BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|169213314 PREDICTED: hypothetical protein [Homo sapiens] (277 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|169213977 PREDICTED: hypothetical protein [Homo sapiens] 600 e-172 gi|169214385 PREDICTED: hypothetical protein [Homo sapiens] 600 e-172 gi|169213314 PREDICTED: hypothetical protein [Homo sapiens] 600 e-172 gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 42 6e-04 gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo... 41 0.001 gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001 gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001 gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001 gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 40 0.002 gi|169167813 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002 gi|169167899 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002 gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H... 40 0.002 gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho... 40 0.002 gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom... 40 0.002 gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 40 0.002 gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 40 0.002 gi|139394604 bromo adjacent homology domain containing 1 [Homo s... 40 0.002 gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 40 0.003 gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s... 40 0.003 gi|13994253 Golgi reassembly stacking protein 1 [Homo sapiens] 40 0.003 gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 39 0.004 gi|169169586 PREDICTED: hypothetical protein [Homo sapiens] 39 0.005 gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 39 0.007 gi|169209217 PREDICTED: similar to hCG2042704 [Homo sapiens] 39 0.007 gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens] 39 0.007 gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 39 0.007 gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 39 0.007 gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 39 0.007 gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens] 39 0.007 gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens] 39 0.007 >gi|169213977 PREDICTED: hypothetical protein [Homo sapiens] Length = 277 Score = 600 bits (1547), Expect = e-172 Identities = 277/277 (100%), Positives = 277/277 (100%) Query: 1 MGRRGFAELGRAQTTARGRYNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRGETHK 60 MGRRGFAELGRAQTTARGRYNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRGETHK Sbjct: 1 MGRRGFAELGRAQTTARGRYNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRGETHK 60 Query: 61 SRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC 120 SRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC Sbjct: 61 SRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC 120 Query: 121 RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP 180 RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP Sbjct: 121 RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP 180 Query: 181 YAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARLPGFLP 240 YAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARLPGFLP Sbjct: 181 YAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARLPGFLP 240 Query: 241 DCWGVSLAPHHVRWCAEVRVCAGEGPLLGLLDCKEQV 277 DCWGVSLAPHHVRWCAEVRVCAGEGPLLGLLDCKEQV Sbjct: 241 DCWGVSLAPHHVRWCAEVRVCAGEGPLLGLLDCKEQV 277 >gi|169214385 PREDICTED: hypothetical protein [Homo sapiens] Length = 277 Score = 600 bits (1547), Expect = e-172 Identities = 277/277 (100%), Positives = 277/277 (100%) Query: 1 MGRRGFAELGRAQTTARGRYNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRGETHK 60 MGRRGFAELGRAQTTARGRYNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRGETHK Sbjct: 1 MGRRGFAELGRAQTTARGRYNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRGETHK 60 Query: 61 SRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC 120 SRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC Sbjct: 61 SRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC 120 Query: 121 RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP 180 RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP Sbjct: 121 RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP 180 Query: 181 YAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARLPGFLP 240 YAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARLPGFLP Sbjct: 181 YAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARLPGFLP 240 Query: 241 DCWGVSLAPHHVRWCAEVRVCAGEGPLLGLLDCKEQV 277 DCWGVSLAPHHVRWCAEVRVCAGEGPLLGLLDCKEQV Sbjct: 241 DCWGVSLAPHHVRWCAEVRVCAGEGPLLGLLDCKEQV 277 >gi|169213314 PREDICTED: hypothetical protein [Homo sapiens] Length = 277 Score = 600 bits (1547), Expect = e-172 Identities = 277/277 (100%), Positives = 277/277 (100%) Query: 1 MGRRGFAELGRAQTTARGRYNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRGETHK 60 MGRRGFAELGRAQTTARGRYNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRGETHK Sbjct: 1 MGRRGFAELGRAQTTARGRYNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRGETHK 60 Query: 61 SRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC 120 SRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC Sbjct: 61 SRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC 120 Query: 121 RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP 180 RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP Sbjct: 121 RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP 180 Query: 181 YAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARLPGFLP 240 YAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARLPGFLP Sbjct: 181 YAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARLPGFLP 240 Query: 241 DCWGVSLAPHHVRWCAEVRVCAGEGPLLGLLDCKEQV 277 DCWGVSLAPHHVRWCAEVRVCAGEGPLLGLLDCKEQV Sbjct: 241 DCWGVSLAPHHVRWCAEVRVCAGEGPLLGLLDCKEQV 277 >gi|158854042 hypothetical protein LOC222183 [Homo sapiens] Length = 653 Score = 42.0 bits (97), Expect = 6e-04 Identities = 56/191 (29%), Positives = 72/191 (37%), Gaps = 38/191 (19%) Query: 36 QAWGGGGEAGAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSP- 94 Q GG GA +R RR + RSR ++ R P P P G+ RSLS Sbjct: 373 QGRGGRAAGGAGRR----RRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSS--RSLSRA 426 Query: 95 ---------RPVPGSEPSTGTRVGRQGHGERSRRCRCCLGDAASPWAQSLPYTQVQGGRG 145 R PG P G+ G GHG+R++ A P A + P G RG Sbjct: 427 RSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKE----RPPRARP-ASTSPSPGAHGRRG 481 Query: 146 FLPE------EVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPE 199 PE GPH R + + + SR P++ SR P+ K P Sbjct: 482 G-PEGKSSSRSPGPHPRSWSSSRS----PSKSRSRSAEKRPHS-PSRSPSPKK-----PL 530 Query: 200 GGDGDPEGNRR 210 D D EG R Sbjct: 531 SRDKDGEGRAR 541 Score = 36.2 bits (82), Expect = 0.032 Identities = 66/252 (26%), Positives = 82/252 (32%), Gaps = 81/252 (32%) Query: 33 WGR-QAWGGGGE-AGAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAGAGVP- 89 WG Q GG G+ +GAH G R G H + P++ SP A A P Sbjct: 308 WGSPQRNGGSGQRSGAH----GGRPGSAHSPPDK--------PSSPSPRVRDKAAAAAPT 355 Query: 90 ------RSLSPRPVPGSEPSTGTRVGRQGHGERSRRCRCCLGDAASPWAQSLPYTQVQGG 143 S SPR P S+ G G G R RR R +AS Sbjct: 356 PPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSAS-------------- 401 Query: 144 RGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEG--- 200 P +RG RR P PP G SR +R + + G Sbjct: 402 --------APRRRG--------------RRRPRPAPP-RGSSRSLSRARSSSDSGSGRGA 438 Query: 201 -GDGDPE----------GNRRLRPPPLSRRCFRS--------GGAAVFTTTARLPGFLPD 241 G G PE G R PP +R S G +++R PG P Sbjct: 439 PGPG-PEPGSERGHGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPR 497 Query: 242 CWGVSLAPHHVR 253 W S +P R Sbjct: 498 SWSSSRSPSKSR 509 Score = 28.1 bits (61), Expect = 8.8 Identities = 40/154 (25%), Positives = 50/154 (32%), Gaps = 20/154 (12%) Query: 52 GTRRGETHKSRSRDGSTGRGGPNARSPHPLGP--------AGAGVPRSLSPRPVPGSEPS 103 G+RR H+SRS + PH P +G+ SLS PS Sbjct: 217 GSRRKRRHRSRSSKCKRKEKNKEKKRPHTESPGRRSHRHSSGSSHSPSLSSHYSDSRSPS 276 Query: 104 ----TGTRVGRQGHGERSRRCRCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQE 159 GR+ +RS R S W Q GG G + G H G+ Sbjct: 277 RLSPKHRDEGRKTGSQRSSGSRSPSPSGGSGWGS----PQRNGGSG---QRSGAH-GGRP 328 Query: 160 GAGTGWGDATLSRRNCTPTPPYAGGSREPARGKE 193 G+ D S A PARGKE Sbjct: 329 GSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKE 362 >gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo sapiens] Length = 3312 Score = 41.2 bits (95), Expect = 0.001 Identities = 47/183 (25%), Positives = 60/183 (32%), Gaps = 32/183 (17%) Query: 45 GAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVP------ 98 G+ +R G G R S GR GP R G +GVP S + P+P Sbjct: 119 GSRERETGQGPGSVLYWRPEVSSCGRTGPLQRGSLSPGALSSGVPGSGNSSPLPSDFLIR 178 Query: 99 --GSEPSTGTRVGRQGHGERSRRCRCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQR 156 G +P + R G +R RCC WA G+G Sbjct: 179 HHGPKPVSSQRNAGTGSRKRVGTARCC----GELWATG------SKGQG----------- 217 Query: 157 GQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPL 216 E A T + T RRNC P +G + A + P G E P P Sbjct: 218 --ERATTSGAERTAPRRNCLPGASGSGPELDSA-PRTARTAPASGSAPRESRTAPEPAPK 274 Query: 217 SRR 219 R Sbjct: 275 RMR 277 >gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] Length = 426 Score = 40.8 bits (94), Expect = 0.001 Identities = 43/150 (28%), Positives = 52/150 (34%), Gaps = 19/150 (12%) Query: 40 GGGEAGAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAG---AGVPRSLSPRP 96 GG GA +R R GE + R R G P P P GPA AG R+ Sbjct: 240 GGEVVGARRR----RGGEERRVRGRRQGCALGSP----PIPAGPAAPGRAGERRAARQWR 291 Query: 97 VPGSEPSTGTRVGRQGHG------ERSRRCRCCLGDAASPWAQSLPYTQV--QGGRGFLP 148 G P R G QG G R+R CL + + W PY + G R P Sbjct: 292 KRGGGPGVSPREGAQGEGVRGGVTPRARGSSTCLRPSPATWQGGAPYRAIFAAGPRLSAP 351 Query: 149 EEVGPHQRGQEGAGTGWGDATLSRRNCTPT 178 G A + SRR P+ Sbjct: 352 SAEAEEVPGGHTASNPTYEPLSSRRTKAPS 381 >gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] Length = 520 Score = 40.8 bits (94), Expect = 0.001 Identities = 43/150 (28%), Positives = 52/150 (34%), Gaps = 19/150 (12%) Query: 40 GGGEAGAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAG---AGVPRSLSPRP 96 GG GA +R R GE + R R G P P P GPA AG R+ Sbjct: 334 GGEVVGARRR----RGGEERRVRGRRQGCALGSP----PIPAGPAAPGRAGERRAARQWR 385 Query: 97 VPGSEPSTGTRVGRQGHG------ERSRRCRCCLGDAASPWAQSLPYTQV--QGGRGFLP 148 G P R G QG G R+R CL + + W PY + G R P Sbjct: 386 KRGGGPGVSPREGAQGEGVRGGVTPRARGSSTCLRPSPATWQGGAPYRAIFAAGPRLSAP 445 Query: 149 EEVGPHQRGQEGAGTGWGDATLSRRNCTPT 178 G A + SRR P+ Sbjct: 446 SAEAEEVPGGHTASNPTYEPLSSRRTKAPS 475 >gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] Length = 520 Score = 40.8 bits (94), Expect = 0.001 Identities = 43/150 (28%), Positives = 52/150 (34%), Gaps = 19/150 (12%) Query: 40 GGGEAGAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAG---AGVPRSLSPRP 96 GG GA +R R GE + R R G P P P GPA AG R+ Sbjct: 334 GGEVVGARRR----RGGEERRVRGRRQGCALGSP----PIPAGPAAPGRAGERRAARQWR 385 