Guide to the Human Genome
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Name: LOC100131831 Sequence: fasta or formatted (131aa) NCBI GI: 169213725
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {131aa} PREDICTED: hypothetical protein
alt mRNA {131aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         12           2
 C cysteine            3.1          4           1
 D aspartate           2.3          3           1
 E glutamate           3.1          4           1
 F phenylalanine       2.3          3           1
 G glycine            18.3         24           2
 H histidine           1.5          2           1
 I isoleucine          1.5          2           1
 K lysine              0.8          1           1
 L leucine             9.9         13           3
 M methionine          0.8          1           1
 N asparagine          0.0          0           0
 P proline            16.8         22           3
 Q glutamine           2.3          3           1
 R arginine            4.6          6           1
 S serine              9.2         12           1
 T threonine           3.8          5           1
 V valine              2.3          3           1
 W tryptophan          6.1          8           1
 Y tyrosine            2.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131831          1.000   PREDICTED: hypothetical protein 
LOC100131831          1.000   PREDICTED: hypothetical protein 
EOMES                 0.051   eomesodermin 
ONECUT3               0.051   one cut homeobox 3 
GJD3                  0.048   gap junction protein, delta 3, 31.9kDa 
COL4A3                0.044   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.044   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.044   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.044   alpha 3 type IV collagen isoform 1 precursor 
NCCRP1                0.044   non-specific cytotoxic cell receptor protein 1 homol...
LOC100128370          0.044   PREDICTED: hypothetical protein 
LOC100128370          0.044   PREDICTED: hypothetical protein 
COL4A1                0.044   alpha 1 type IV collagen preproprotein 
KRT9                  0.044   keratin 9 
LMTK3                 0.037   lemur tyrosine kinase 3 
SAMD1                 0.037   sterile alpha motif domain containing 1 
COL18A1               0.037   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.037   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.037   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
KAT2A                 0.037   general control of amino acid synthesis 5-like 2 [H...
GSK3A                 0.037   glycogen synthase kinase 3 alpha 
GRIN2D                0.037   N-methyl-D-aspartate receptor subunit 2D precursor ...
FHOD1                 0.037   formin homology 2 domain containing 1 
ARID1B                0.037   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.037   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.037   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
ATXN2                 0.033   ataxin 2 
TRIP6                 0.033   thyroid receptor-interacting protein 6 
LOC100292122          0.033   PREDICTED: hypothetical protein XP_002345138 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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