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Search of human proteins with 169210192
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169210192 PREDICTED: hypothetical protein [Homo sapiens]
(194 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169210192 PREDICTED: hypothetical protein [Homo sapiens] 410 e-115
gi|113425957 PREDICTED: hypothetical protein [Homo sapiens] 401 e-112
gi|169210554 PREDICTED: FLJ44904 protein [Homo sapiens] 234 4e-62
gi|33286436 gametogenetin [Homo sapiens] 45 5e-05
gi|56118221 amyloid beta (A4) precursor protein-binding, family ... 44 7e-05
gi|13376335 hypothetical protein LOC79946 [Homo sapiens] 42 3e-04
gi|119395760 diaphanous 1 isoform 2 [Homo sapiens] 41 6e-04
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens] 41 6e-04
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens] 41 7e-04
gi|153792074 proline rich 12 [Homo sapiens] 40 0.001
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 39 0.002
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 39 0.002
gi|150170729 microtubule associated serine/threonine kinase 3 [H... 39 0.002
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 39 0.003
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 39 0.003
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 39 0.003
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens] 39 0.003
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 39 0.003
gi|95147559 ankyrin repeat domain 43 [Homo sapiens] 39 0.003
gi|126090909 engrailed homeobox 1 [Homo sapiens] 39 0.004
gi|19924097 synapsin I isoform Ib [Homo sapiens] 39 0.004
gi|239754458 PREDICTED: hypothetical protein [Homo sapiens] 38 0.005
gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo ... 38 0.005
gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo ... 38 0.005
gi|239742481 PREDICTED: hypothetical protein XP_002342546 [Homo ... 38 0.005
gi|19924099 synapsin I isoform Ia [Homo sapiens] 38 0.005
gi|21265052 ADAM metallopeptidase with thrombospondin type 1 mot... 38 0.005
gi|110611167 ADAM metallopeptidase with thrombospondin type 1 mo... 38 0.005
gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens] 37 0.008
gi|118402590 myosin XV [Homo sapiens] 37 0.011
>gi|169210192 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 410 bits (1054), Expect = e-115
Identities = 194/194 (100%), Positives = 194/194 (100%)
Query: 1 MLLRLCKVRTWRPAPSSARSQGVQDEIKADPGLARLLLTGSWGPFQEEPQDTENAQSPGC 60
MLLRLCKVRTWRPAPSSARSQGVQDEIKADPGLARLLLTGSWGPFQEEPQDTENAQSPGC
Sbjct: 1 MLLRLCKVRTWRPAPSSARSQGVQDEIKADPGLARLLLTGSWGPFQEEPQDTENAQSPGC 60
Query: 61 PRQARGPGGGGNPGDTVLTPLSAPADPNTHPPAPGTQPALPPLARPCRVSTLCGSRLGRR 120
PRQARGPGGGGNPGDTVLTPLSAPADPNTHPPAPGTQPALPPLARPCRVSTLCGSRLGRR
Sbjct: 61 PRQARGPGGGGNPGDTVLTPLSAPADPNTHPPAPGTQPALPPLARPCRVSTLCGSRLGRR 120
Query: 121 RAGEGPRPGRALPFLSLPCQAVPAPTLTPTPPDPPRAGRKCNERRAVSLVLLGWSQGPDP 180
RAGEGPRPGRALPFLSLPCQAVPAPTLTPTPPDPPRAGRKCNERRAVSLVLLGWSQGPDP
Sbjct: 121 RAGEGPRPGRALPFLSLPCQAVPAPTLTPTPPDPPRAGRKCNERRAVSLVLLGWSQGPDP 180
Query: 181 IVNLTEKEMGSERR 194
