Guide to the Human Genome
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Search of human proteins with 169210300

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169210300 PREDICTED: hypothetical protein LOC100131303 [Homo
sapiens]
         (123 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169210300 PREDICTED: hypothetical protein LOC100131303 [Homo ...   260   2e-70
gi|169210470 PREDICTED: hypothetical protein LOC100131303 [Homo ...   260   2e-70
gi|169209989 PREDICTED: hypothetical protein LOC100131303 [Homo ...   260   2e-70
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]     32   0.16 
gi|169177031 PREDICTED: similar to hCG30082, partial [Homo sapiens]    31   0.27 
gi|4505531 oxysterol binding protein [Homo sapiens]                    30   0.46 
gi|148612809 WNK lysine deficient protein kinase 1 [Homo sapiens]      30   0.60 
gi|239756547 PREDICTED: hypothetical protein [Homo sapiens]            30   0.60 
gi|71143119 signal-induced proliferation-associated 1 like 3 [Ho...    29   1.0  
gi|19924103 synapsin II isoform IIa [Homo sapiens]                     28   1.3  
gi|89941479 hypothetical protein LOC148137 [Homo sapiens]              28   1.3  
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap...    28   2.3  
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap...    28   2.3  
gi|22779860 forkhead box L1 [Homo sapiens]                             28   2.3  
gi|157739945 tetratricopeptide repeat, ankyrin repeat and coiled...    28   2.3  
gi|157266264 pleckstrin homology-like domain, family B, member 3...    28   2.3  
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p...    27   3.0  
gi|151301137 AT-hook transcription factor [Homo sapiens]               27   3.0  
gi|178557736 microtubule-associated protein tau isoform 5 [Homo ...    27   3.9  
gi|239752975 PREDICTED: hypothetical protein [Homo sapiens]            27   3.9  
gi|239747564 PREDICTED: hypothetical protein XP_002347660 [Homo ...    27   3.9  
gi|239741438 PREDICTED: hypothetical protein XP_002342169 [Homo ...    27   3.9  
gi|38201621 eukaryotic translation initiation factor 4 gamma, 1 ...    27   3.9  
gi|38201627 eukaryotic translation initiation factor 4 gamma, 1 ...    27   3.9  
gi|38201623 eukaryotic translation initiation factor 4 gamma, 1 ...    27   3.9  
gi|19923855 SYAP1 protein [Homo sapiens]                               27   3.9  
gi|75677365 dynein heavy chain domain 3 [Homo sapiens]                 27   3.9  
gi|39812378 RAN binding protein 9 [Homo sapiens]                       27   5.1  
gi|55741677 SET domain containing 1A [Homo sapiens]                    27   5.1  
gi|19111150 angiomotin isoform 2 [Homo sapiens]                        27   5.1  

>gi|169210300 PREDICTED: hypothetical protein LOC100131303 [Homo
           sapiens]
          Length = 123

 Score =  260 bits (665), Expect = 2e-70
 Identities = 123/123 (100%), Positives = 123/123 (100%)

Query: 1   MTDRILYIVSNMSSVPWEGSAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGG 60
           MTDRILYIVSNMSSVPWEGSAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGG
Sbjct: 1   MTDRILYIVSNMSSVPWEGSAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGG 60

Query: 61  YRVHGDAPLATPTKAEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLEHRGRRLTPQK 120
           YRVHGDAPLATPTKAEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLEHRGRRLTPQK
Sbjct: 61  YRVHGDAPLATPTKAEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLEHRGRRLTPQK 120

Query: 121 LAG 123
           LAG
Sbjct: 121 LAG 123


>gi|169210470 PREDICTED: hypothetical protein LOC100131303 [Homo
           sapiens]
          Length = 123

 Score =  260 bits (665), Expect = 2e-70
 Identities = 123/123 (100%), Positives = 123/123 (100%)

Query: 1   MTDRILYIVSNMSSVPWEGSAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGG 60
           MTDRILYIVSNMSSVPWEGSAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGG
Sbjct: 1   MTDRILYIVSNMSSVPWEGSAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGG 60

Query: 61  YRVHGDAPLATPTKAEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLEHRGRRLTPQK 120
           YRVHGDAPLATPTKAEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLEHRGRRLTPQK
Sbjct: 61  YRVHGDAPLATPTKAEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLEHRGRRLTPQK 120

