Guide to the Human Genome
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Search of human proteins with 169213543

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169213543 PREDICTED: hypothetical protein [Homo sapiens]
         (131 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169213725 PREDICTED: hypothetical protein [Homo sapiens]           298   8e-82
gi|169214202 PREDICTED: hypothetical protein [Homo sapiens]           298   8e-82
gi|169213543 PREDICTED: hypothetical protein [Homo sapiens]           298   8e-82
gi|22538470 eomesodermin [Homo sapiens]                                39   0.001
gi|122937424 one cut homeobox 3 [Homo sapiens]                         39   0.002
gi|148839378 gap junction protein, delta 3, 31.9kDa [Homo sapiens]     38   0.002
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s...    37   0.003
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s...    37   0.003
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s...    37   0.003
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s...    37   0.003
gi|47825361 non-specific cytotoxic cell receptor protein 1 homol...    37   0.003
gi|169172231 PREDICTED: hypothetical protein [Homo sapiens]            37   0.004
gi|169170975 PREDICTED: hypothetical protein [Homo sapiens]            37   0.004
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]     37   0.006
gi|55956899 keratin 9 [Homo sapiens]                                   37   0.006
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]                    35   0.013
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]     35   0.017
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho...    35   0.022
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho...    35   0.022
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho...    35   0.022
gi|153791535 general control of amino acid synthesis 5-like 2 [H...    35   0.022
gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens]            35   0.022
gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ...    35   0.022
gi|118572599 formin homology 2 domain containing 1 [Homo sapiens]      35   0.022
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ...    35   0.022
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ...    35   0.022
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ...    35   0.022
gi|171543895 ataxin 2 [Homo sapiens]                                   34   0.029
gi|91208423 thyroid receptor-interacting protein 6 [Homo sapiens]      34   0.029
gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo ...    34   0.037

>gi|169213725 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 131

 Score =  298 bits (763), Expect = 8e-82
 Identities = 131/131 (100%), Positives = 131/131 (100%)

Query: 1   MVPLFITSDSALTYSPLPEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLH 60
           MVPLFITSDSALTYSPLPEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLH
Sbjct: 1   MVPLFITSDSALTYSPLPEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLH 60

Query: 61  WDWGRGAGGSWSGGAWPGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGAC 120
           WDWGRGAGGSWSGGAWPGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGAC
Sbjct: 61  WDWGRGAGGSWSGGAWPGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGAC 120

Query: 121 SPWYFPIPAAL 131
           SPWYFPIPAAL
Sbjct: 121 SPWYFPIPAAL 131


>gi|169214202 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 131

 Score =  298 bits (763), Expect = 8e-82
 Identities = 131/131 (100%), Positives = 131/131 (100%)

Query: 1   MVPLFITSDSALTYSPLPEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLH 60
           MVPLFITSDSALTYSPLPEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLH
Sbjct: 1   MVPLFITSDSALTYSPLPEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLH 60

Query: 61  WDWGRGAGGSWSGGAWPGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGAC 120
           WDWGRGAGGSWSGGAWPGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGAC
Sbjct: 61  WDWGRGAGGSWSGGAWPGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGAC 120

Query: 121 SPWYFPIPAAL 131
           SPWYFPIPAAL
Sbjct: 121 SPWYFPIPAAL 131


>gi|169213543 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 131

 Score =  298 bits (763), Expect = 8e-82
 Identities = 131/131 (100%), Positives = 131/131 (100%)

Query: 1   MVPLFITSDSALTYSPLPEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLH 60
           MVPLFITSDSALTYSPLPEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLH
Sbjct: 1   MVPLFITSDSALTYSPLPEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLH 60

Query: 61  WDWGRGAGGSWSGGAWPGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGAC 120
           WDWGRGAGGSWSGGAWPGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGAC
Sbjct: 61  WDWGRGAGGSWSGGAWPGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGAC 120

Query: 121 SPWYFPIPAAL 131
           SPWYFPIPAAL
Sbjct: 121 SPWYFPIPAAL 131


>gi|22538470 eomesodermin [Homo sapiens]
          Length = 686

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 34/96 (35%), Positives = 42/96 (43%), Gaps = 11/96 (11%)

Query: 18  PEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGGAWP 77
           P  P  PA  G R P     P   +P      CP GR         G GAGGS  GG  P
Sbjct: 172 PHGPVYPAPNGARYPYGSMLPPGGFPAAV---CPPGRAQFGPGAGAGSGAGGSSGGGGGP 228