IVNLTEKEMGSERR
Sbjct: 181 IVNLTEKEMGSERR 194
>gi|113425957 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 401 bits (1031), Expect = e-112
Identities = 191/194 (98%), Positives = 191/194 (98%)
Query: 1 MLLRLCKVRTWRPAPSSARSQGVQDEIKADPGLARLLLTGSWGPFQEEPQDTENAQSPGC 60
MLLRLCKVRTW PAPS ARSQGVQDEIKADPGLARLLLTGSWGPFQEEPQDTENAQSPG
Sbjct: 1 MLLRLCKVRTWCPAPSCARSQGVQDEIKADPGLARLLLTGSWGPFQEEPQDTENAQSPGS 60
Query: 61 PRQARGPGGGGNPGDTVLTPLSAPADPNTHPPAPGTQPALPPLARPCRVSTLCGSRLGRR 120
PRQARGPGGGGNPGDTVLTPLSAPADPNTHPPAPGTQPALPPLARPCRVSTLCGSRLGRR
Sbjct: 61 PRQARGPGGGGNPGDTVLTPLSAPADPNTHPPAPGTQPALPPLARPCRVSTLCGSRLGRR 120
Query: 121 RAGEGPRPGRALPFLSLPCQAVPAPTLTPTPPDPPRAGRKCNERRAVSLVLLGWSQGPDP 180
RAGEGPRPGRALPFLSLPCQAVPAPTLTPTPPDPPRAGRKCNERRAVSLVLLGWSQGPDP
Sbjct: 121 RAGEGPRPGRALPFLSLPCQAVPAPTLTPTPPDPPRAGRKCNERRAVSLVLLGWSQGPDP 180
Query: 181 IVNLTEKEMGSERR 194
IVNLTEKEMGSERR
Sbjct: 181 IVNLTEKEMGSERR 194
>gi|169210554 PREDICTED: FLJ44904 protein [Homo sapiens]
Length = 196
Score = 234 bits (596), Expect = 4e-62
Identities = 139/208 (66%), Positives = 146/208 (70%), Gaps = 26/208 (12%)
Query: 1 MLLRLCKVRTWRPAPSSARSQGVQDEIKADPGLARLLLTGSWGPFQEEPQDTENAQS--- 57
MLLRLCKVRT RPAPS ARSQGVQDEIKADPGLARLLLTGSWGPFQEEPQDTENAQS
Sbjct: 1 MLLRLCKVRTRRPAPSCARSQGVQDEIKADPGLARLLLTGSWGPFQEEPQDTENAQSLSW 60
Query: 58 ---PGCPRQARG--PGGGGNPGDTVLTPLSAPADPNTHPPAPGTQPALPPLARPCRVSTL 112
PG ++ARG G P TV + P+ P T+PA P A P
Sbjct: 61 LSPPG--KRARGWRESRGHGPHPTVSAGRPQHSSPS---PRHTTRPAAPRQALP------ 109
Query: 113 CGSRLGRRRAGE-----GPRPGRALPFLSLPCQAVPAPTLTP-TPPDPPRAGRKCNERRA 166
G RR+ GE G + A PFLSLPCQAVPAPTLTP TPPDPPRAGRKCNE RA
Sbjct: 110 -GVHPLRRQVGEETCWGGAQAWAARPFLSLPCQAVPAPTLTPTTPPDPPRAGRKCNECRA 168
Query: 167 VSLVLLGWSQGPDPIVNLTEKEMGSERR 194
VSLVLLGWSQGPDPIVNLTEKE GSERR
Sbjct: 169 VSLVLLGWSQGPDPIVNLTEKETGSERR 196
>gi|33286436 gametogenetin [Homo sapiens]
Length = 652
Score = 44.7 bits (104), Expect = 5e-05
Identities = 42/136 (30%), Positives = 50/136 (36%), Gaps = 26/136 (19%)
Query: 38 LTGSWGPFQEEPQDTENAQSPGCPRQA---------RGPGGG-----GNPGDTVLTPLSA 83
L+G WG P+ +A P P A P G G PG L PL
Sbjct: 383 LSGPWGSPPPPPEQIHSAPGPRRPAPALLAPPTFIFPAPTNGEPMRPGPPGLQELPPLPP 442
Query: 84 PADPNTHPPAPGTQPALPPLARPCRVSTLCGSRLGRRRAGEGPRPGRALPFLSLPCQAVP 143
P P T P P QP P+A P LG + + P ALP +L P
Sbjct: 443 PTPPPTLQP-PALQPTPLPVAPPLTPG------LGHKESALAPTAAPALP-PALAADQAP 494
Query: 144 APTLTPTP----PDPP 155
AP+ P P P PP
Sbjct: 495 APSPAPAPTVAEPSPP 510
>gi|56118221 amyloid beta (A4) precursor protein-binding, family B,
member 1 interacting protein [Homo sapiens]
Length = 666
Score = 44.3 bits (103), Expect = 7e-05
Identities = 36/114 (31%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
Query: 50 QDTENAQSPGCPRQARGPGGGGNPG--DTVLTPLSAPA---DPNTHPPAPGTQPALPPLA 104
+ ++ + SP P +A+G GGGG P D L P P DP PP P P
Sbjct: 524 RSSDTSGSPATPLKAKGTGGGGLPAPPDDFLPPPPPPPPLDDPELPPPPPDFMEPPPDFV 583
Query: 105 RPCRVS--TLCGSRLGRRRAGEGPRPGRALPFLSLPCQAVPAPTLTPTPPDPPR 156
P S + GS L P P A +P A P P + PP PP+
Sbjct: 584 PPPPPSYAGIAGSEL-----PPPPPPPPAPAPAPVPDSARPPPAVAKRPPVPPK 632
