Guide to the Human Genome
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Name: LOC728991 Sequence: fasta or formatted (211aa) NCBI GI: 169211552
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {211aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         15           2
 C cysteine            4.3          9           3
 D aspartate           2.4          5           2
 E glutamate           6.2         13           2
 F phenylalanine       1.9          4           1
 G glycine            14.2         30           3
 H histidine           3.3          7           1
 I isoleucine          2.8          6           1
 K lysine              1.9          4           1
 L leucine            10.0         21           2
 M methionine          3.3          7           1
 N asparagine          1.9          4           1
 P proline             9.0         19           1
 Q glutamine           6.2         13           1
 R arginine            5.7         12           2
 S serine              7.6         16           3
 T threonine           3.3          7           1
 V valine              4.3          9           2
 W tryptophan          4.7         10           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728991             0.993   PREDICTED: hypothetical protein 
ADAMTS20              0.018   a disintegrin-like and metalloprotease with thrombo...
LOC100293209          0.018   PREDICTED: hypothetical protein 
LOC100289847          0.018   PREDICTED: hypothetical protein XP_002347087 
LMTK3                 0.018   lemur tyrosine kinase 3 
LOC100289782          0.016   PREDICTED: hypothetical protein XP_002347588 
LOC100127987          0.016   PREDICTED: hypothetical protein LOC100127987 
LOC100127987          0.016   PREDICTED: hypothetical protein LOC100127987 
LOC100127987          0.016   PREDICTED: hypothetical protein LOC100127987 
LOC100133885          0.011   PREDICTED: hypothetical protein 
COL4A6                0.011   type IV alpha 6 collagen isoform A precursor 
DNAJC6                0.011   DnaJ (Hsp40) homolog, subfamily C, member 6 
MLL4                  0.011   myeloid/lymphoid or mixed-lineage leukemia 4 
COL4A6                0.011   type IV alpha 6 collagen isoform B precursor 
FAM107B               0.011   hypothetical protein LOC83641 
FLJ22184              0.009   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.009   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.009   PREDICTED: hypothetical protein LOC80164 
C19orf43              0.009   hypothetical protein MGC2803 
FAM148C               0.009   nuclear localized factor 3 
MAP1A                 0.009   microtubule-associated protein 1A 
RPGR                  0.009   retinitis pigmentosa GTPase regulator isoform C [Hom...
ZFR2                  0.009   zinc finger RNA binding protein 2 isoform 1 
C2orf81               0.007   hypothetical protein LOC388963 
FAM171A2              0.007   family with sequence similarity 171, member A2 [Hom...
LOC100130503          0.007   PREDICTED: hypothetical protein 
LOC100130503          0.007   PREDICTED: hypothetical protein 
LOC100130503          0.007   PREDICTED: hypothetical protein 
ADAMTS7               0.007   ADAM metallopeptidase with thrombospondin type 1 mot...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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