Query: 121 LAG 123
           LAG
Sbjct: 121 LAG 123


>gi|169209989 PREDICTED: hypothetical protein LOC100131303 [Homo
           sapiens]
          Length = 123

 Score =  260 bits (665), Expect = 2e-70
 Identities = 123/123 (100%), Positives = 123/123 (100%)

Query: 1   MTDRILYIVSNMSSVPWEGSAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGG 60
           MTDRILYIVSNMSSVPWEGSAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGG
Sbjct: 1   MTDRILYIVSNMSSVPWEGSAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGG 60

Query: 61  YRVHGDAPLATPTKAEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLEHRGRRLTPQK 120
           YRVHGDAPLATPTKAEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLEHRGRRLTPQK
Sbjct: 61  YRVHGDAPLATPTKAEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLEHRGRRLTPQK 120

Query: 121 LAG 123
           LAG
Sbjct: 121 LAG 123


>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
          Length = 538

 Score = 31.6 bits (70), Expect = 0.16
 Identities = 26/80 (32%), Positives = 30/80 (37%), Gaps = 27/80 (33%)

Query: 13  SSVPWEGSAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGGYRVHGDAPLATP 72
           ++ P     AAA  AT+PP+PG                         G R    APLA P
Sbjct: 142 AAAPARAPRAAAAAATAPPSPGPAQ---------------------PGPRAQRAAPLAAP 180

Query: 73  TKAEAEKPA------PRRAP 86
             A A  PA      PRRAP
Sbjct: 181 PPAPAAPPAVAPPAGPRRAP 200


>gi|169177031 PREDICTED: similar to hCG30082, partial [Homo sapiens]
          Length = 299

 Score = 30.8 bits (68), Expect = 0.27
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 71  TPTKAEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLEHRG 113
           TP   + + P PR     R    ++ +   C +P+ R L+HRG
Sbjct: 162 TPRPRDCDTPRPRDCDTPRPRDCDTPRPRDCDTPRPRDLKHRG 204


>gi|4505531 oxysterol binding protein [Homo sapiens]
          Length = 807

 Score = 30.0 bits (66), Expect = 0.46
 Identities = 17/47 (36%), Positives = 22/47 (46%)

Query: 16  PWEGSAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGGYR 62
           P  G  AAA PA +PPT G       G G  + GW  +    + GY+
Sbjct: 60  PGAGGVAAAGPAPAPPTGGSGGSGAGGSGSAREGWLFKWTNYIKGYQ 106


>gi|148612809 WNK lysine deficient protein kinase 1 [Homo sapiens]
          Length = 2382

 Score = 29.6 bits (65), Expect = 0.60
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 20  SAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGGYRVHGDAPLATPTKAEAEK 79
           S  AAVP ++PP P H          +QV          G   V G AP   P+    ++
Sbjct: 106 SIPAAVPQSAPPEP-HREETVTATATSQVAQQPPAAAAPGEQAVAGPAPSTVPSSTSKDR 164

Query: 80  P 80
           P
Sbjct: 165 P 165


>gi|239756547 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 240

 Score = 29.6 bits (65), Expect = 0.60
 Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 17  WEGSAAAAVPATS-PPTPGHYHVLYRGCGETQVGWHGETYCLVGGYRVHGDAPLATPTKA 75
           W  S  AA  A   PP P   H    G G +Q  W GE +    G R      L   + A
Sbjct: 79  WRRSEPAARTAQGLPPEPEPTHTRVAGLGSSQPSWEGELW----GVRHLVSLSLPASSGA 134

Query: 76  EAEKPAPRR 84
            A  P P R
Sbjct: 135 CAPPPLPPR 143


>gi|71143119 signal-induced proliferation-associated 1 like 3 [Homo
            sapiens]
          Length = 1781

 Score = 28.9 bits (63), Expect = 1.0
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 13/85 (15%)

Query: 13   SSVPWEGSAAAA---VPAT---SPPTPGHYHVLYRGCGETQVGWHGETYCLVGGYRVHGD 66
            S+ PW+ S  A+   +PA+   +P TPGH   L R   +T +    E+  L      H  
Sbjct: 1078 SNAPWQWSGPASHNSLPASKWATPTTPGHAQSLSRPLKQTPIVPFRESQPL------HSK 1131