>gi|13376335 hypothetical protein LOC79946 [Homo sapiens]
Length = 257
Score = 42.0 bits (97), Expect = 3e-04
Identities = 47/158 (29%), Positives = 51/158 (32%), Gaps = 23/158 (14%)
Query: 41 SWGPFQEEPQD--TENAQSPGCPRQARGPGGGGNPGDTVLTPLSAPADPN----THPPAP 94
+W P PQ T +A PG +A G G T P P P P
Sbjct: 71 TWPPLCCYPQSRPTASAAGPGACMRASGRPHGNTTASTAPPRHPRPRRPGGPALRPTPRP 130
Query: 95 GTQPALPPLARPCRVSTLC----GSRLGRRRAGEGPR------PGRALPFLSL------P 138
PA PP +R CR R GRR P R P S
Sbjct: 131 CAGPAPPPASRDCRCRRPRRWPRAGRRGRRAGACKPSCAGAAWSARGAPLCSYRTSCAGS 190
Query: 139 CQAVPAPTLTPTPPDPPRAGRK-CNERRAVSLVLLGWS 175
C A APT PT P A C RRA S WS
Sbjct: 191 CGARTAPTPAPTCASPSAAASSCCRRRRACSSPTTAWS 228
>gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]
Length = 1263
Score = 41.2 bits (95), Expect = 6e-04
Identities = 41/140 (29%), Positives = 54/140 (38%), Gaps = 19/140 (13%)
Query: 38 LTGSWGPFQEEPQDTENAQS----------PGCPRQARGPGGGGNPGD--TVLTPLSAPA 85
LTG +E +D + + P P +A P PGD T++ P AP
Sbjct: 535 LTGEVAKLTKELEDAKKEMASLSAAAITVPPSVPSRAPVPPAPPLPGDSGTIIPPPPAPG 594
Query: 86 DPNTHPPAPGTQPALPPLARPCRVSTLCGSRLGRRRAGEGPRPGRAL--PFLSLP-CQAV 142
D T PP P P PPL +S+ G + P G A P LP +
Sbjct: 595 DSTTPPPPPPPPPPPPPLPGGVCISSPPSLPGGTAISPPPPLSGDATIPPPPPLPEGVGI 654
Query: 143 PAPTLTP----TPPDPPRAG 158
P+P+ P PP PP G
Sbjct: 655 PSPSSLPGGTAIPPPPPLPG 674
>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
Length = 1272
Score = 41.2 bits (95), Expect = 6e-04
Identities = 41/140 (29%), Positives = 54/140 (38%), Gaps = 19/140 (13%)
Query: 38 LTGSWGPFQEEPQDTENAQS----------PGCPRQARGPGGGGNPGD--TVLTPLSAPA 85
LTG +E +D + + P P +A P PGD T++ P AP
Sbjct: 544 LTGEVAKLTKELEDAKKEMASLSAAAITVPPSVPSRAPVPPAPPLPGDSGTIIPPPPAPG 603
Query: 86 DPNTHPPAPGTQPALPPLARPCRVSTLCGSRLGRRRAGEGPRPGRAL--PFLSLP-CQAV 142
D T PP P P PPL +S+ G + P G A P LP +
Sbjct: 604 DSTTPPPPPPPPPPPPPLPGGVCISSPPSLPGGTAISPPPPLSGDATIPPPPPLPEGVGI 663
Query: 143 PAPTLTP----TPPDPPRAG 158
P+P+ P PP PP G
Sbjct: 664 PSPSSLPGGTAIPPPPPLPG 683
>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 40.8 bits (94), Expect = 7e-04
Identities = 37/125 (29%), Positives = 44/125 (35%), Gaps = 37/125 (29%)
Query: 44 PFQEEPQDTENAQS-PGC-----PRQARGPGGGGNPGDTVLTPLSAPADPNTHPPAPGTQ 97
P + P A+S PGC P ++R PG G P DP P PG
Sbjct: 150 PLRPPPGTRPRAKSRPGCRSSPFPARSRTPGEAGPP----------RGDPRPRAPRPGDH 199
Query: 98 PALPPLAR--PCRVSTLCGSRLGRRRAGEGPRPGRALPFLSLPCQAVPAPTLTPTPPDPP 155
P P R P G R G+R AG+G P P PP PP
Sbjct: 200 PRRSPALRETPSLSPPSPGRRNGKRAAGKGTTP-------------------QPQPPPPP 240
Query: 156 RAGRK 160
A R+
Sbjct: 241 CATRR 245
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 40.0 bits (92), Expect = 0.001
Identities = 36/114 (31%), Positives = 38/114 (33%), Gaps = 30/114 (26%)
Query: 49 PQDTENAQSPGCPRQARGPGGGGNPG-------DTVLTPLSAPADPNTHPPAPGTQPALP 101
P+DT P A PG PG T PL P T PPAP QP P
Sbjct: 1413 PKDTSTPDGPPLAPAAAVPGPPPLPGLPSANSNGTPEPPLLEEKPPPTPPPAPTPQPQPP 1472
Query: 102 PLARPCRVSTLCGSRLGRRRAGEGPRPGRALPFLSLPCQAVPAPTLTPTPPDPP 155
P P P ALP S P P P+ P PP PP
