Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100289847 Sequence: fasta or formatted (261aa) NCBI GI: 239749563
Description:

PREDICTED: hypothetical protein XP_002347087

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         25           1
 C cysteine            1.5          4           1
 D aspartate           1.5          4           1
 E glutamate           2.3          6           1
 F phenylalanine       1.5          4           1
 G glycine            14.9         39           2
 H histidine           2.7          7           1
 I isoleucine          3.4          9           1
 K lysine              3.1          8           1
 L leucine             9.2         24           2
 M methionine          0.4          1           1
 N asparagine          1.5          4           1
 P proline             9.6         25           2
 Q glutamine           5.4         14           2
 R arginine            6.9         18           1
 S serine              8.8         23           2
 T threonine           5.7         15           2
 V valine              5.7         15           1
 W tryptophan          4.6         12           1
 Y tyrosine            1.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347087 
LOC100293209          1.000   PREDICTED: hypothetical protein 
LOC100133161          0.023   PREDICTED: hypothetical protein 
TBKBP1                0.023   TBK1 binding protein 1 
LOC100289745          0.021   PREDICTED: hypothetical protein XP_002347086 
LOC100288749          0.021   PREDICTED: hypothetical protein XP_002342931 
LOC100132062          0.021   PREDICTED: hypothetical protein 
C15orf52              0.021   hypothetical protein LOC388115 
LOC100289782          0.019   PREDICTED: hypothetical protein XP_002347588 
LOC100132062          0.019   PREDICTED: hypothetical protein 
LOC100132287          0.019   PREDICTED: hypothetical protein 
LOC729756             0.017   PREDICTED: similar to hCG2041108 
LOC729756             0.017   PREDICTED: similar to hCG2041108 
LOC729756             0.017   PREDICTED: similar to hCG2041108 
LOC100130458          0.015   PREDICTED: hypothetical protein 
LOC100293294          0.015   PREDICTED: hypothetical protein 
LOC100130458          0.015   PREDICTED: hypothetical protein 
LOC100130458          0.015   PREDICTED: hypothetical protein 
PHF1                  0.015   PHD finger protein 1 isoform a 
LOC728991             0.015   PREDICTED: hypothetical protein 
LOC100293235          0.015   PREDICTED: hypothetical protein 
LOC100291469          0.015   PREDICTED: hypothetical protein XP_002346693 
KIAA0649              0.015   1A6/DRIM (down-regulated in metastasis) interacting ...
CDKN1C                0.013   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.013   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.013   cyclin-dependent kinase inhibitor 1C isoform a 
TRIP6                 0.013   thyroid receptor-interacting protein 6 
ANO8                  0.013   anoctamin 8 
MEPCE                 0.013   bin3, bicoid-interacting 3 
LOC388279             0.013   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press