Query: 78  GSPGWRLARG-PAHG-----ASAESLGPLGKALVTG 107
           G+  ++ ++G P +G     A+A S G LG   V G
Sbjct: 229 GT--YQYSQGAPLYGPYPGAAAAGSCGGLGGLGVPG 262


>gi|122937424 one cut homeobox 3 [Homo sapiens]
          Length = 494

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 38/111 (34%), Positives = 44/111 (39%), Gaps = 13/111 (11%)

Query: 11  ALTYSPLPEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGS 70
           AL  +P P PPP P      GPP     D    +PP+   P   LL        RG  G 
Sbjct: 209 ALHGAPQPPPPPPPPPLAAYGPPGHLAGD--KLLPPAAFEPHAALLGRAEDALARGLPG- 265

Query: 71  WSGGAWPGSPGWRLARGPAHGASAESLGPLGKALVTGWEG--GWRGGQGGA 119
             GG   GS G         G++A  L PLG     G  G  G  GG GG+
Sbjct: 266 --GGGGTGSGG------AGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGS 308


>gi|148839378 gap junction protein, delta 3, 31.9kDa [Homo sapiens]
          Length = 294

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 16  PLPEPPPTPALGGQR-GPPTCQCPDFPYPVPPS-EGCPSGR 54
           P P PPP PAL  +R GP  C  P + +P P S   C SGR
Sbjct: 240 PPPPPPPPPALPSRRPGPEPCAPPAYAHPAPASLRECGSGR 280


>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
           sapiens]
          Length = 1424

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 35/109 (32%), Positives = 45/109 (41%), Gaps = 17/109 (15%)

Query: 21  PPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWG----------RGAGGS 70
           P  P + G +G P   C   PY +P   G P    L  LH   G          +G+ GS
Sbjct: 460 PGIPGVDGPKGEPGLLCTQCPY-IPGPPGLPG---LPGLHGVKGIPGRQGAAGLKGSPGS 515

Query: 71  WSGGAWPGSPGWRLARGP--AHGASAESLGPLGKALVTGWEGGWRGGQG 117
                 PG PG+  A+G     G   E+L P G+  V G + G RG  G
Sbjct: 516 PGNTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPG-DPGLRGQPG 563



 Score = 26.9 bits (58), Expect = 4.6
 Identities = 19/43 (44%), Positives = 19/43 (44%), Gaps = 8/43 (18%)

Query: 77  PGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGA 119
           PG PG R ARGP         GP G   V G  G  R G  GA
Sbjct: 359 PGPPGPRGARGPQ--------GPSGPPGVPGSPGSSRPGLRGA 393



 Score = 26.9 bits (58), Expect = 4.6
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 8/87 (9%)

Query: 24  PALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGGAWPGSPGWR 83
           P   G RG P  +  D     P  +G P  +  L+L  +  +G  G       PG PG  
Sbjct: 553 PGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGE--KGDQGP------PGDPGSP 604

Query: 84  LARGPAHGASAESLGPLGKALVTGWEG 110
            + GPA  A     GP G+  + G +G
Sbjct: 605 GSPGPAGPAGPPGYGPQGEPGLQGTQG 631


>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
           sapiens]
          Length = 1494

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 35/109 (32%), Positives = 45/109 (41%), Gaps = 17/109 (15%)

Query: 21  PPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWG----------RGAGGS 70
           P  P + G +G P   C   PY +P   G P    L  LH   G          +G+ GS
Sbjct: 460 PGIPGVDGPKGEPGLLCTQCPY-IPGPPGLPG---LPGLHGVKGIPGRQGAAGLKGSPGS 515

Query: 71  WSGGAWPGSPGWRLARGP--AHGASAESLGPLGKALVTGWEGGWRGGQG 117
                 PG PG+  A+G     G   E+L P G+  V G + G RG  G
Sbjct: 516 PGNTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPG-DPGLRGQPG 563



 Score = 26.9 bits (58), Expect = 4.6
 Identities = 19/43 (44%), Positives = 19/43 (44%), Gaps = 8/43 (18%)

Query: 77  PGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGA 119
           PG PG R ARGP         GP G   V G  G  R G  GA
Sbjct: 359 PGPPGPRGARGPQ--------GPSGPPGVPGSPGSSRPGLRGA 393



 Score = 26.9 bits (58), Expect = 4.6
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 8/87 (9%)

Query: 24  PALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGGAWPGSPGWR 83
           P   G RG P  +  D     P  +G P  +  L+L  +  +G  G       PG PG  
Sbjct: 553 PGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGE--KGDQGP------PGDPGSP 604

Query: 84  LARGPAHGASAESLGPLGKALVTGWEG 110
            + GPA  A     GP G+  + G +G
Sbjct: 605 GSPGPAGPAGPPGYGPQGEPGLQGTQG 631