Sbjct: 1473 P---------------------PPPPPQPALP--SPPPLVAPTPSSPPPPPLPP 1503
Score = 33.5 bits (75), Expect = 0.12
Identities = 25/68 (36%), Positives = 26/68 (38%), Gaps = 13/68 (19%)
Query: 101 PPLARPCRVSTLCGSRLGRRRAGEGPRPGRALPFLSL-------------PCQAVPAPTL 147
PPLA P ST G L A GP P LP + P PAPT
Sbjct: 1408 PPLAGPKDTSTPDGPPLAPAAAVPGPPPLPGLPSANSNGTPEPPLLEEKPPPTPPPAPTP 1467
Query: 148 TPTPPDPP 155
P PP PP
Sbjct: 1468 QPQPPPPP 1475
Score = 28.9 bits (63), Expect = 2.9
Identities = 29/104 (27%), Positives = 33/104 (31%), Gaps = 21/104 (20%)
Query: 69 GGGNPGDTVLTPLSAPADPNTHPPAPGT-QPALPPLARPCRVSTLCGSRLGRRRAGEG-- 125
GGG G L P P P PG P PP P + + L S A +
Sbjct: 210 GGGVLGPAGLGPAQTP------PYRPGPPDPPPPPRHLPTQFNLLASSSAAAAAAEQSSP 263
Query: 126 ------------PRPGRALPFLSLPCQAVPAPTLTPTPPDPPRA 157
P P RALP + P PP PP A
Sbjct: 264 QLYNFSGAAPGPPPPERALPRQDTVIKHYQRPASAQPPPPPPPA 307
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 39.3 bits (90), Expect = 0.002
Identities = 38/122 (31%), Positives = 52/122 (42%), Gaps = 15/122 (12%)
Query: 43 GPFQEEPQDTENAQSPGCPRQARGPGGGGN---PGDTVL----TPLSAPADPNTHPPAPG 95
GP + +E++ + P R P GG P L TPLS+PA + P A G
Sbjct: 195 GPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPA--RSGPSARG 252
Query: 96 TQ--PALPPLARPCRVSTLCGSRLGRRRAGEGPRPGRALPFLSLPCQAVPAPTLTPTPPD 153
T PA P +P + L ++ R P G P S P A P+P+ P+P
Sbjct: 253 TPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALG---PLSSSPL-ATPSPSAPPSPSA 308
Query: 154 PP 155
PP
Sbjct: 309 PP 310
Score = 35.4 bits (80), Expect = 0.031
Identities = 43/156 (27%), Positives = 60/156 (38%), Gaps = 23/156 (14%)
Query: 44 PFQEEPQDTENAQSPGC--PRQARGPGGGGNPGDTVLTPL-SAPADPNTHPPAPGTQPAL 100
P Q +P+ + + P PR+ P G + TP SAP P+ PP+ T P+
Sbjct: 260 PSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAPPSPSA-PPSLQTLPS- 317
Query: 101 PPLARPCRVSTLCGSRLGRRRAGEGPRP--------------GRALPFLSLPCQAVPAPT 146
PP P + +T GS + P P ALP L P +P
Sbjct: 318 PPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPP 377
Query: 147 LTPTPPDPPRAGRKCNERRAVSLVLLGWSQGPDPIV 182
L+P P+A AV L+ +S P P V
Sbjct: 378 LSPLATPSPQAPNAL----AVHLLQAPFSPPPSPPV 409
Score = 30.8 bits (68), Expect = 0.76
Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 11/88 (12%)
Query: 78 LTPLSAPAD---------PNTHPPAPGTQPALPPLARPC-RVSTLCGSRLGRRRAGEGPR 127
L+PL+ P P PP+P P L PLA P + L + P
Sbjct: 347 LSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPS 406
Query: 128 PGRALPFLSLPCQAVPAPTLTPTPPDPP 155
P PF S P +P+ TP PP
Sbjct: 407 PPVQAPF-SPPASPPVSPSATPPSQAPP 433
Score = 29.3 bits (64), Expect = 2.2
Identities = 25/84 (29%), Positives = 26/84 (30%), Gaps = 1/84 (1%)
Query: 73 PGDTVLTPLSAPADPNTHPPAPGTQPALPPLARPCRVSTLCGSRLGRRRAGEGPRPGRAL 132
P V P S PA P P A A P LA P P P
Sbjct: 405 PSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPP 464
Query: 133 PFLSLPCQ-AVPAPTLTPTPPDPP 155
P + P Q A P P P PP
Sbjct: 465 PLAAPPLQLAKPPPQAPPALATPP 488
Score = 28.1 bits (61), Expect = 4.9
Identities = 35/121 (28%), Positives = 46/121 (38%), Gaps = 21/121 (17%)
Query: 53 ENAQSPGCPRQARGPGGGGNPG-----DTVLTPLSAPADPN-THPPAPGTQPAL-----P 101
