Guide to the Human Genome
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Name: LOC728991 Sequence: fasta or formatted (211aa) NCBI GI: 113427091
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {211aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         15           2
 C cysteine            4.3          9           3
 D aspartate           2.4          5           2
 E glutamate           6.2         13           2
 F phenylalanine       1.9          4           1
 G glycine            14.2         30           3
 H histidine           3.3          7           1
 I isoleucine          2.8          6           1
 K lysine              1.9          4           1
 L leucine            10.0         21           2
 M methionine          3.3          7           1
 N asparagine          1.9          4           1
 P proline             8.5         18           1
 Q glutamine           6.2         13           1
 R arginine            5.7         12           2
 S serine              8.1         17           3
 T threonine           3.3          7           1
 V valine              4.3          9           2
 W tryptophan          4.7         10           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728991             0.995   PREDICTED: hypothetical protein 
ADAMTS20              0.018   a disintegrin-like and metalloprotease with thrombo...
LMTK3                 0.018   lemur tyrosine kinase 3 
LOC100127987          0.016   PREDICTED: hypothetical protein LOC100127987 
LOC100127987          0.016   PREDICTED: hypothetical protein LOC100127987 
LOC100127987          0.016   PREDICTED: hypothetical protein LOC100127987 
LOC100132472          0.016   PREDICTED: hypothetical protein 
C19orf43              0.011   hypothetical protein MGC2803 
FAM107B               0.011   hypothetical protein LOC83641 
PITPNM1               0.011   phosphatidylinositol transfer protein, membrane-ass...
PITPNM1               0.011   phosphatidylinositol transfer protein, membrane-ass...
LOC100289782          0.009   PREDICTED: hypothetical protein XP_002347588 
RPGR                  0.009   retinitis pigmentosa GTPase regulator isoform C [Hom...
TRIOBP                0.009   TRIO and F-actin binding protein isoform 6 
C2orf81               0.009   hypothetical protein LOC388963 
LOC100130503          0.009   PREDICTED: hypothetical protein 
LOC100130503          0.009   PREDICTED: hypothetical protein 
LOC100130503          0.009   PREDICTED: hypothetical protein 
MAP1A                 0.009   microtubule-associated protein 1A 
ZFR2                  0.009   zinc finger RNA binding protein 2 isoform 1 
LOC729506             0.007   PREDICTED: hypothetical protein 
LOC729506             0.007   PREDICTED: hypothetical protein 
ADAMTS7               0.007   ADAM metallopeptidase with thrombospondin type 1 mot...
TRIO                  0.007   triple functional domain (PTPRF interacting) 
LOC100292745          0.007   PREDICTED: hypothetical protein 
LOC729506             0.007   PREDICTED: hypothetical protein 
LOC100290074          0.007   PREDICTED: hypothetical protein XP_002346855 
LOC100287034          0.007   PREDICTED: hypothetical protein XP_002342693 
C5orf32               0.007   hypothetical protein LOC84418 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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