 Score = 26.2 bits (56), Expect = 7.8
 Identities = 30/106 (28%), Positives = 39/106 (36%), Gaps = 24/106 (22%)

Query: 18   PEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGGAWP 77
            P PP TP   G +G P         P PP    P G           RG  G       P
Sbjct: 1360 PGPPGTPGEPGMQGEP-------GPPGPPGNLGPCG----------PRGKPGK---DGKP 1399

Query: 78   GSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGACSPW 123
            G+PG    +G  +  S    GP G   + G +G  + G  G+ + W
Sbjct: 1400 GTPGPAGEKG--NKGSKGEPGPAGSDGLPGLKG--KRGDSGSPATW 1441


>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
           sapiens]
          Length = 1637

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 35/109 (32%), Positives = 45/109 (41%), Gaps = 17/109 (15%)

Query: 21  PPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWG----------RGAGGS 70
           P  P + G +G P   C   PY +P   G P    L  LH   G          +G+ GS
Sbjct: 460 PGIPGVDGPKGEPGLLCTQCPY-IPGPPGLPG---LPGLHGVKGIPGRQGAAGLKGSPGS 515

Query: 71  WSGGAWPGSPGWRLARGP--AHGASAESLGPLGKALVTGWEGGWRGGQG 117
                 PG PG+  A+G     G   E+L P G+  V G + G RG  G
Sbjct: 516 PGNTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPG-DPGLRGQPG 563



 Score = 26.9 bits (58), Expect = 4.6
 Identities = 19/43 (44%), Positives = 19/43 (44%), Gaps = 8/43 (18%)

Query: 77  PGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGA 119
           PG PG R ARGP         GP G   V G  G  R G  GA
Sbjct: 359 PGPPGPRGARGPQ--------GPSGPPGVPGSPGSSRPGLRGA 393



 Score = 26.9 bits (58), Expect = 4.6
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 8/87 (9%)

Query: 24  PALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGGAWPGSPGWR 83
           P   G RG P  +  D     P  +G P  +  L+L  +  +G  G       PG PG  
Sbjct: 553 PGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGE--KGDQGP------PGDPGSP 604

Query: 84  LARGPAHGASAESLGPLGKALVTGWEG 110
            + GPA  A     GP G+  + G +G
Sbjct: 605 GSPGPAGPAGPPGYGPQGEPGLQGTQG 631



 Score = 26.2 bits (56), Expect = 7.8
 Identities = 30/106 (28%), Positives = 39/106 (36%), Gaps = 24/106 (22%)

Query: 18   PEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGGAWP 77
            P PP TP   G +G P         P PP    P G           RG  G       P
Sbjct: 1360 PGPPGTPGEPGMQGEP-------GPPGPPGNLGPCG----------PRGKPGK---DGKP 1399

Query: 78   GSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGACSPW 123
            G+PG    +G  +  S    GP G   + G +G  + G  G+ + W
Sbjct: 1400 GTPGPAGEKG--NKGSKGEPGPAGSDGLPGLKG--KRGDSGSPATW 1441


>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
           sapiens]
          Length = 1670

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 35/109 (32%), Positives = 45/109 (41%), Gaps = 17/109 (15%)

Query: 21  PPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWG----------RGAGGS 70
           P  P + G +G P   C   PY +P   G P    L  LH   G          +G+ GS
Sbjct: 460 PGIPGVDGPKGEPGLLCTQCPY-IPGPPGLPG---LPGLHGVKGIPGRQGAAGLKGSPGS 515

Query: 71  WSGGAWPGSPGWRLARGP--AHGASAESLGPLGKALVTGWEGGWRGGQG 117
                 PG PG+  A+G     G   E+L P G+  V G + G RG  G
Sbjct: 516 PGNTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPG-DPGLRGQPG 563



 Score = 26.9 bits (58), Expect = 4.6
 Identities = 19/43 (44%), Positives = 19/43 (44%), Gaps = 8/43 (18%)

Query: 77  PGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGA 119
           PG PG R ARGP         GP G   V G  G  R G  GA
Sbjct: 359 PGPPGPRGARGPQ--------GPSGPPGVPGSPGSSRPGLRGA 393



 Score = 26.9 bits (58), Expect = 4.6
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 8/87 (9%)

Query: 24  PALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGGAWPGSPGWR 83
           P   G RG P  +  D     P  +G P  +  L+L  +  +G  G       PG PG  
Sbjct: 553 PGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGE--KGDQGP------PGDPGSP 604