E+A G R +R P G +T P+S+P + T P P Q L
Sbjct: 72 ESAPRAGPTRTSRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEE 131
Query: 102 PLARPCRVSTLCGSRL--GRRRAGEGPRPGRALPFLSLPCQAV--------PAPTLTPTP 151
+AR S L G RR GP PG P ++ +A PAP+ P P
Sbjct: 132 TVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRP 191
Query: 152 P 152
P
Sbjct: 192 P 192
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 39.3 bits (90), Expect = 0.002
Identities = 40/116 (34%), Positives = 43/116 (37%), Gaps = 12/116 (10%)
Query: 43 GPFQEEPQDTENAQSPGCPRQARGPGGGGNPGDTVLTPLSAPADPNTHPPAPGTQPAL-- 100
GP EE + GC + G P L P P P PP P P L
Sbjct: 216 GPSGEEGLSPGGKRRRGCNSEQTGL-----PPGLPLPPPPLPPPPPPPPPPPPPLPGLAT 270
Query: 101 -PP--LARPCRVSTLCGSRLGRRRAGEGPRPGRALPFLSLP-CQAVPAPTLTPTPP 152
PP L +P STL G G R G P P R SLP PAP T PP
Sbjct: 271 SPPFQLTKPGLWSTLHGDAWGPERKGSAP-PERQEQRHSLPHPYPYPAPAYTAHPP 325
Score = 38.1 bits (87), Expect = 0.005
Identities = 34/129 (26%), Positives = 45/129 (34%), Gaps = 15/129 (11%)
Query: 45 FQEEPQDTENAQSPGCPRQARGPGGGGNPGDTVLTPLSAPA--------DPNTHPPAPGT 96
F QD+ +P P + G+ + P+S P DP PP+P
Sbjct: 533 FSVGTQDSHTPPTPPTPTTSSSNSNSGSHSSSPAGPVSFPPPPYLARSIDPLPRPPSPAQ 592
Query: 97 QPALPPLA------RPCRVSTLCGSRLGRRRAGEGPRPGRALPFLSLPCQAVPAPTLTPT 150
P PPL P S+ + G R E PRP + P P L+
Sbjct: 593 NPQDPPLVPLTLALPPAPPSSCHQNTSGSFRRPESPRPRVSFPKTPEVGPGPPPGPLSKA 652
Query: 151 P-PDPPRAG 158
P P PP G
Sbjct: 653 PQPVPPGVG 661
Score = 35.0 bits (79), Expect = 0.040
Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 94 PGTQPALPPLARPCRVSTLCG-------SRLGRRRAGEGPRPGRALPFLSLPCQAVPAPT 146
P + A PP+ +P + L G S G+RR G P L LP +P P
Sbjct: 196 PVKRAAEPPVVQPVPPAALSGPSGEEGLSPGGKRRRGCNSEQTGLPPGLPLPPPPLPPPP 255
Query: 147 LTPTPPDPPRAG 158
P PP PP G
Sbjct: 256 PPPPPPPPPLPG 267
Score = 30.0 bits (66), Expect = 1.3
Identities = 28/86 (32%), Positives = 32/86 (37%), Gaps = 24/86 (27%)
Query: 70 GGNPGDTVLTPLSAPADPNTHPPAPGTQPALPPLARPCRVSTLCGSRLGRRRAGEGPRPG 129
G G T L P SA P A G+ P + + ST G RRAGE P PG
Sbjct: 840 GPPSGATALPPTSAA------PSAQGSPQ--PSASSSSQFSTSGGPWARERRAGEEPVPG 891
Query: 130 RALPFLSLPCQAVPAPTLTPTPPDPP 155
+TPT P PP
Sbjct: 892 ----------------PMTPTQPPPP 901
Score = 28.9 bits (63), Expect = 2.9
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 8/46 (17%)
Query: 141 AVPAPTLTPTPPDPPRAGRKCNER--------RAVSLVLLGWSQGP 178
+ PAP+ PTPP G+K E RA L L S+GP
Sbjct: 1054 SAPAPSAQPTPPSASVPGKKAREEAPGPPGVSRADMLKLRSLSEGP 1099
>gi|150170729 microtubule associated serine/threonine kinase 3 [Homo
sapiens]
Length = 1309
Score = 39.3 bits (90), Expect = 0.002
Identities = 40/132 (30%), Positives = 54/132 (40%), Gaps = 14/132 (10%)
Query: 58 PGCPRQARGPGGGGNPGDTVLTPL-SAPADPNTHPPAPG---TQPALPPLARPCRVSTLC 113
PG P + P +P +P PAD PP+ + PA P A R S+L
Sbjct: 1107 PGSPTHSLSP----SPTTPCRSPAPDVPADTTASPPSASPSSSSPASPAAAGHTRPSSLH 1162
Query: 114 G--SRLGRRRAGEGPRPGRA-LPFLSLPCQAVPAP---TLTPTPPDPPRAGRKCNERRAV 167
G ++LG R G R + +P L C + AP + +P P PP R RR
Sbjct: 1163 GLAAKLGPPRPKTGRRKSTSSIPPSPLACPPISAPPPRSPSPLPGHPPAPARSPRLRRGQ 1222
Query: 168 SLVLLGWSQGPD 179