Query: 97 VPGSEPSTGTRVGRQGHG------ERSRRCRCCLGDAASPWAQSLPYTQV--QGGRGFLP 148 G P R G QG G R+R CL + + W PY + G R P Sbjct: 386 KRGGGPGVSPREGAQGEGVRGGVTPRARGSSTCLRPSPATWQGGAPYRAIFAAGPRLSAP 445 Query: 149 EEVGPHQRGQEGAGTGWGDATLSRRNCTPT 178 G A + SRR P+ Sbjct: 446 SAEAEEVPGGHTASNPTYEPLSSRRTKAPS 475 >gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] Length = 1192 Score = 40.4 bits (93), Expect = 0.002 Identities = 49/184 (26%), Positives = 64/184 (34%), Gaps = 30/184 (16%) Query: 73 PNARSPHPLGPAGAGVPRSLSPRPVPGSEP-------------STGTRVGRQGHGERSRR 119 P+ P P G AG G+P S SP P GS T T G + G + Sbjct: 148 PSWGGPEPEGRAGGGIPGSSSPHPGTGSRRLKVAPPPPAPKPCKTVTTSGAKAGGGKGAG 207 Query: 120 CRCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTP 179 R W +S +V+G + A G G +T S Sbjct: 208 SRL-------SWPESEGKPRVKGSKSSAGTGASV-SAAATAAAAGGGGSTASTSGGVGAG 259 Query: 180 PYAGGSREPARGKEGVWTPEGGD---GDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARLP 236 A G P +GK T + D G P G+ PPPL+ S AV +A+ P Sbjct: 260 AGARGKLSPRKGKSK--TLDNSDLHPGPPAGS----PPPLTLPPTPSPATAVTAASAQPP 313 Query: 237 GFLP 240 G P Sbjct: 314 GPAP 317 >gi|169167813 PREDICTED: hypothetical protein [Homo sapiens] Length = 260 Score = 40.4 bits (93), Expect = 0.002 Identities = 46/152 (30%), Positives = 56/152 (36%), Gaps = 31/152 (20%) Query: 73 PNARSPHPLGP-------------AGAGVPRSLSPR-PVPGSEPSTGTRVGRQGHGERSR 118 P++RSP P+ P AGA + PR P PGS P G R+ H S Sbjct: 68 PDSRSPTPVPPSFASDQRARVRVCAGANGAGASGPRGPSPGSPPPPGLSSSRRRHRHCSS 127 Query: 119 RCRCC------LGDAASPW---AQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDAT 169 RC C L PW A L Q GG E G + G+E G G Sbjct: 128 RCCRCRRRRRSLALLLFPWLRPAWQLAGCQAWGG------ERGRGETGREDGRAGVGKG- 180 Query: 170 LSRRNCTPTPPYAGGSREPARGKEGVWTPEGG 201 R+ TP A +P EG +GG Sbjct: 181 -GHRSPGVTPRLARSPPDPGCRSEGEADVQGG 211 >gi|169167899 PREDICTED: hypothetical protein [Homo sapiens] Length = 260 Score = 40.4 bits (93), Expect = 0.002 Identities = 46/152 (30%), Positives = 56/152 (36%), Gaps = 31/152 (20%) Query: 73 PNARSPHPLGP-------------AGAGVPRSLSPR-PVPGSEPSTGTRVGRQGHGERSR 118 P++RSP P+ P AGA + PR P PGS P G R+ H S Sbjct: 68 PDSRSPTPVPPSFASDQRARVRVCAGANGAGASGPRGPSPGSPPPPGLSSSRRRHRHCSS 127 Query: 119 RCRCC------LGDAASPW---AQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDAT 169 RC C L PW A L Q GG E G + G+E G G Sbjct: 128 RCCRCRRRRRSLALLLFPWLRPAWQLAGCQAWGG------ERGRGETGREDGRAGVGKG- 180 Query: 170 LSRRNCTPTPPYAGGSREPARGKEGVWTPEGG 201 R+ TP A +P EG +GG Sbjct: 181 -GHRSPGVTPRLARSPPDPGCRSEGEADVQGG 211 >gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo sapiens] Length = 828 Score = 40.4 bits (93), Expect = 0.002 Identities = 55/168 (32%), Positives = 64/168 (38%), Gaps = 24/168 (14%) Query: 54 RRGE--THKSRSRDGSTG-RGGPNARSPHPL----GPAGAGVPRSL-SPRPVPGSEPSTG 105 RRG+ T S DG G +G P P L G GA R L PR G+ G Sbjct: 425 RRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPG 484 Query: 106 TRVGRQGHGERSRRCRCCLGDAASPWAQS---LPYTQVQGGRGFLPEEVGPHQRGQEGAG 162 + R G+ R GD+ P + P G RG E+ P RG EG Sbjct: 485 KQGSRGDPGDAGPR-----GDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEG-- 537 Query: 163 TGWGDATLS----RRNCTPTPPYAGGSREPA-RGKEGVWTPEGGDGDP 205 G GD L R+ P G EP RG GV PEG G P Sbjct: 538 -GRGDFGLKGEPGRKGEKGEPADPGPPGEPGPRGPRGVPGPEGEPGPP 584 Score = 32.3 bits (72), Expect = 0.47 Identities = 47/179 (26%), Positives = 60/179 (33%), Gaps = 36/179 (20%) Query: 39 GGGGEAGAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVP 98 G GE GA R + + + G GR GP P G P + P P Sbjct: 307 GEKGEFGADGRKGAPGLAGKNGTDGQKGKLGRIGP---------PGCKGDPGNRGPDGYP 357 Query: 99 GSEPSTGTRVGRQGHGERSRRCRCCLGDAASPWAQSLP-YTQVQGGRGFLPEEVGPHQRG 157 G S G R + G G+ R P + P +G +G+ P G Sbjct: 358 GEAGSPGERGDQGGKGDPGR-----------PGRRGPPGEIGAKGSKGYQGNSGAPGSPG 406 Query: 158 QEGAGTGWGDATLSRRNCTPTPPYAGGSRE---PARGKEGVWTPEG--GDGDPEGNRRL 211 +GA G G P P R +G G P+G GD PEG R L Sbjct: 407 VKGAKGGPG----------PRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGL 455 >gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo sapiens] Length = 918 Score = 40.4 bits (93), Expect = 0.002 Identities = 55/168 (32%), Positives = 64/168 (38%), Gaps = 24/168 (14%) Query: 54 RRGE--THKSRSRDGSTG-RGGPNARSPHPL----GPAGAGVPRSL-SPRPVPGSEPSTG 105 RRG+ T S DG G +G P P L G GA R L PR G+ G Sbjct: 425 RRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPG 484 Query: 106 TRVGRQGHGERSRRCRCCLGDAASPWAQS---LPYTQVQGGRGFLPEEVGPHQRGQEGAG 162 + R G+ R GD+ P + P G RG E+ P RG EG Sbjct: 485 KQGSRGDPGDAGPR-----GDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEG-- 537 Query: 163 TGWGDATLS----RRNCTPTPPYAGGSREPA-RGKEGVWTPEGGDGDP 205 G GD L R+ P G EP RG GV PEG G P Sbjct: 538 -GRGDFGLKGEPGRKGEKGEPADPGPPGEPGPRGPRGVPGPEGEPGPP 584 Score = 32.3 bits (72), Expect = 0.47 Identities = 47/179 (26%), Positives = 60/179 (33%), Gaps = 36/179 (20%) Query: 39 GGGGEAGAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVP 98 G GE GA R + + + G GR GP P G P + P P Sbjct: 307 GEKGEFGADGRKGAPGLAGKNGTDGQKGKLGRIGP---------PGCKGDPGNRGPDGYP 357 Query: 99 GSEPSTGTRVGRQGHGERSRRCRCCLGDAASPWAQSLP-YTQVQGGRGFLPEEVGPHQRG 157 G S G R + G G+ R P + P +G +G+ P G Sbjct: 358 GEAGSPGERGDQGGKGDPGR-----------PGRRGPPGEIGAKGSKGYQGNSGAPGSPG 406 Query: 158 QEGAGTGWGDATLSRRNCTPTPPYAGGSRE---PARGKEGVWTPEG--GDGDPEGNRRL 211 +GA G G P P R +G G P+G GD PEG R L Sbjct: 407 VKGAKGGPG----------PRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGL 455 >gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo sapiens] Length = 1019 Score = 40.4 bits (93), Expect = 0.002 Identities = 55/168 (32%), Positives = 64/168 (38%), Gaps = 24/168 (14%) Query: 54 RRGE--THKSRSRDGSTG-RGGPNARSPHPL----GPAGAGVPRSL-SPRPVPGSEPSTG 105 RRG+ T S DG G +G P P L G GA R L PR G+ G Sbjct: 425 RRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPG 484 Query: 106 TRVGRQGHGERSRRCRCCLGDAASPWAQS---LPYTQVQGGRGFLPEEVGPHQRGQEGAG 162 + R G+ R GD+ P + P G RG E+ P RG EG Sbjct: 485 KQGSRGDPGDAGPR-----GDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEG-- 537 Query: 163 TGWGDATLS----RRNCTPTPPYAGGSREPA-RGKEGVWTPEGGDGDP 205 G GD L R+ P G EP RG GV PEG G P Sbjct: 538 -GRGDFGLKGEPGRKGEKGEPADPGPPGEPGPRGPRGVPGPEGEPGPP 584 Score = 32.3 bits (72), Expect = 0.47 Identities = 47/179 (26%), Positives = 60/179 (33%), Gaps = 36/179 (20%) Query: 39 GGGGEAGAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVP 98 G GE GA R + + + G GR GP P G P + P P Sbjct: 307 GEKGEFGADGRKGAPGLAGKNGTDGQKGKLGRIGP---------PGCKGDPGNRGPDGYP 357 Query: 99 GSEPSTGTRVGRQGHGERSRRCRCCLGDAASPWAQSLP-YTQVQGGRGFLPEEVGPHQRG 157 G S G R + G G+ R P + P +G +G+ P G Sbjct: 358 GEAGSPGERGDQGGKGDPGR-----------PGRRGPPGEIGAKGSKGYQGNSGAPGSPG 406 Query: 158 QEGAGTGWGDATLSRRNCTPTPPYAGGSRE---PARGKEGVWTPEG--GDGDPEGNRRL 211 +GA G G P P R +G G P+G GD PEG R L Sbjct: 407 VKGAKGGPG----------PRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGL 455 >gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] Length = 2285 Score = 40.4 bits (93), Expect = 0.002 Identities = 40/138 (28%), Positives = 54/138 (39%), Gaps = 19/138 (13%) Query: 36 QAWGGGGEAGAHQRICGTRRGETHKSRSRDGSTGRGG-PNARSPHPLGPAGAGVPRSLSP 94 Q WG A A G + +H + GS+G GG P AR+P P P + P Sbjct: 335 QCWGAAAAAAAAAAASGGAQQRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQ--MGKMRP 392 Query: 95 RPVPGSEP---STGTRVG-RQGHG--------ERSRRCRCCLGDAASPWAQSLPYTQVQG 142 +P G+ P G G +QGHG + +R + A L YTQ Sbjct: 393 QPYGGTNPYSQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIP 452 Query: 143 GRGFLPEEVGPHQRGQEG 160 G + GP GQ+G Sbjct: 453 PYG----QQGPSGYGQQG 466 >gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] Length = 2068 Score = 40.4 bits (93), Expect = 0.002 Identities = 40/138 (28%), Positives = 54/138 (39%), Gaps = 19/138 (13%) Query: 36 QAWGGGGEAGAHQRICGTRRGETHKSRSRDGSTGRGG-PNARSPHPLGPAGAGVPRSLSP 94 Q WG A A G + +H + GS+G GG P AR+P P P + P Sbjct: 335 QCWGAAAAAAAAAAASGGAQQRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQ--MGKMRP 392 Query: 95 RPVPGSEP---STGTRVG-RQGHG--------ERSRRCRCCLGDAASPWAQSLPYTQVQG 142 +P G+ P G G +QGHG + +R + A L YTQ Sbjct: 393 QPYGGTNPYSQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIP 452 Query: 143 GRGFLPEEVGPHQRGQEG 160 G + GP GQ+G Sbjct: 453 PYG----QQGPSGYGQQG 466 >gi|139394604 bromo adjacent homology domain containing 1 [Homo sapiens] Length = 780 Score = 40.0 bits (92), Expect = 0.002 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Query: 50 ICGTRR---GETHKSRSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEP 102 + GTRR G+ H+SR RD +TG + + P LG G G R LSP P P P Sbjct: 140 LAGTRRSRAGDPHRSRDRDRATGGWSSSKKRPR-LGDLGGG-SRDLSPEPAPDEGP 193 >gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo sapiens] Length = 921 Score = 39.7 bits (91), Expect = 0.003 Identities = 56/185 (30%), Positives = 70/185 (37%), Gaps = 26/185 (14%) Query: 66 GSTGRGGP-----NARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC 120 GSTG G N+ P GP G PR P+ +PGS G VG G + Sbjct: 589 GSTGAPGKPGQMGNSGKPGQQGPPGEVGPR--GPQGLPGSRGELGP-VGSPGLPGK---- 641 Query: 121 RCCLGDAASPWAQSLP----YTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDA-TLSRRNC 175 LG SP LP ++G RG + E P +G++GA G+A Sbjct: 642 ---LGSLGSPGLPGLPGPPGLPGMKGDRGVVGE---PGPKGEQGASGEEGEAGERGELGD 695 Query: 176 TPTPPYAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARL 235 P G + P G+ G+ PEG G P G R PP R GA Sbjct: 696 IGLPGPKGSAGNP--GEPGLRGPEGSRGLP-GVEGPRGPPGPRGVQGEQGATGLPGVQGP 752 Query: 236 PGFLP 240 PG P Sbjct: 753 PGRAP 757 Score = 28.5 bits (62), Expect = 6.7 Identities = 42/135 (31%), Positives = 53/135 (39%), Gaps = 20/135 (14%) Query: 62 RSRDGST---GRGGPNARSPHPLGPAGA-GVPRSLSPRPVPGSE---PSTGTRVGRQGHG 114 R G+T GR GP P P GP G G P + R +PG + + G R + G Sbjct: 783 RPDSGATGLPGRPGP----PGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLG 838 Query: 115 ERSRRCRCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRN 174 E+ R G P A LP G G P G + G++G G A + Sbjct: 839 EKGERGPPGRGPNGLPGAIGLP-----GDPG--PASYG--RNGRDGERGPPGVAGIPGVP 889 Query: 175 CTPTPPYAGGSREPA 189 P PP G EPA Sbjct: 890 GPPGPPGLPGFCEPA 904 >gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo sapiens] Length = 678 Score = 39.7 bits (91), Expect = 0.003 Identities = 56/185 (30%), Positives = 70/185 (37%), Gaps = 26/185 (14%) Query: 66 GSTGRGGP-----NARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC 120 GSTG G N+ P GP G PR P+ +PGS G VG G + Sbjct: 346 GSTGAPGKPGQMGNSGKPGQQGPPGEVGPR--GPQGLPGSRGELGP-VGSPGLPGK---- 398 Query: 121 RCCLGDAASPWAQSLP----YTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDA-TLSRRNC 175 LG SP LP ++G RG + E P +G++GA G+A Sbjct: 399 ---LGSLGSPGLPGLPGPPGLPGMKGDRGVVGE---PGPKGEQGASGEEGEAGERGELGD 452 Query: 176 TPTPPYAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPPPLSRRCFRSGGAAVFTTTARL 235 P G + P G+ G+ PEG G P G R PP R GA Sbjct: 453 IGLPGPKGSAGNP--GEPGLRGPEGSRGLP-GVEGPRGPPGPRGVQGEQGATGLPGVQGP 509 Query: 236 PGFLP 240 PG P Sbjct: 