Query: 84  LARGPAHGASAESLGPLGKALVTGWEG 110
            + GPA  A     GP G+  + G +G
Sbjct: 605 GSPGPAGPAGPPGYGPQGEPGLQGTQG 631



 Score = 26.2 bits (56), Expect = 7.8
 Identities = 30/106 (28%), Positives = 39/106 (36%), Gaps = 24/106 (22%)

Query: 18   PEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGGAWP 77
            P PP TP   G +G P         P PP    P G           RG  G       P
Sbjct: 1360 PGPPGTPGEPGMQGEP-------GPPGPPGNLGPCG----------PRGKPGK---DGKP 1399

Query: 78   GSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGACSPW 123
            G+PG    +G  +  S    GP G   + G +G  + G  G+ + W
Sbjct: 1400 GTPGPAGEKG--NKGSKGEPGPAGSDGLPGLKG--KRGDSGSPATW 1441


>gi|47825361 non-specific cytotoxic cell receptor protein 1
          homolog [Homo sapiens]
          Length = 275

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 15 SPLPEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGG 69
          SP P PPP P+      P   + P+ P P  PSE   + +LLL    +WG  +GG
Sbjct: 33 SPPPSPPPLPSPPSLPSPAAPEAPELPEPAQPSE-AHARQLLLE---EWGPLSGG 83


>gi|169172231 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 237

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 41/143 (28%), Positives = 49/143 (34%), Gaps = 37/143 (25%)

Query: 11  ALTYSPLPEPPPTPALGG-----------QRGPPTCQCPDF------------------- 40
           ALT   +P PP  P  GG           QRG  T                         
Sbjct: 4   ALTCGGVPSPPSAPGGGGAALAALSARAAQRGSTTFVAASLHRALTLGASSGEGSGRDNN 63

Query: 41  -PYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGGAWP----GSPGWRLARGPAHGASAE 95
            P P PP        +  +     G G G + + G  P    G  GW   RG A GA+  
Sbjct: 64  TPPPPPPRRRRRPPVVAATHRRRLGSGLGLTTTPGLGPRALCGPRGWAAGRGEA-GATGL 122

Query: 96  SLGPLGKALVTGWEGGWRGGQGG 118
            L  +G A V GW GG+  G GG
Sbjct: 123 RLS-VGAATVRGWAGGYFRGDGG 144


>gi|169170975 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 237

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 41/143 (28%), Positives = 49/143 (34%), Gaps = 37/143 (25%)

Query: 11  ALTYSPLPEPPPTPALGG-----------QRGPPTCQCPDF------------------- 40
           ALT   +P PP  P  GG           QRG  T                         
Sbjct: 4   ALTCGGVPSPPSAPGGGGAALAALSARAAQRGSTTFVAASLHRALTLGASSGEGSGRDNN 63

Query: 41  -PYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGGAWP----GSPGWRLARGPAHGASAE 95
            P P PP        +  +     G G G + + G  P    G  GW   RG A GA+  
Sbjct: 64  TPPPPPPRRRRRPPVVAATHRRRLGSGLGLTTTPGLGPRALCGPRGWAAGRGEA-GATGL 122

Query: 96  SLGPLGKALVTGWEGGWRGGQGG 118
            L  +G A V GW GG+  G GG
Sbjct: 123 RLS-VGAATVRGWAGGYFRGDGG 144


>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
          Length = 1669

 Score = 36.6 bits (83), Expect = 0.006
 Identities = 31/105 (29%), Positives = 39/105 (37%), Gaps = 3/105 (2%)

Query: 18  PEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGGAWP 77
           P PP  P L G  GPP    P  P P PP  G P  +  + L +   +G  G       P
Sbjct: 184 PGPPGLPGLQGPVGPPGFTGPPGP-PGPP--GPPGEKGQMGLSFQGPKGDKGDQGVSGPP 240

Query: 78  GSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGACSP 122
           G PG    +     A+    G  G+    G  G    G+ G   P
Sbjct: 241 GVPGQAQVQEKGDFATKGEKGQKGEPGFQGMPGVGEKGEPGKPGP 285



 Score = 26.9 bits (58), Expect = 4.6
 Identities = 37/124 (29%), Positives = 42/124 (33%), Gaps = 23/124 (18%)

Query: 13  TYSPLPEPPPT--PALGGQRGPPTCQCPDFPYPVPPSEGCPS-----------GRLLLSL 59
           T  P  EP P   P L GQ GPP         PVP   G P            G    SL
Sbjct: 351 TPGPRGEPGPKGFPGLPGQPGPP-------GLPVPGQAGAPGFPGERGEKGDRGFPGTSL 403