S LG + D
Sbjct: 1223 SADKLGTGERLD 1234
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 38.9 bits (89), Expect = 0.003
Identities = 36/117 (30%), Positives = 41/117 (35%), Gaps = 11/117 (9%)
Query: 40 GSWGPFQEEPQDTENAQSPGCPRQARGPGGGGNPGDTVLTPLSAPADPNTHPPAPGTQPA 99
G GP P + P P GP G PG + PL+ P + PP P P
Sbjct: 222 GPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPG 281
Query: 100 LPPLARPCRVSTLCGSRLGRRRAGEGPR-PGRALPFLSLPCQAVPAPTLTPTPPDPP 155
P +P LG G P PG P P Q P P P PP PP
Sbjct: 282 -QPFGQP---------PLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPP 328
Score = 35.8 bits (81), Expect = 0.023
Identities = 32/97 (32%), Positives = 33/97 (34%), Gaps = 25/97 (25%)
Query: 66 GPGGGGNP------GDT-VLTPLSAPADPNTHPPAPGTQPALPPLARPCRVSTLCGSRLG 118
GP G G P G T PL P P P P Q PPLA P
Sbjct: 219 GPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGP------------ 266
Query: 119 RRRAGEGPRPGRALPFLSLPCQAVPAPTLTPTPPDPP 155
G RP P + P Q P L P PP PP
Sbjct: 267 ---PNRGDRPP---PPVLFPGQPFGQPPLGPLPPGPP 297
Score = 29.3 bits (64), Expect = 2.2
Identities = 19/61 (31%), Positives = 21/61 (34%)
Query: 42 WGPFQEEPQDTENAQSPGCPRQARGPGGGGNPGDTVLTPLSAPADPNTHPPAPGTQPALP 101
+GP P + P P R PG G P P P PPAP PA
Sbjct: 303 YGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFF 362
Query: 102 P 102
P
Sbjct: 363 P 363
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 38.9 bits (89), Expect = 0.003
Identities = 40/117 (34%), Positives = 44/117 (37%), Gaps = 22/117 (18%)
Query: 45 FQEEPQDTENAQSPGCPRQARGPGGGGNPGDTVLTPLSAPADPN-THPPAPGTQPALPPL 103
FQ P N +P PRQ GG P S P P T PAP P PP
Sbjct: 170 FQRPPVYLGNKPTP--PRQEGSFGG---------RPKSQPPLPQETAAPAPQPGPTAPP- 217
Query: 104 ARPCRVSTLCGSRLGRRRAGEGPRPGRALPFLSLPCQAVPAPTLTPTPPDPP-RAGR 159
ARP + G R G GP LP +P P +P PP P R GR
Sbjct: 218 ARPPAYESREGPRGRAESRGSGPAQPAHLP--------LPGPAHSPAPPAPELREGR 266
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 38.9 bits (89), Expect = 0.003
Identities = 40/117 (34%), Positives = 44/117 (37%), Gaps = 22/117 (18%)
Query: 45 FQEEPQDTENAQSPGCPRQARGPGGGGNPGDTVLTPLSAPADPN-THPPAPGTQPALPPL 103
FQ P N +P PRQ GG P S P P T PAP P PP
Sbjct: 170 FQRPPVYLGNKPTP--PRQEGSFGG---------RPKSQPPLPQETAAPAPQPGPTAPP- 217
Query: 104 ARPCRVSTLCGSRLGRRRAGEGPRPGRALPFLSLPCQAVPAPTLTPTPPDPP-RAGR 159
ARP + G R G GP LP +P P +P PP P R GR
Sbjct: 218 ARPPAYESREGPRGRAESRGSGPAQPAHLP--------LPGPAHSPAPPAPELREGR 266
>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 38.9 bits (89), Expect = 0.003
Identities = 40/117 (34%), Positives = 44/117 (37%), Gaps = 22/117 (18%)
Query: 45 FQEEPQDTENAQSPGCPRQARGPGGGGNPGDTVLTPLSAPADPN-THPPAPGTQPALPPL 103
FQ P N +P PRQ GG P S P P T PAP P PP
Sbjct: 170 FQRPPVYLGNKPTP--PRQEGSFGG---------RPKSQPPLPQETAAPAPQPGPTAPP- 217
Query: 104 ARPCRVSTLCGSRLGRRRAGEGPRPGRALPFLSLPCQAVPAPTLTPTPPDPP-RAGR 159
ARP + G R G GP LP +P P +P PP P R GR
Sbjct: 218 ARPPAYESREGPRGRAESRGSGPAQPAHLP--------LPGPAHSPAPPAPELREGR 266
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 38.9 bits (89), Expect = 0.003
Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 71 GNPGDTVLTPLSAPADPNTH-PPAPGTQPALPPLARPCRVSTLCGSRLGRRRAGEGPRPG 129
GN + +AP PN PP P P PPL P S+ + L + GP
Sbjct: 153 GNTSEAHGAARTAPPRPNVPAPPPPTPPPPPPPLPPPLPSSSPIKTPLV---SPPGPLTK 209
Query: 130 RALPFLSLPCQAVPAPTLTPTPPDPP 155
LP ++ P P P P PP PP
Sbjct: 210 GNLPVVAPPVPCAPPPPPPPPPPTPP 235
Score = 27.3 bits (59), Expect = 8.4
Identities = 29/98 (29%), Positives = 35/98 (35%), Gaps = 12/98 (12%)
Query: 80 PLSAPADPNTHPPAPGTQPALPPLARPCRV--STLCGSRLGRRRAGEGPRPGRALPFLSL 137
P+ AP P PP P P PP P V +L P P LP
Sbjct: 213 PVVAPPVPCAPPPPPPPPPPTPPPLPPASVLSDKAVKPQLAPLHLPPIPPPLPLLPPCGY 272
Query: 138 P-CQAVPAPTL-------TPTPPDPPRAGRKCNERRAV 167
P +A PA P PP PP A C+ R ++
Sbjct: 273 PGLKAEPASPAQDAQEPPAPPPPLPPYA--SCSPRASL 308
>gi|95147559 ankyrin repeat domain 43 [Homo sapiens]
Length = 549
Score = 38.9 bits (89), Expect = 0.003
Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 11/105 (10%)
Query: 54 NAQSPGCPRQARGPGGGGNPGDTVLTPLSAPADPNTHPPAPGTQPALPPLARPC--RVST 111
+A +PG P R P PGD L P +P P P ++PA PP R +
Sbjct: 113 SASAPGAPPLVRVPRPVEPPGD-----LGLPTEPQDTPGGPASEPAQPPGERSADPPLPA 167
Query: 112 LCGSRLGRRRAGEGPRPGRALPFLSLPC----QAVPAPTLTPTPP 152
L ++ R + + P RA + PC A P P PP
Sbjct: 168 LELAQATERPSADAAPPPRAPSEAASPCSDPPDAEPGPGAAKGPP 212
>gi|126090909 engrailed homeobox 1 [Homo sapiens]
Length = 392
Score = 38.5 bits (88), Expect = 0.004
Identities = 30/93 (32%), Positives = 35/93 (37%), Gaps = 28/93 (30%)
Query: 12 RPAPSSARSQGVQDEIKADPGLARLLLTGSWGPFQEEPQDTENAQSPGCPRQARGPGGGG 71
+P P S R + A PG L L SPG A G G G
Sbjct: 5 QPEPKSQRDSALGAAAAATPGGLSLSL------------------SPG----ASGSSGSG 42
Query: 72 NPGDTVLTPLSAPADPNTHPPAPGTQPALPPLA 104
+ GD+V P P PP+P P LPPLA
Sbjct: 43 SDGDSV------PVSPQPAPPSPPAAPCLPPLA 69
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 38.5 bits (88), Expect = 0.004
Identities = 53/175 (30%), Positives = 62/175 (35%), Gaps = 37/175 (21%)
Query: 13 PAPSSARSQGVQDEIKADPGLARLLLTGSWGPFQEEPQDTENAQSPGCPRQARGPGG--- 69
P+P+SA Q G R Q A PG P AR P
Sbjct: 509 PSPTSAPQQPASQAAPPTQGQGR--------------QSRPVAGGPGAPPAARPPASPSP 554
Query: 70 ---GGNPGDTVLTPLSAPADPNTHPPAPGTQ-----PALPP-LARPCRVSTLCG--SRLG 118
G P T T +S PA P PG Q P PP A P R ++ G R G
Sbjct: 555 QRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTG 614
Query: 119 ------RRRAGEGPRPGRALPFLS-LPCQAVPAPTLTPTPPDPPRAGRKCNERRA 166
R +G GP GR P L+ P Q VP P T PP K + +A
Sbjct: 615 PPTTQQPRPSGPGP-AGRPKPQLAQKPSQDVPPPA-TAAAGGPPHPQLKASPAQA 667
>gi|239754458 PREDICTED: hypothetical protein [Homo sapiens]
Length = 180
Score = 38.1 bits (87), Expect = 0.005
Identities = 45/147 (30%), Positives = 52/147 (35%), Gaps = 16/147 (10%)
Query: 10 TWRPAPSSARSQGVQDEIKADPGLARLLLTGSWGP---FQEEPQDTENAQSPGCPRQARG 66
T P+P +A +Q PG S GP +E PQ G P Q R
Sbjct: 30 TLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGAPLQDRA 89
Query: 67 PGGGGNPGDTVLTPLSAPADPNTHPPAPGTQPALPPLARPCRVSTLCGSRLGRRRAGEGP 126
P PG A T PAP PP RV+ G G R+ E P
Sbjct: 90 PSAHV-PGS---------ASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSRE-P 138
Query: 127 RP--GRALPFLSLPCQAVPAPTLTPTP 151