Query: 67   APLATPTKAEAEKPA-PRRAPKRRQ 90
             P++ P       PA   R P  RQ
Sbjct: 1132 RPVSFPETPYTVSPAGADRVPPYRQ 1156


>gi|19924103 synapsin II isoform IIa [Homo sapiens]
          Length = 582

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)

Query: 59  GGYRVHGDAPLATPTKAEAEKP--APRRAPK 87
           GG   HGDAP ++ + AEA+ P  AP + P+
Sbjct: 502 GGPTTHGDAPSSSSSLAEAQPPLAAPPQKPQ 532


>gi|89941479 hypothetical protein LOC148137 [Homo sapiens]
          Length = 425

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 70  ATPTKAEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLE 110
           A+P  A+A+ P P  AP   QA +  + D+     + R+LE
Sbjct: 257 ASPAPAQAQTPTPAPAPASSQAPLRPEDDILYQWRQRRKLE 297


>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sapiens]
          Length = 1758

 Score = 27.7 bits (60), Expect = 2.3
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 76   EAEKPAPRRAPKRRQATIES--DKDLGCSSPKIRRLE 110
            E  KP   +  KR++ T E   DKD   SS KI +LE
Sbjct: 1101 EKNKPLDNKGEKRKRKTEEKGVDKDFESSSMKISKLE 1137


>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sapiens]
          Length = 1792

 Score = 27.7 bits (60), Expect = 2.3
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 76   EAEKPAPRRAPKRRQATIES--DKDLGCSSPKIRRLE 110
            E  KP   +  KR++ T E   DKD   SS KI +LE
Sbjct: 1135 EKNKPLDNKGEKRKRKTEEKGVDKDFESSSMKISKLE 1171


>gi|22779860 forkhead box L1 [Homo sapiens]
          Length = 345

 Score = 27.7 bits (60), Expect = 2.3
 Identities = 16/52 (30%), Positives = 22/52 (42%)

Query: 59  GGYRVHGDAPLATPTKAEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLE 110
           G YR     P   P   EA++P      +  +A  E+    G S P I RL+
Sbjct: 136 GNYRRRKRKPKPGPGAPEAKRPRAETHQRSAEAQPEAGSGAGGSGPAISRLQ 187


>gi|157739945 tetratricopeptide repeat, ankyrin repeat and
           coiled-coil containing 2 [Homo sapiens]
          Length = 1990

 Score = 27.7 bits (60), Expect = 2.3
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 62  RVHGDAPLATPTKAEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLEHRGRRLTPQKL 121
           ++  D+P A+P   +A +  P   P    ++I S    G    + RR E   RRL  Q +
Sbjct: 395 QIASDSPHASPKHVDANRELPLTQPPSAHSSITSGSCPGTPEMR-RRQEEAMRRLASQVV 453

Query: 122 A 122
           A
Sbjct: 454 A 454


>gi|157266264 pleckstrin homology-like domain, family B, member 3
           [Homo sapiens]
          Length = 640

 Score = 27.7 bits (60), Expect = 2.3
 Identities = 13/19 (68%), Positives = 15/19 (78%), Gaps = 1/19 (5%)

Query: 18  EGSAAAAVPA-TSPPTPGH 35
           EGS+  AVPA T+PPTP H
Sbjct: 484 EGSSGPAVPAITAPPTPPH 502


>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
           potassium channel 4 [Homo sapiens]
          Length = 1203

 Score = 27.3 bits (59), Expect = 3.0
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 10/73 (13%)

Query: 8   IVSNMSSVPWEGSAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGGYRVHGDA 67
           ++ + SS P  G+  +     S PTP        G   T +   G  +  +GG     D+
Sbjct: 874 LLPSSSSSPPPGACGSP----SAPTPS------AGVAATTIAGFGHFHKALGGSLSSSDS 923

Query: 68  PLATPTKAEAEKP 80
           PL TP +  A  P
Sbjct: 924 PLLTPLQPGARSP 936


>gi|151301137 AT-hook transcription factor [Homo sapiens]
          Length = 1439