Query: 60  HWDWGR-GAGGSWSGGAWPGSPGWRLARGPAHGASAESLGPLGKALVTGWEG--GWRGGQ 116
               GR G  G       PG PG+               GP G     G+ G  G +G +
Sbjct: 404 PGPSGRDGLPGPPGSPGPPGQPGYTNGIVECQPGPPGDQGPPGIPGQPGFIGEIGEKGQK 463

Query: 117 GGAC 120
           G +C
Sbjct: 464 GESC 467


>gi|55956899 keratin 9 [Homo sapiens]
          Length = 623

 Score = 36.6 bits (83), Expect = 0.006
 Identities = 22/58 (37%), Positives = 26/58 (44%)

Query: 64  GRGAGGSWSGGAWPGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGACS 121
           G   GG  SGG + G  G R   G ++G  + S G  G     G  GG  GG GG  S
Sbjct: 494 GGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHS 551



 Score = 32.7 bits (73), Expect = 0.083
 Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 64  GRGAGGSWSGGAWPGSPGWRLARGPAHGASA----ESLGPLGKALVTGWEGGWRGGQGGA 119
           G G+GG  SGG + G  G R   G +HG  +    ES G  G        GG  GG  G 
Sbjct: 561 GSGSGGG-SGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK 619

Query: 120 CS 121
            S
Sbjct: 620 SS 621



 Score = 32.3 bits (72), Expect = 0.11
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 58  SLHWDWGRGAGGSWS-----GGAWPGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGW 112
           S  + +G G+GG +S     GG   GS G+  A G  + +S    G  G     G+ GG+
Sbjct: 68  SFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGFGGGFGGGSGGGFGGGY 127

Query: 113 RGGQGG 118
             G GG
Sbjct: 128 GSGFGG 133



 Score = 30.4 bits (67), Expect = 0.41
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 63  WGRGAGGSWSGGAWPGSPGWRLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGA 119
           +G G+GG  SGG+  G  G     G  +G  + S G  G     G   G RGG GG+
Sbjct: 534 YGGGSGGGHSGGSGGGHSG---GSGGNYGGGSGSGGGSGGGY--GGGSGSRGGSGGS 585


>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
          Length = 1489

 Score = 35.4 bits (80), Expect = 0.013
 Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 16  PLPEPPPTPALGGQRGPPTCQCPDFPYPVP-PSEGCPSGRLLLSLHWD-WGRGAGGSWSG 73
           P P+ P  P+   Q    T   P FP P P P++   SG  LLS  WD  GRGAG + +G
Sbjct: 594 PAPQAPQAPSEVPQLVSETWASPLFPAPRPFPAQSSASGSFLLS-GWDPEGRGAGETLAG 652



 Score = 30.4 bits (67), Expect = 0.41
 Identities = 31/116 (26%), Positives = 39/116 (33%), Gaps = 39/116 (33%)

Query: 18  PEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLL--------------------- 56
           P PPP P       PP    P FP+P PP+   P    L                     
Sbjct: 446 PRPPPPP-------PPPRDGP-FPWPWPPAHSAPRPGTLSSPFPLLDGFPGADPDDVLTV 497

Query: 57  ------LSLHWDWGRGAGGSWSGGAWPGSPGWRLARGPAHGASAESLGPLGKALVT 106
                 L+L   W +   G+  GG   G+P W+ A  P     A    P  +AL T
Sbjct: 498 TESSRGLNLECLWEKARRGAGRGG---GAPAWQPASAPP-APHANPSNPFYEALST 549


>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
          Length = 538

 Score = 35.0 bits (79), Expect = 0.017
 Identities = 32/91 (35%), Positives = 35/91 (38%), Gaps = 18/91 (19%)

Query: 16  PLPEPPPTPALGGQRGPPTCQCPDFPYPVPPSEG----CPSGRLLLSLHWDWGRGAGGSW 71
           PLP PP  PA      PP  Q P  P P PP EG           +SL  +  R  GGS 
Sbjct: 210 PLPPPPQPPA------PPQQQQPPPPQPQPPPEGGAVRAGGAARPVSLR-EVVRYLGGS- 261

Query: 72  SGGAWPGSPGWRLARGPAHGASAESLGPLGK 102
                 G  G RL RG   G   E     G+
Sbjct: 262 ------GGAGGRLTRGRVQGLLEEEAAARGR 286



 Score = 27.7 bits (60), Expect = 2.7
 Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 14/40 (35%)

Query: 15  SPLPEPPPTPALGGQRGPPTCQCPDFPYPVPPSEGCPSGR 54
           SP+P PP  PAL G  G P               GCP GR
Sbjct: 427 SPVPLPPGKPALPGADGTPF--------------GCPPGR 452


