ VP S P+ R + L W + AGG
Sbjct: 585 PPPLPPPPPIKGPFPPPPPLPLAAPLPHSVPDSSALPTKRKTVKLFWRELKLAGG----- 639
Query: 75 AWPGSPGWRLARGPAHGASAESLGP 99
HG SA GP
Sbjct: 640 ---------------HGVSASRFGP 649
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 34.7 bits (78), Expect = 0.022
Identities = 28/96 (29%), Positives = 32/96 (33%), Gaps = 16/96 (16%)
Query: 24 PALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGGAWPGSPGWR 83
P G P QC +P P G G G G GG GG G G
Sbjct: 224 PLQNSHEGYPNSQCNHYPGYSRPGAGGGGGG---------GGGGGGGSGGGGGGGGAG-- 272
Query: 84 LARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGA 119
A GA A ++ A GG GG GG+
Sbjct: 273 -----AGGAGAGAVAAAAAAAAAAAGGGGGGGYGGS 303
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 34.7 bits (78), Expect = 0.022
Identities = 28/96 (29%), Positives = 32/96 (33%), Gaps = 16/96 (16%)
Query: 24 PALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGGAWPGSPGWR 83
P G P QC +P P G G G G GG GG G G
Sbjct: 224 PLQNSHEGYPNSQCNHYPGYSRPGAGGGGGG---------GGGGGGGSGGGGGGGGAG-- 272
Query: 84 LARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGA 119
A GA A ++ A GG GG GG+
Sbjct: 273 -----AGGAGAGAVAAAAAAAAAAAGGGGGGGYGGS 303
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 34.7 bits (78), Expect = 0.022
Identities = 28/96 (29%), Positives = 32/96 (33%), Gaps = 16/96 (16%)
Query: 24 PALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGGAWPGSPGWR 83
P G P QC +P P G G G G GG GG G G
Sbjct: 224 PLQNSHEGYPNSQCNHYPGYSRPGAGGGGGG---------GGGGGGGSGGGGGGGGAG-- 272
Query: 84 LARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGA 119
A GA A ++ A GG GG GG+
Sbjct: 273 -----AGGAGAGAVAAAAAAAAAAAGGGGGGGYGGS 303
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 34.3 bits (77), Expect = 0.029
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 15 SPLPEPPPTPALGGQRGP------PTCQCPDFPYPVPPSEG 49
SP P+ P+P++ G + P P C P+ YPVP S G
Sbjct: 937 SPRPQAQPSPSMVGHQQPTPVYTQPVCFAPNMMYPVPVSPG 977
>gi|91208423 thyroid receptor-interacting protein 6 [Homo sapiens]
Length = 476
Score = 34.3 bits (77), Expect = 0.029
Identities = 36/129 (27%), Positives = 46/129 (35%), Gaps = 30/129 (23%)
Query: 18 PEPPPTPALGGQRGPPTCQCPDFPY--PVPPS---EGCPSG-------RLLLSLHWDWGR 65
P PPP G + P P PY P P S P+G ++ +
Sbjct: 125 PPPPPAYRTGSLKPNPASPLPASPYGGPTPASYTTASTPAGPAFPVQVKVAQPVRGCGPP 184
Query: 66 GAGGSWSGGAWPG------------SPGWRLARGPAHGASAESLGPLGKALVTGWEGGWR 113
G S + G PG PG+R R P GA E+ G V+G G R
Sbjct: 185 RRGASQASGPLPGPHFPLPGRGEVWGPGYRSQREPGPGAKEEAAG------VSGPAGRGR 238
Query: 114 GGQGGACSP 122
GG+ G P
Sbjct: 239 GGEHGPQVP 247
>gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo
sapiens]
Length = 459
Score = 33.9 bits (76), Expect = 0.037
Identities = 37/116 (31%), Positives = 47/116 (40%), Gaps = 19/116 (16%)
Query: 19 EPPPTPALGGQRG---PPTCQCPDFP-YPVPPSEG-----CPSGRLLLSLHWDWGRGAGG 69
+PPP R P + PDF P P E P G+++L L + GRG G
Sbjct: 267 KPPPQVLTAEPREDATPGEGRLPDFEKQPHSPRERLDPPPAPFGQMILILGFRVGRGGTG 326
Query: 70 SWSGGAWPGSPGWRLARGPAHGASAESLGPLGKAL-----VTGWEGG--WRGGQGG 118
SWS W G G + A+ L GK+ + G GG RGG GG
Sbjct: 327 SWS---WRRGAGSAELPGCSCAQLAQQLARAGKSTESRNRLNGRRGGVEARGGGGG 379
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.142 0.521
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,525,598
Number of Sequences: 37866
Number of extensions: 593944
Number of successful extensions: 4497
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 446
Number of HSP's that attempted gapping in prelim test: 3434
Number of HSP's gapped (non-prelim): 1405
length of query: 131
length of database: 18,247,518
effective HSP length: 91
effective length of query: 40
effective length of database: 14,801,712
effective search space: 592068480
effective search space used: 592068480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.