 Score = 27.3 bits (59), Expect = 3.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 59  GGYRVHGDAPLATPTKAEAEKPAPRRAP 86
           GG  +  D   ATP KAEA +  PR+ P
Sbjct: 792 GGDSLEVDGVAATPGKAEATRVLPRQCP 819


>gi|178557736 microtubule-associated protein tau isoform 5 [Homo
          sapiens]
          Length = 412

 Score = 26.9 bits (58), Expect = 3.9
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 16/63 (25%)

Query: 51 HGETYCL-----VGGYRVHGD-----------APLATPTKAEAEKPAPRRAPKRRQATIE 94
          H  TY L      GGY +H D           +PL TPT+  +E+P    +  +   T E
Sbjct: 14 HAGTYGLGDRKDQGGYTMHQDQEGDTDAGLKESPLQTPTEDGSEEPGSETSDAKSTPTAE 73

Query: 95 SDK 97
          +++
Sbjct: 74 AEE 76


>gi|239752975 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 145

 Score = 26.9 bits (58), Expect = 3.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 20 SAAAAVPATSPPTPGHYHVLYRGCGETQVGW 50
          SA   +   +PP P +    YRGC  T V W
Sbjct: 3  SAEGCLSLIAPPNPTYRKEDYRGCPWTSVTW 33


>gi|239747564 PREDICTED: hypothetical protein XP_002347660 [Homo
          sapiens]
          Length = 145

 Score = 26.9 bits (58), Expect = 3.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 20 SAAAAVPATSPPTPGHYHVLYRGCGETQVGW 50
          SA   +   +PP P +    YRGC  T V W
Sbjct: 3  SAEGCLSLIAPPNPTYRKEDYRGCPWTSVTW 33


>gi|239741438 PREDICTED: hypothetical protein XP_002342169 [Homo
          sapiens]
          Length = 145

 Score = 26.9 bits (58), Expect = 3.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 20 SAAAAVPATSPPTPGHYHVLYRGCGETQVGW 50
          SA   +   +PP P +    YRGC  T V W
Sbjct: 3  SAEGCLSLIAPPNPTYRKEDYRGCPWTSVTW 33


>gi|38201621 eukaryotic translation initiation factor 4 gamma, 1
           isoform 1 [Homo sapiens]
          Length = 1599

 Score = 26.9 bits (58), Expect = 3.9
 Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 14/109 (12%)

Query: 15  VPWEGSAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGGYRVHGDAPLATPTK 74
           +P +G +   VP    P        Y G   T+ G +   Y    G +     P      
Sbjct: 105 IPGQGRSTYVVPTQQYPVQPGAPGFYPGASPTEFGTYAGAYYPAQGVQ---QFPTGVAPA 161

Query: 75  AEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLEHRGRRLTPQKLAG 123
                  P+ APKR + TI           +IR     G+ +T + ++G
Sbjct: 162 PVLMNQPPQIAPKRERKTI-----------RIRDPNQGGKDITEEIMSG 199


>gi|38201627 eukaryotic translation initiation factor 4 gamma, 1
           isoform 2 [Homo sapiens]
          Length = 1512

 Score = 26.9 bits (58), Expect = 3.9
 Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 14/109 (12%)

Query: 15  VPWEGSAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGGYRVHGDAPLATPTK 74
           +P +G +   VP    P        Y G   T+ G +   Y    G +     P      
Sbjct: 18  IPGQGRSTYVVPTQQYPVQPGAPGFYPGASPTEFGTYAGAYYPAQGVQ---QFPTGVAPA 74

Query: 75  AEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLEHRGRRLTPQKLAG 123
                  P+ APKR + TI           +IR     G+ +T + ++G
Sbjct: 75  PVLMNQPPQIAPKRERKTI-----------RIRDPNQGGKDITEEIMSG 112


>gi|38201623 eukaryotic translation initiation factor 4 gamma, 1
           isoform 1 [Homo sapiens]
          Length = 1599

 Score = 26.9 bits (58), Expect = 3.9
 Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 14/109 (12%)

Query: 15  VPWEGSAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGGYRVHGDAPLATPTK 74
           +P +G +   VP    P        Y G   T+ G +   Y    G +     P      
Sbjct: 105 IPGQGRSTYVVPTQQYPVQPGAPGFYPGASPTEFGTYAGAYYPAQGVQ---QFPTGVAPA 161