>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
           sapiens]
          Length = 1751

 Score = 34.7 bits (78), Expect = 0.022
 Identities = 30/83 (36%), Positives = 34/83 (40%), Gaps = 14/83 (16%)

Query: 15  SPLPEPPPTPALGGQRGPPTCQCPDFPYPV-PPSEGCPSGRLLLSLHWDWGRGAGGSWSG 73
           S +P P   P + G+ GPP    P  P P  PP    P GR           G  GS   
Sbjct: 928 SDVPGPAGLPGVPGREGPP--GFPGLPGPPGPPGREGPPGR----------TGQKGSLGE 975

Query: 74  GAWPGSPGWRLARGPAHGASAES 96
              PG  G + A GPA GA  ES
Sbjct: 976 AGAPGHKGSKGAPGPA-GARGES 997



 Score = 26.2 bits (56), Expect = 7.8
 Identities = 41/137 (29%), Positives = 47/137 (34%), Gaps = 25/137 (18%)

Query: 15   SPLPEPPPTPALGGQRGP-----------PTCQCP-DFPYPVPPSEGCPSGRLLLSLHWD 62
            S  P PP  P   G  GP           P  Q P DF       +G    R       +
Sbjct: 1279 SSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGE 1338

Query: 63   WGRGAGGSWSGGAWPGSPGWRLARG--PAHGASAESL----GPLGKALVTGWEGGWRGGQ 116
             G   GG + G + PG PG    RG     G   ES+    GP G     G   G+ G Q
Sbjct: 1339 RGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGI--GYEGRQ 1396

Query: 117  G-----GACSPWYFPIP 128
            G     G   P  FP P
Sbjct: 1397 GPPGPPGPPGPPSFPGP 1413


>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
           sapiens]
          Length = 1336

 Score = 34.7 bits (78), Expect = 0.022
 Identities = 30/83 (36%), Positives = 34/83 (40%), Gaps = 14/83 (16%)

Query: 15  SPLPEPPPTPALGGQRGPPTCQCPDFPYPV-PPSEGCPSGRLLLSLHWDWGRGAGGSWSG 73
           S +P P   P + G+ GPP    P  P P  PP    P GR           G  GS   
Sbjct: 513 SDVPGPAGLPGVPGREGPP--GFPGLPGPPGPPGREGPPGR----------TGQKGSLGE 560

Query: 74  GAWPGSPGWRLARGPAHGASAES 96
              PG  G + A GPA GA  ES
Sbjct: 561 AGAPGHKGSKGAPGPA-GARGES 582



 Score = 26.2 bits (56), Expect = 7.8
 Identities = 41/137 (29%), Positives = 47/137 (34%), Gaps = 25/137 (18%)

Query: 15  SPLPEPPPTPALGGQRGP-----------PTCQCP-DFPYPVPPSEGCPSGRLLLSLHWD 62
           S  P PP  P   G  GP           P  Q P DF       +G    R       +
Sbjct: 864 SSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGE 923

Query: 63  WGRGAGGSWSGGAWPGSPGWRLARG--PAHGASAESL----GPLGKALVTGWEGGWRGGQ 116
            G   GG + G + PG PG    RG     G   ES+    GP G     G   G+ G Q
Sbjct: 924 RGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGI--GYEGRQ 981

Query: 117 G-----GACSPWYFPIP 128
           G     G   P  FP P
Sbjct: 982 GPPGPPGPPGPPSFPGP 998


>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
           sapiens]
          Length = 1516

 Score = 34.7 bits (78), Expect = 0.022
 Identities = 30/83 (36%), Positives = 34/83 (40%), Gaps = 14/83 (16%)

Query: 15  SPLPEPPPTPALGGQRGPPTCQCPDFPYPV-PPSEGCPSGRLLLSLHWDWGRGAGGSWSG 73
           S +P P   P + G+ GPP    P  P P  PP    P GR           G  GS   
Sbjct: 693 SDVPGPAGLPGVPGREGPP--GFPGLPGPPGPPGREGPPGR----------TGQKGSLGE 740

Query: 74  GAWPGSPGWRLARGPAHGASAES 96
              PG  G + A GPA GA  ES
Sbjct: 741 AGAPGHKGSKGAPGPA-GARGES 762



 Score = 26.2 bits (56), Expect = 7.8
 Identities = 41/137 (29%), Positives = 47/137 (34%), Gaps = 25/137 (18%)