510 PGRAP 514 Score = 28.5 bits (62), Expect = 6.7 Identities = 42/135 (31%), Positives = 53/135 (39%), Gaps = 20/135 (14%) Query: 62 RSRDGST---GRGGPNARSPHPLGPAGA-GVPRSLSPRPVPGSE---PSTGTRVGRQGHG 114 R G+T GR GP P P GP G G P + R +PG + + G R + G Sbjct: 540 RPDSGATGLPGRPGP----PGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLG 595 Query: 115 ERSRRCRCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRN 174 E+ R G P A LP G G P G + G++G G A + Sbjct: 596 EKGERGPPGRGPNGLPGAIGLP-----GDPG--PASYG--RNGRDGERGPPGVAGIPGVP 646 Query: 175 CTPTPPYAGGSREPA 189 P PP G EPA Sbjct: 647 GPPGPPGLPGFCEPA 661 >gi|13994253 Golgi reassembly stacking protein 1 [Homo sapiens] Length = 440 Score = 39.7 bits (91), Expect = 0.003 Identities = 30/90 (33%), Positives = 37/90 (41%), Gaps = 8/90 (8%) Query: 20 YNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPH 79 YN + R AWGG G G CG G H+ ++ S + P P Sbjct: 166 YNSKSDSCREVTVTPNAAWGGEGSLG-----CGIGYGYLHRIPTQPPSYHKKPPGTPPPS 220 Query: 80 PLGPAGAGVPRSLSPRPVPGSEPS--TGTR 107 L P GA P +L P P P PS TG+R Sbjct: 221 AL-PLGAPPPDALPPGPTPEDSPSLETGSR 249 >gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] Length = 1464 Score = 39.3 bits (90), Expect = 0.004 Identities = 47/162 (29%), Positives = 60/162 (37%), Gaps = 14/162 (8%) Query: 61 SRSRDGSTGRGGPNARSPHPLGPAG-AGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRR 119 +R DG+TG GP P P GPAG G P ++ + G + G+ + GE Sbjct: 321 ARGNDGATGAAGP----PGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPP 376 Query: 120 CRC-CLGDAASPWAQSLPYTQ-VQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTP 177 G A +P A P + G G P RG G G + P Sbjct: 377 GPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEP 436 Query: 178 TPPYA----GGSREPARGKEGVWTPEGGDGDPEGNRRLRPPP 215 P + G EP G GV P G G+ EG R R P Sbjct: 437 GAPGSKGDTGAKGEP--GPVGVQGPPGPAGE-EGKRGARGEP 475 Score = 38.9 bits (89), Expect = 0.005 Identities = 50/174 (28%), Positives = 55/174 (31%), Gaps = 38/174 (21%) Query: 65 DGSTGRGGPNARS--PHPLGPAG----------------AGVPRSLSPRPVPGSEPSTGT 106 DG TG GP + P P GP G AG P R VPG + G Sbjct: 550 DGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGP 609 Query: 107 -----RVGRQG-------HGERSRRCRCCLGDAASPWAQSLPYTQVQGGRGFLPEEVG-P 153 G QG GER + G A SP Q LP G P E G P Sbjct: 610 AGKDGEAGAQGPPGPAGPAGERGEQ-----GPAGSPGFQGLPGPAGPPGEAGKPGEQGVP 664 Query: 154 HQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSR--EPARGKEGVWTPEGGDGDP 205 G G G+ PP G R A G +G G G P Sbjct: 665 GDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAP 718 Score = 37.4 bits (85), Expect = 0.014 Identities = 42/155 (27%), Positives = 54/155 (34%), Gaps = 34/155 (21%) Query: 66 GSTGRGGPNARS-----PHPLGPAG-AGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRR 119 G G+ GP+ S P P+GP G AG P PG+E S G G+R Sbjct: 980 GEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGE- 1038 Query: 120 CRCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTP 179 G A P A P P VGP + + TG P Sbjct: 1039 ----TGPAGPPGAPGAPGA---------PGPVGPAGKSGDRGETG------------PAG 1073 Query: 180 PYAGGSREPARGKEGVWTPEGGDGD--PEGNRRLR 212 P ARG G P G G+ +G+R ++ Sbjct: 1074 PAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIK 1108 Score = 37.0 bits (84), Expect = 0.019 Identities = 48/171 (28%), Positives = 56/171 (32%), Gaps = 39/171 (22%) Query: 65 DGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQG-HGERSRRCRCC 123 DG+ G GP P P G P + PR +PG GR G G R Sbjct: 274 DGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGER-------GRPGAPGPAGARGNDG 326 Query: 124 LGDAASPWAQSLP-----YTQVQGGRGFLPEEVGPH-QRGQEG----------------- 160 AA P + P + G +G E GP RG EG Sbjct: 327 ATGAAGPPGPTGPAGPPGFPGAVGAKG----EAGPQGPRGSEGPQGVRGEPGPPGPAGAA 382 Query: 161 --AGTGWGDATLSRRNCTPTPPYAGGSREP-ARGKEGVWTPEGGDGDPEGN 208 AG D + P AG P ARG G P GG P+GN Sbjct: 383 GPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGP-GGPPGPKGN 432 Score = 33.1 bits (74), Expect = 0.27 Identities = 40/151 (26%), Positives = 50/151 (33%), Gaps = 11/151 (7%) Query: 55 RGETHKSRSRDGSTGRGGPNARS-PHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGH 113 +GE+ S + RG P R P P GPAG P +P EP G G Sbjct: 781 KGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGP 840 Query: 114 GERSRRCRCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRR 173 + G A P + G +G P G GA G S Sbjct: 841 PGPA-------GPAGPP--GPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGN 891 Query: 174 NCTPTPPYAGGSREPARGKEGVWTPEGGDGD 204 P PP G +E +G G P G G+ Sbjct: 892 AGPPGPPGPAG-KEGGKGPRGETGPAGRPGE 921 Score = 31.6 bits (70), Expect = 0.80 Identities = 46/165 (27%), Positives = 54/165 (32%), Gaps = 29/165 (17%) Query: 62 RSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGT--RVGRQGH-GERSR 118 R G G GP P P G + PR PG G G+ G GER Sbjct: 187 RGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGER-- 244 Query: 119 RCRCCLGDAASPWAQSLPYTQ----VQGGRGF--LPEEVG----------PHQRGQEGAG 162 G A+ LP T ++G RGF L G P G+ GA Sbjct: 245 ------GPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAP 298 Query: 163 TGWGDATLSRRNCTPTPPYAGGSR--EPARGKEGVWTPEGGDGDP 205 G L P P G+R + A G G P G G P Sbjct: 299 GQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPP 343 Score = 31.6 bits (70), Expect = 0.80 Identities = 40/154 (25%), Positives = 49/154 (31%), Gaps = 19/154 (12%) Query: 62 RSRDGSTGRGGPNARSPHPLGPAG-AGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC 120 + DGS G+ G + P+GP G AG P G TG R GE