Query: 75  AEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLEHRGRRLTPQKLAG 123
                  P+ APKR + TI           +IR     G+ +T + ++G
Sbjct: 162 PVLMNQPPQIAPKRERKTI-----------RIRDPNQGGKDITEEIMSG 199


>gi|19923855 SYAP1 protein [Homo sapiens]
          Length = 352

 Score = 26.9 bits (58), Expect = 3.9
 Identities = 15/51 (29%), Positives = 21/51 (41%)

Query: 50  WHGETYCLVGGYRVHGDAPLATPTKAEAEKPAPRRAPKRRQATIESDKDLG 100
           W G    + GG + +GDAP   P++  AE           Q  +   KD G
Sbjct: 8   WLGLQQPVAGGGQPNGDAPPEQPSETVAESAEEELQQAGDQELLHQAKDFG 58


>gi|75677365 dynein heavy chain domain 3 [Homo sapiens]
          Length = 4427

 Score = 26.9 bits (58), Expect = 3.9
 Identities = 13/58 (22%), Positives = 24/58 (41%)

Query: 42 GCGETQVGWHGETYCLVGGYRVHGDAPLATPTKAEAEKPAPRRAPKRRQATIESDKDL 99
          G G +Q  W G         +  G+AP  +  + +AE P     P+      +S++ +
Sbjct: 13 GRGSSQASWSGRATRAAVATQEQGNAPAVSEPELQAELPKEEPEPRLEGPQAQSEESV 70


>gi|39812378 RAN binding protein 9 [Homo sapiens]
          Length = 729

 Score = 26.6 bits (57), Expect = 5.1
 Identities = 33/114 (28%), Positives = 42/114 (36%), Gaps = 18/114 (15%)

Query: 21  AAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGGYRVHGDAPLATPTKAEAEKP 80
           A+AA PA+ PP P     L  G G         T  LV G       P       E EK 
Sbjct: 93  ASAAAPASGPPAPPG---LAAGPGP---AGGAPTPALVAGSSAAAPFPHGDSALNEQEKE 146

Query: 81  APRRAPKRRQATIESDKDLGCS-SPKIR-----------RLEHRGRRLTPQKLA 122
             RR  +   A  E +  L  S SPK +           R+ ++G   TP+  A
Sbjct: 147 LQRRLKRLYPAVDEQETPLPRSWSPKDKFSYIGLSQNNLRVHYKGHGKTPKDAA 200


>gi|55741677 SET domain containing 1A [Homo sapiens]
          Length = 1707

 Score = 26.6 bits (57), Expect = 5.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 66   DAPLATPTKAEAEKPAPRRAPKRRQATIES 95
            + P ATP +A+   PA R+AP+  + TI +
Sbjct: 1180 EPPPATPPQAKFPGPASRKAPRGVERTIRN 1209


>gi|19111150 angiomotin isoform 2 [Homo sapiens]
          Length = 675

 Score = 26.6 bits (57), Expect = 5.1
 Identities = 31/102 (30%), Positives = 41/102 (40%), Gaps = 8/102 (7%)

Query: 9   VSNMSSVPWEGSAAAAV---PATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGGYRVHG 65
           V++ ++V    +AAAAV   PA   P P    V        Q     +T        V  
Sbjct: 544 VASAAAVAPSAAAAAAVQVAPAAPAPVPAPALVPVPAPAAAQASAPAQTQAPTSAPAVAP 603

Query: 66  D-APLATPTKAEAEKPA-PRRAPKRRQATIESDKDLGCSSPK 105
             AP  TP  A+AE PA P   P   + +I S   L C+  K
Sbjct: 604 TPAPTPTPAVAQAEVPASPATGPGPHRLSIPS---LTCNPDK 642


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.133    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,963,513
Number of Sequences: 37866
Number of extensions: 295858
Number of successful extensions: 1390
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1307
Number of HSP's gapped (non-prelim): 114
length of query: 123
length of database: 18,247,518
effective HSP length: 89
effective length of query: 34
effective length of database: 14,877,444
effective search space: 505833096
effective search space used: 505833096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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