Query: 15   SPLPEPPPTPALGGQRGP-----------PTCQCP-DFPYPVPPSEGCPSGRLLLSLHWD 62
            S  P PP  P   G  GP           P  Q P DF       +G    R       +
Sbjct: 1044 SSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGE 1103

Query: 63   WGRGAGGSWSGGAWPGSPGWRLARG--PAHGASAESL----GPLGKALVTGWEGGWRGGQ 116
             G   GG + G + PG PG    RG     G   ES+    GP G     G   G+ G Q
Sbjct: 1104 RGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGI--GYEGRQ 1161

Query: 117  G-----GACSPWYFPIP 128
            G     G   P  FP P
Sbjct: 1162 GPPGPPGPPGPPSFPGP 1178


>gi|153791535 general control of amino acid synthesis 5-like 2 [Homo
           sapiens]
          Length = 837

 Score = 34.7 bits (78), Expect = 0.022
 Identities = 35/116 (30%), Positives = 42/116 (36%), Gaps = 10/116 (8%)

Query: 15  SPLPEPPPTPALGGQRGP-PTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSG 73
           SP P P PTPA      P PT      P P P     P+G          G G+GG+ SG
Sbjct: 21  SPAPAPTPTPAPSPASAPIPT----PTPAPAPAPAAAPAGSTGTG---GPGVGSGGAGSG 73

Query: 74  GAWPGSPGW-RLARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGACSPWYFPIP 128
           G  P  PG  +  R     A    L    K    G     +  +   C+ W  P P
Sbjct: 74  GD-PARPGLSQQQRASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPKP 128


>gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens]
          Length = 483

 Score = 34.7 bits (78), Expect = 0.022
 Identities = 30/79 (37%), Positives = 34/79 (43%), Gaps = 10/79 (12%)

Query: 46  PSEGCP--SGRLLLSLHWDWGRGAGGSWSGGAWPGSPGWRLARGPAH-GASAESLGPLGK 102
           PS G P  SGR   S   + G G GG   GG  PG      A GP   G    S+G +G 
Sbjct: 6   PSGGGPGGSGRARTSSFAEPGGGGGG---GGGGPGGS----ASGPGGTGGGKASVGAMGG 58

Query: 103 ALVTGWEGGWRGGQGGACS 121
            +     GG  GG GG  S
Sbjct: 59  GVGASSSGGGPGGSGGGGS 77


>gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor [Homo
            sapiens]
          Length = 1336

 Score = 34.7 bits (78), Expect = 0.022
 Identities = 28/81 (34%), Positives = 31/81 (38%), Gaps = 17/81 (20%)

Query: 39   DFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGGAWPGSPGWRLARGPA-----HGAS 93
            DFPYP     G P GR        W     G W  G+W   P      GPA     H AS
Sbjct: 1136 DFPYPYAERLGPPPGRY-------WSVDKLGGWRAGSWDYLPP---RSGPAAWHCRHCAS 1185

Query: 94   AESLGPLGKALVT--GWEGGW 112
             E L P      +  G +GGW
Sbjct: 1186 LELLPPPRHLSCSHDGLDGGW 1206


>gi|118572599 formin homology 2 domain containing 1 [Homo sapiens]
          Length = 1164

 Score = 34.7 bits (78), Expect = 0.022
 Identities = 26/85 (30%), Positives = 30/85 (35%), Gaps = 21/85 (24%)

Query: 16  PLPEPPPTPALGGQRGPPTCQ-CPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGG 74
           P P PPP P  G    PP        P+ VP S   P+ R  + L W   + AGG     
Sbjct: 585 PPPLPPPPPIKGPFPPPPPLPLAAPLPHSVPDSSALPTKRKTVKLFWRELKLAGG----- 639

Query: 75  AWPGSPGWRLARGPAHGASAESLGP 99
                          HG SA   GP
Sbjct: 640 ---------------HGVSASRFGP 649


>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
           [Homo sapiens]
          Length = 2191

 Score = 34.7 bits (78), Expect = 0.022
 Identities = 28/96 (29%), Positives = 32/96 (33%), Gaps = 16/96 (16%)

Query: 24  PALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGGAWPGSPGWR 83
           P      G P  QC  +P    P  G   G          G G GG   GG   G  G  
Sbjct: 224 PLQNSHEGYPNSQCNHYPGYSRPGAGGGGGG---------GGGGGGGSGGGGGGGGAG-- 272

Query: 84  LARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGA 119
                A GA A ++     A      GG  GG GG+
Sbjct: 273 -----AGGAGAGAVAAAAAAAAAAAGGGGGGGYGGS 303


>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
           [Homo sapiens]
          Length = 2231