Sbjct: 751 KGADGSPGKDGVRGLTG-PIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPG 809 Query: 121 RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP 180 G A P A P + + G + GP G G P P Sbjct: 810 PA--GFAGPPGADGQPGAKGEPGDAGAKGDAGPP--GPAGPAG-------------PPGP 852 Query: 181 YAGGSREPARGKEGVWTPEGGDGDPEGNRRLRPP 214 A+G G P G G P R+ PP Sbjct: 853 IGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPP 886 Score = 28.1 bits (61), Expect = 8.8 Identities = 42/151 (27%), Positives = 49/151 (32%), Gaps = 29/151 (19%) Query: 61 SRSRDGSTGRGGPNARSPHPLGPAGA----GVPRSLSPRPVPGSEPSTGTRVGRQGHGER 116 S RDGS G G + P GP GA G P + P G TG G Sbjct: 1023 SPGRDGSPGAKGDRGET-GPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPV 1081 Query: 117 SRRCRCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCT 176 R A P QG RG + G++G G S Sbjct: 1082 GAR------GPAGP----------QGPRG------DKGETGEQGDRGIKGHRGFSGLQGP 1119 Query: 177 PTPPYAGGSREP--ARGKEGVWTPEGGDGDP 205 P PP + G + P A G G P G G P Sbjct: 1120 PGPPGSPGEQGPSGASGPAGPRGPPGSAGAP 1150 >gi|169169586 PREDICTED: hypothetical protein [Homo sapiens] Length = 251 Score = 38.9 bits (89), Expect = 0.005 Identities = 65/240 (27%), Positives = 83/240 (34%), Gaps = 60/240 (25%) Query: 29 ITQRWGRQAWGGGGEAGAHQRICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAGAGV 88 I +R +Q GGGG G H+ H SR+ P R+P PA + Sbjct: 2 IRKRPHQQGGGGGGGQGRHR----------HSSRA---------PGTRTPAT--PARSPR 40 Query: 89 PRSLSPRPVPGSEPSTGTRVGRQGHGERSRRCRCCLGDAASPWAQSLPYTQVQGGRGFLP 148 P +PRP PG R++ G SP A + P G P Sbjct: 41 PPLCAPRPAPG----------------RAQSPVPAAGAVPSPPAAAHPARPALRGETPAP 84 Query: 149 EEVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDPEGN 208 G+ G T G+ S R P GG RG+ G P P + Sbjct: 85 --------GRRGRATTRGEVQPSVRPPLSHRPLRGGGM--GRGRPGKGPP------PNPS 128 Query: 209 RRLRP-PPLSRRCFRS----GGAAVFTTTARL--PGFLPDCWGVSLAPHHVRWCAEVRVC 261 RRL P PP RR + S G AA R P F WG + H+R + C Sbjct: 129 RRLPPAPPGGRRTWLSALATGPAAGGAGRRRRSPPVFRAADWGFGRSEQHLRGLTLIISC 188 >gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] Length = 1838 Score = 38.5 bits (88), Expect = 0.007 Identities = 55/199 (27%), Positives = 75/199 (37%), Gaps = 60/199 (30%) Query: 38 WGGGGEAGAHQRICGTRRGETHK--SRSRDGSTGRGGPNARS--PHPLGPAGAGV----- 88 +GGGG+AG+ + + + ++R G GP + P P+GP G+G Sbjct: 526 FGGGGDAGSKGPMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKGEP 585 Query: 89 -------PRSLSPRPVPGSEPSTGTRVGRQGHGERSRRCRCCLGDAASPWAQSLP-YTQV 140 PR + P P +P GR+G A S A+ +P T Sbjct: 586 GDVGPQGPRGVQGPPGPAGKP------GRRGR-------------AGSDGARGMPGQTGP 626 Query: 141 QGGRGF-----LPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGV 195 +G RGF LP E G RG G + P PP G RG +G Sbjct: 627 KGDRGFDGLAGLPGEKG--HRGDPGP------------SGPPGPPGDDGE----RGDDGE 668 Query: 196 WTPEGGDGDPEGNRRLRPP 214 P G G+P G R L P Sbjct: 669 VGPRGLPGEP-GPRGLLGP 686 Score = 36.6 bits (83), Expect = 0.025 Identities = 50/156 (32%), Positives = 59/156 (37%), Gaps = 35/156 (22%) Query: 65 DGSTGRGGPNARSPHPLGPAG----AGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRC 120 +G GRGGPN P PLGP G GVP +PG GRQG Sbjct: 843 EGPKGRGGPNG-DPGPLGPPGEKGKLGVP------GLPGYP-------GRQGP------- 881 Query: 121 RCCLGDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPP 180 + +G P A +GGRG P + GP RGQ G G+ P P Sbjct: 882 KGSIGFPGFPGANG-----EKGGRG-TPGKPGP--RGQRGPTGPRGERGPRGITGKPGPK 933 Query: 181 YAGGSREPA--RGKEGVWTPEGGDGDPEGNRRLRPP 214 G PA G+ G P+G G P PP Sbjct: 934 GNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPP 969 Score = 35.4 bits (80), Expect = 0.055 Identities = 44/151 (29%), Positives = 61/151 (40%), Gaps = 10/151 (6%) Query: 62 RSRDGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGH-GERSRRC 120 + +G G GP A SP GPAGA P + RP P P G G G + Sbjct: 1074 KGNEGPPGPPGP-AGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAG 1132 Query: 121 RCCL-GDAASPW-AQSLPYTQVQGGRGFLPEEVGPHQRGQEG-AGTGWGDATLSRRNCTP 177 R L G P A + G +G + E P Q+G +G G + Sbjct: 1133 RDGLQGPVGLPGPAGPVGPPGEDGDKGEIGE---PGQKGSKGDKGEQGPPGPTGPQGPIG 1189 Query: 178 TPPYAGGSREPA-RGKEGVWTPEGGDGDPEG 207 P +G EP RG++G++ +G +G P G Sbjct: 1190 QPGPSGADGEPGPRGQQGLFGQKGDEG-PRG 1219 Score = 32.7 bits (73), Expect = 0.36 Identities = 39/143 (27%), Positives = 50/143 (34%), Gaps = 21/143 (14%) Query: 65 DGSTGRGGPNARSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRCRCCL 124 DG G GP P P G P + P +PG + +G + G +GH + Sbjct: 1437 DGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPK-GEKGHPG-------LI 1488 Query: 125 GDAASPWAQSLPYTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGG 184 G P Q +G RG P +G G G S P PP G Sbjct: 1489 GLIGPPGEQG-----EKGDRGL------PGPQGSSGPKGEQGITGPSGPIGPPGPPGLPG 1537 Query: 185 SREP--ARGKEGVWTPEGGDGDP 205 P A+G G P+G G P Sbjct: 1538 PPGPKGAKGSSGPTGPKGEAGHP 1560 Score = 30.0 bits (66), Expect = 2.3 Identities = 39/147 (26%), Positives = 51/147 (34%), Gaps = 14/147 (9%) Query: 69 GRGGPNARSPH----PLGPAGAGVPRSLSPRPVP----GSEPSTGTRVGRQGHGERS-RR 119 GRG P P P GP G PR ++ +P P G + G R +G + Sbjct: 899 GRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTG 958 Query: 120 CRCCLGDAASPWAQSLP-YTQVQGGRGFLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPT 178 G P LP + +G GF + P G G G+ P Sbjct: 959 FPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPG 1018 Query: 179 PPYAGGSREPARGKEGVWTPEGGDGDP 205 PP G +G G+ EG GDP Sbjct: 1019 PPGPPGE----QGLPGLAGKEGTKGDP 1041 >gi|169209217 PREDICTED: similar to hCG2042704 [Homo sapiens] Length = 511 Score = 38.5 bits (88), Expect = 0.007 Identities = 61/211 (28%), Positives = 78/211 (36%), Gaps = 47/211 (22%) Query: 19 RYNRNRCTLRITQRWGRQAWGGGGEAGAHQRICGTRRG--ETHKSRSRDG-STGRGGPNA 75 R+N R T R++Q A GGG A + + RRG H SR S R P+A Sbjct: 6 RHNHGRRTGRLSQ----SAREGGGWARPARAV---RRGGHPAHFCWSRPPVSRERDDPSA 58 Query: 76 RSPHPLGPAGAGVPRSLSPRPVPGSEPSTGTRVGRQGHGERSRRCRCCLGDAASPWAQSL 135 P P +P S SP P + + GRQ R CR SL Sbjct: 59 PRPVP------ALPSSPSPPPPVRRPSAAREQQGRQVPAGSLRDCRLA----------SL 102 Query: 136 PYTQVQGGRGFLPEEVGPHQR-GQEGAGTGWGDATLSRRNCTPTPPYA-GGSREPARGKE 193 P + GRG PH+ G + A G+ R+ P GG R P Sbjct: 103 PLQRPFRGRG-------PHRSLGCDAAPAALGNGRPGARSDRPCGAGGDGGGRLP----- 150 Query: 194 GVWTPEGGDGDPEGNRRLRPPPLSRRCFRSG 224 GD D + P PL+ RC+R G Sbjct: 151 -------GDDDDNDEEQPPPLPLTGRCWRDG 174 >gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens] Length = 717 Score = 38.5 bits (88), Expect = 0.007 Identities = 55/186 (29%), Positives = 68/186 (36%), Gaps = 22/186 (11%) Query: 39 GGGGEAGAHQRICGTRRGETHKSRS--RDGSTG-RGGPNARSPHPLGPAGAGVPRSLSPR 95 G GE G +GET ++ S G G +G P A P GP G P L Sbjct: 533 GSPGEKG--------EKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGV 584 Query: 96 PVPGSEPSTGTRVGRQG-HGERSRRCRCCLGDAASPWAQSL---PYTQVQGGRGFLPEEV 151 P P E G +G GE+ R G P A L P G +P Sbjct: 585 PGPKGEAGLDGAKGEKGFQGEKGDR-----GPLGLPGASGLDGRPGPPGTPGPIGVPGPA 639 Query: 152 GPH-QRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDPEGNRR 210 GP +RG +G G + PP G+R RGK+G P+G GD Sbjct: 640 GPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNR-GERGKKGSRGPKGDKGDQGAPGL 698 Query: 211 LRPPPL 216 P PL Sbjct: 699 DAPCPL 704 Score = 37.4 bits (85), Expect = 0.014 Identities = 52/180 (28%), Positives = 65/180 (36%), Gaps = 25/180 (13%) Query: 39 GGGGEAGAHQR-----ICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAG-AGVPRSL 92 G GE GA + G + + S G G GP P P GP G AGV + Sbjct: 350 GTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPG-LPGPPGPKGEAGVDGQV 408 Query: 93 SPRPVPGSEPSTGTRVGRQG-------HGERSRRCRCCLGDAASPWAQSLPYTQVQGGRG 145 P PG + G G QG GE + + Q + + G G Sbjct: 409 GPPGQPGDKGERGA-AGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPG 467 Query: 146 FLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDP 205 LP ++GP G G G+ L P PP G + P RGK G P G G P Sbjct: 468 -LPGQIGP--PGAPGIPGQKGEIGL------PGPPGHDGEKGP-RGKPGDMGPPGPQGPP 517 >gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] Length = 655 Score = 38.5 bits (88), Expect = 0.007 Identities = 55/186 (29%), Positives = 68/186 (36%), Gaps = 22/186 (11%) Query: 39 GGGGEAGAHQRICGTRRGETHKSRS--RDGSTG-RGGPNARSPHPLGPAGAGVPRSLSPR 95 G GE G +GET ++ S G G +G P A P GP G P L Sbjct: 471 GSPGEKG--------EKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGV 522 Query: 96 PVPGSEPSTGTRVGRQG-HGERSRRCRCCLGDAASPWAQSL---PYTQVQGGRGFLPEEV 151 P P E G +G GE+ R G P A L P G +P Sbjct: 523 PGPKGEAGLDGAKGEKGFQGEKGDR-----GPLGLPGASGLDGRPGPPGTPGPIGVPGPA 577 Query: 152 GPH-QRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDPEGNRR 210 GP +RG +G G + PP G+R RGK+G P+G GD Sbjct: 578 GPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNR-GERGKKGSRGPKGDKGDQGAPGL 636 Query: 211 LRPPPL 216 P PL Sbjct: 637 DAPCPL 642 Score = 37.4 bits (85), Expect = 0.014 Identities = 52/180 (28%), Positives = 65/180 (36%), Gaps = 25/180 (13%) Query: 39 GGGGEAGAHQR-----ICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAG-AGVPRSL 92 G GE GA + G + + S G G GP P P GP G AGV + Sbjct: 288 GTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPG-LPGPPGPKGEAGVDGQV 346 Query: 93 SPRPVPGSEPSTGTRVGRQG-------HGERSRRCRCCLGDAASPWAQSLPYTQVQGGRG 145 P PG + G G QG GE + + Q + + G G Sbjct: 347 GPPGQPGDKGERGA-AGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPG 405 Query: 146 FLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDP 205 LP ++GP G G G+ L P PP G + P RGK G P G G P Sbjct: 406 -LPGQIGP--PGAPGIPGQKGEIGL------PGPPGHDGEKGP-RGKPGDMGPPGPQGPP 455 >gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] Length = 657 Score = 38.5 bits (88), Expect = 0.007 Identities = 55/186 (29%), Positives = 68/186 (36%), Gaps = 22/186 (11%) Query: 39 GGGGEAGAHQRICGTRRGETHKSRS--RDGSTG-RGGPNARSPHPLGPAGAGVPRSLSPR 95 G GE G +GET ++ S G G +G P A P GP G P L Sbjct: 473 GSPGEKG--------EKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGV 524 Query: 96 PVPGSEPSTGTRVGRQG-HGERSRRCRCCLGDAASPWAQSL---PYTQVQGGRGFLPEEV 151 P P E G +G GE+ R G P A L P G +P Sbjct: 525 PGPKGEAGLDGAKGEKGFQGEKGDR-----GPLGLPGASGLDGRPGPPGTPGPIGVPGPA 579 Query: 152 GPH-QRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDPEGNRR 210 GP +RG +G G + PP G+R RGK+G P+G GD Sbjct: 580 GPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNR-GERGKKGSRGPKGDKGDQGAPGL 638 Query: 211 LRPPPL 216 P PL Sbjct: 639 DAPCPL 644 Score = 37.4 bits (85), Expect = 0.014 Identities = 52/180 (28%), Positives = 65/180 (36%), Gaps = 25/180 (13%) Query: 39 GGGGEAGAHQR-----ICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAG-AGVPRSL 92 G GE GA + G + + S G G GP P P GP G AGV + Sbjct: 290 GTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPG-LPGPPGPKGEAGVDGQV 348 Query: 93 SPRPVPGSEPSTGTRVGRQG-------HGERSRRCRCCLGDAASPWAQSLPYTQVQGGRG 145 P PG + G G QG GE + + Q + + G G Sbjct: 349 GPPGQPGDKGERGA-AGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPG 407 Query: 146 FLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDP 205 LP ++GP G G G+ L P PP G + P RGK G P G G P Sbjct: 