Guide to the Human Genome
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Name: LOC100288349 Sequence: fasta or formatted (145aa) NCBI GI: 239741438
Description:

PREDICTED: hypothetical protein XP_002342169

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         15           2
 C cysteine            4.1          6           1
 D aspartate           6.9         10           1
 E glutamate           6.9         10           1
 F phenylalanine       0.0          0           0
 G glycine            10.3         15           2
 H histidine           4.8          7           2
 I isoleucine          2.8          4           1
 K lysine              3.4          5           1
 L leucine            11.0         16           2
 M methionine          0.7          1           1
 N asparagine          1.4          2           1
 P proline             6.9         10           2
 Q glutamine           5.5          8           1
 R arginine            3.4          5           1
 S serine              5.5          8           2
 T threonine           3.4          5           1
 V valine              9.0         13           2
 W tryptophan          2.1          3           1
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342169 
LOC100293233          1.000   PREDICTED: hypothetical protein 
LOC100291125          1.000   PREDICTED: hypothetical protein XP_002347660 
LOC100292830          0.025   PREDICTED: hypothetical protein 
VCX3B                 0.025   variable charge, X-linked 3B 
VCY1B                 0.025   variable charge, Y-linked 1B 
VCY                   0.025   variable charge, Y-linked 
VCX3A                 0.018   variable charge, X-linked 3A 
ATP2A3                0.018   ATPase, Ca++ transporting, ubiquitous isoform d [Hom...
LOC100133944          0.018   PREDICTED: similar to Fc fragment of IgG binding pr...
LOC100290309          0.018   PREDICTED: hypothetical protein XP_002348012 
FCGBP                 0.018   Fc fragment of IgG binding protein 
LOC100291218          0.014   PREDICTED: hypothetical protein XP_002347361 
SEC16A                0.011   SEC16 homolog A 
WDFY3                 0.011   WD repeat and FYVE domain containing 3 isoform 3 [Ho...
WDFY3                 0.011   WD repeat and FYVE domain containing 3 isoform 1 [Ho...
VCX                   0.011   variable charge, X chromosome 
VCX2                  0.011   variable charge, X-linked 2 
LOC100287030          0.011   PREDICTED: hypothetical protein XP_002343628 
LOC100131303          0.007   PREDICTED: hypothetical protein LOC100131303 
LOC100131303          0.007   PREDICTED: hypothetical protein LOC100131303 
LOC100131303          0.007   PREDICTED: hypothetical protein LOC100131303 
LOC100293182          0.007   PREDICTED: hypothetical protein 
MAP3K7IP3             0.007   mitogen-activated protein kinase kinase kinase 7 int...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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