 Score = 34.7 bits (78), Expect = 0.022
 Identities = 28/96 (29%), Positives = 32/96 (33%), Gaps = 16/96 (16%)

Query: 24  PALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGGAWPGSPGWR 83
           P      G P  QC  +P    P  G   G          G G GG   GG   G  G  
Sbjct: 224 PLQNSHEGYPNSQCNHYPGYSRPGAGGGGGG---------GGGGGGGSGGGGGGGGAG-- 272

Query: 84  LARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGA 119
                A GA A ++     A      GG  GG GG+
Sbjct: 273 -----AGGAGAGAVAAAAAAAAAAAGGGGGGGYGGS 303


>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
           [Homo sapiens]
          Length = 2178

 Score = 34.7 bits (78), Expect = 0.022
 Identities = 28/96 (29%), Positives = 32/96 (33%), Gaps = 16/96 (16%)

Query: 24  PALGGQRGPPTCQCPDFPYPVPPSEGCPSGRLLLSLHWDWGRGAGGSWSGGAWPGSPGWR 83
           P      G P  QC  +P    P  G   G          G G GG   GG   G  G  
Sbjct: 224 PLQNSHEGYPNSQCNHYPGYSRPGAGGGGGG---------GGGGGGGSGGGGGGGGAG-- 272

Query: 84  LARGPAHGASAESLGPLGKALVTGWEGGWRGGQGGA 119
                A GA A ++     A      GG  GG GG+
Sbjct: 273 -----AGGAGAGAVAAAAAAAAAAAGGGGGGGYGGS 303


>gi|171543895 ataxin 2 [Homo sapiens]
          Length = 1313

 Score = 34.3 bits (77), Expect = 0.029
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 6/41 (14%)

Query: 15  SPLPEPPPTPALGGQRGP------PTCQCPDFPYPVPPSEG 49
           SP P+  P+P++ G + P      P C  P+  YPVP S G
Sbjct: 937 SPRPQAQPSPSMVGHQQPTPVYTQPVCFAPNMMYPVPVSPG 977


>gi|91208423 thyroid receptor-interacting protein 6 [Homo sapiens]
          Length = 476

 Score = 34.3 bits (77), Expect = 0.029
 Identities = 36/129 (27%), Positives = 46/129 (35%), Gaps = 30/129 (23%)

Query: 18  PEPPPTPALGGQRGPPTCQCPDFPY--PVPPS---EGCPSG-------RLLLSLHWDWGR 65
           P PPP    G  +  P    P  PY  P P S      P+G       ++   +      
Sbjct: 125 PPPPPAYRTGSLKPNPASPLPASPYGGPTPASYTTASTPAGPAFPVQVKVAQPVRGCGPP 184

Query: 66  GAGGSWSGGAWPG------------SPGWRLARGPAHGASAESLGPLGKALVTGWEGGWR 113
             G S + G  PG             PG+R  R P  GA  E+ G      V+G  G  R
Sbjct: 185 RRGASQASGPLPGPHFPLPGRGEVWGPGYRSQREPGPGAKEEAAG------VSGPAGRGR 238

Query: 114 GGQGGACSP 122
           GG+ G   P
Sbjct: 239 GGEHGPQVP 247


>gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo
           sapiens]
          Length = 459

 Score = 33.9 bits (76), Expect = 0.037
 Identities = 37/116 (31%), Positives = 47/116 (40%), Gaps = 19/116 (16%)

Query: 19  EPPPTPALGGQRG---PPTCQCPDFP-YPVPPSEG-----CPSGRLLLSLHWDWGRGAGG 69
           +PPP       R    P   + PDF   P  P E       P G+++L L +  GRG  G
Sbjct: 267 KPPPQVLTAEPREDATPGEGRLPDFEKQPHSPRERLDPPPAPFGQMILILGFRVGRGGTG 326

Query: 70  SWSGGAWPGSPGWRLARGPAHGASAESLGPLGKAL-----VTGWEGG--WRGGQGG 118
           SWS   W    G     G +    A+ L   GK+      + G  GG   RGG GG
Sbjct: 327 SWS---WRRGAGSAELPGCSCAQLAQQLARAGKSTESRNRLNGRRGGVEARGGGGG 379


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.142    0.521 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,525,598
Number of Sequences: 37866
Number of extensions: 593944
Number of successful extensions: 4497
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 446
Number of HSP's that attempted gapping in prelim test: 3434
Number of HSP's gapped (non-prelim): 1405
length of query: 131
length of database: 18,247,518
effective HSP length: 91
effective length of query: 40
effective length of database: 14,801,712
effective search space: 592068480
effective search space used: 592068480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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