408 -LPGQIGP--PGAPGIPGQKGEIGL------PGPPGHDGEKGP-RGKPGDMGPPGPQGPP 457 >gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] Length = 660 Score = 38.5 bits (88), Expect = 0.007 Identities = 55/186 (29%), Positives = 68/186 (36%), Gaps = 22/186 (11%) Query: 39 GGGGEAGAHQRICGTRRGETHKSRS--RDGSTG-RGGPNARSPHPLGPAGAGVPRSLSPR 95 G GE G +GET ++ S G G +G P A P GP G P L Sbjct: 476 GSPGEKG--------EKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGV 527 Query: 96 PVPGSEPSTGTRVGRQG-HGERSRRCRCCLGDAASPWAQSL---PYTQVQGGRGFLPEEV 151 P P E G +G GE+ R G P A L P G +P Sbjct: 528 PGPKGEAGLDGAKGEKGFQGEKGDR-----GPLGLPGASGLDGRPGPPGTPGPIGVPGPA 582 Query: 152 GPH-QRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDPEGNRR 210 GP +RG +G G + PP G+R RGK+G P+G GD Sbjct: 583 GPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNR-GERGKKGSRGPKGDKGDQGAPGL 641 Query: 211 LRPPPL 216 P PL Sbjct: 642 DAPCPL 647 Score = 37.4 bits (85), Expect = 0.014 Identities = 52/180 (28%), Positives = 65/180 (36%), Gaps = 25/180 (13%) Query: 39 GGGGEAGAHQR-----ICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAG-AGVPRSL 92 G GE GA + G + + S G G GP P P GP G AGV + Sbjct: 293 GTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPG-LPGPPGPKGEAGVDGQV 351 Query: 93 SPRPVPGSEPSTGTRVGRQG-------HGERSRRCRCCLGDAASPWAQSLPYTQVQGGRG 145 P PG + G G QG GE + + Q + + G G Sbjct: 352 GPPGQPGDKGERGA-AGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPG 410 Query: 146 FLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDP 205 LP ++GP G G G+ L P PP G + P RGK G P G G P Sbjct: 411 -LPGQIGP--PGAPGIPGQKGEIGL------PGPPGHDGEKGP-RGKPGDMGPPGPQGPP 460 >gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens] Length = 664 Score = 38.5 bits (88), Expect = 0.007 Identities = 55/186 (29%), Positives = 68/186 (36%), Gaps = 22/186 (11%) Query: 39 GGGGEAGAHQRICGTRRGETHKSRS--RDGSTG-RGGPNARSPHPLGPAGAGVPRSLSPR 95 G GE G +GET ++ S G G +G P A P GP G P L Sbjct: 480 GSPGEKG--------EKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGV 531 Query: 96 PVPGSEPSTGTRVGRQG-HGERSRRCRCCLGDAASPWAQSL---PYTQVQGGRGFLPEEV 151 P P E G +G GE+ R G P A L P G +P Sbjct: 532 PGPKGEAGLDGAKGEKGFQGEKGDR-----GPLGLPGASGLDGRPGPPGTPGPIGVPGPA 586 Query: 152 GPH-QRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDPEGNRR 210 GP +RG +G G + PP G+R RGK+G P+G GD Sbjct: 587 GPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNR-GERGKKGSRGPKGDKGDQGAPGL 645 Query: 211 LRPPPL 216 P PL Sbjct: 646 DAPCPL 651 Score = 37.4 bits (85), Expect = 0.014 Identities = 52/180 (28%), Positives = 65/180 (36%), Gaps = 25/180 (13%) Query: 39 GGGGEAGAHQR-----ICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAG-AGVPRSL 92 G GE GA + G + + S G G GP P P GP G AGV + Sbjct: 297 GTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPG-LPGPPGPKGEAGVDGQV 355 Query: 93 SPRPVPGSEPSTGTRVGRQG-------HGERSRRCRCCLGDAASPWAQSLPYTQVQGGRG 145 P PG + G G QG GE + + Q + + G G Sbjct: 356 GPPGQPGDKGERGA-AGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPG 414 Query: 146 FLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDP 205 LP ++GP G G G+ L P PP G + P RGK G P G G P Sbjct: 415 -LPGQIGP--PGAPGIPGQKGEIGL------PGPPGHDGEKGP-RGKPGDMGPPGPQGPP 464 >gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens] Length = 676 Score = 38.5 bits (88), Expect = 0.007 Identities = 55/186 (29%), Positives = 68/186 (36%), Gaps = 22/186 (11%) Query: 39 GGGGEAGAHQRICGTRRGETHKSRS--RDGSTG-RGGPNARSPHPLGPAGAGVPRSLSPR 95 G GE G +GET ++ S G G +G P A P GP G P L Sbjct: 492 GSPGEKG--------EKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGV 543 Query: 96 PVPGSEPSTGTRVGRQG-HGERSRRCRCCLGDAASPWAQSL---PYTQVQGGRGFLPEEV 151 P P E G +G GE+ R G P A L P G +P Sbjct: 544 PGPKGEAGLDGAKGEKGFQGEKGDR-----GPLGLPGASGLDGRPGPPGTPGPIGVPGPA 598 Query: 152 GPH-QRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDPEGNRR 210 GP +RG +G G + PP G+R RGK+G P+G GD Sbjct: 599 GPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNR-GERGKKGSRGPKGDKGDQGAPGL 657 Query: 211 LRPPPL 216 P PL Sbjct: 658 DAPCPL 663 Score = 37.4 bits (85), Expect = 0.014 Identities = 52/180 (28%), Positives = 65/180 (36%), Gaps = 25/180 (13%) Query: 39 GGGGEAGAHQR-----ICGTRRGETHKSRSRDGSTGRGGPNARSPHPLGPAG-AGVPRSL 92 G GE GA + G + + S G G GP P P GP G AGV + Sbjct: 309 GTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPG-LPGPPGPKGEAGVDGQV 367 Query: 93 SPRPVPGSEPSTGTRVGRQG-------HGERSRRCRCCLGDAASPWAQSLPYTQVQGGRG 145 P PG + G G QG GE + + Q + + G G Sbjct: 368 GPPGQPGDKGERGA-AGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPG 426 Query: 146 FLPEEVGPHQRGQEGAGTGWGDATLSRRNCTPTPPYAGGSREPARGKEGVWTPEGGDGDP 205 LP ++GP G G G+ L P PP G + P RGK G P G G P Sbjct: 427 -LPGQIGP--PGAPGIPGQKGEIGL------PGPPGHDGEKGP-RGKPGDMGPPGPQGPP 476 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.318 0.138 0.465 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,106,266 Number of Sequences: 37866 Number of extensions: 1009443 Number of successful extensions: 5893 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 485 Number of HSP's that attempted gapping in prelim test: 5067 Number of HSP's gapped (non-prelim): 1214 length of query: 277 length of database: 18,247,518 effective HSP length: 101 effective length of query: 176 effective length of database: 14,423,052 effective search space: 2538457152 effective search space used: 2538457152 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.