RP G P + P A P P TP P
Sbjct: 139 RPQDGTPPPVDTPPRTARPRPAFTPRP 165
>gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo
sapiens]
Length = 180
Score = 38.1 bits (87), Expect = 0.005
Identities = 45/147 (30%), Positives = 52/147 (35%), Gaps = 16/147 (10%)
Query: 10 TWRPAPSSARSQGVQDEIKADPGLARLLLTGSWGP---FQEEPQDTENAQSPGCPRQARG 66
T P+P +A +Q PG S GP +E PQ G P Q R
Sbjct: 30 TLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGAPLQDRA 89
Query: 67 PGGGGNPGDTVLTPLSAPADPNTHPPAPGTQPALPPLARPCRVSTLCGSRLGRRRAGEGP 126
P PG A T PAP PP RV+ G G R+ E P
Sbjct: 90 PSAHV-PGS---------ASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSRE-P 138
Query: 127 RP--GRALPFLSLPCQAVPAPTLTPTP 151
RP G P + P A P P TP P
Sbjct: 139 RPQDGTPPPVDTPPRTARPRPAFTPRP 165
>gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo
sapiens]
Length = 180
Score = 38.1 bits (87), Expect = 0.005
Identities = 45/147 (30%), Positives = 52/147 (35%), Gaps = 16/147 (10%)
Query: 10 TWRPAPSSARSQGVQDEIKADPGLARLLLTGSWGP---FQEEPQDTENAQSPGCPRQARG 66
T P+P +A +Q PG S GP +E PQ G P Q R
Sbjct: 30 TLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGAPLQDRA 89
Query: 67 PGGGGNPGDTVLTPLSAPADPNTHPPAPGTQPALPPLARPCRVSTLCGSRLGRRRAGEGP 126
P PG A T PAP PP RV+ G G R+ E P
Sbjct: 90 PSAHV-PGS---------ASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSRE-P 138
Query: 127 RP--GRALPFLSLPCQAVPAPTLTPTP 151
RP G P + P A P P TP P
Sbjct: 139 RPQDGTPPPVDTPPRTARPRPAFTPRP 165
>gi|239742481 PREDICTED: hypothetical protein XP_002342546 [Homo
sapiens]
Length = 359
Score = 38.1 bits (87), Expect = 0.005
Identities = 43/135 (31%), Positives = 50/135 (37%), Gaps = 21/135 (15%)
Query: 50 QDTENAQSPGCPRQARGPGGGGNPGDTVLTPLSAPADPNTHPPAPGTQPALPPLARPCRV 109
Q + SP C R A P + P+S PADP P +P PP A R
Sbjct: 72 QRDHSQSSPPCRRLASYSFWSSAPWRELTLPVS-PADPAAPPSSPHAPTRPPPQAVQPRP 130
Query: 110 STLCGSRLGRRRAGEGPRPG-RALPFLSLPCQAVPAPTLTPTPPD-----PPRAGRKCNE 163
S P PG ALP SLP A P PP PR R +
Sbjct: 131 SE--------------PTPGSEALPPGSLPEAAQPPSRPAAQPPSRPAFRSPRPVRGPHP 176
Query: 164 RRAVSLVLLGWSQGP 178
RRAV + +L Q P
Sbjct: 177 RRAVVVAVLFGVQAP 191
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 38.1 bits (87), Expect = 0.005
Identities = 51/165 (30%), Positives = 58/165 (35%), Gaps = 38/165 (23%)
Query: 13 PAPSSARSQGVQDEIKADPGLARLLLTGSWGPFQEEPQDTENAQSPGCPRQARGPGG--- 69
P+P+SA Q G R Q A PG P AR P
Sbjct: 509 PSPTSAPQQPASQAAPPTQGQGR--------------QSRPVAGGPGAPPAARPPASPSP 554
Query: 70 ---GGNPGDTVLTPLSAPADPNTHPPAPGTQ-----PALPP-LARPCRVSTLCG--SRLG 118
G P T T +S PA P PG Q P PP A P R ++ G R G
Sbjct: 555 QRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTG 614
Query: 119 ------RRRAGEGPRPGRALPFLS-LPCQAVPAPTLTPT--PPDP 154
R +G GP GR P L+ P Q VP P PP P
Sbjct: 615 PPTTQQPRPSGPGP-AGRPKPQLAQKPSQDVPPPATAAAGGPPHP 658
>gi|21265052 ADAM metallopeptidase with thrombospondin type 1 motif,
14 isoform 2 preproprotein [Homo sapiens]
Length = 1223
Score = 38.1 bits (87), Expect = 0.005
Identities = 35/123 (28%), Positives = 45/123 (36%), Gaps = 18/123 (14%)
Query: 60 CPRQARGPGGGGNPGDTVLTPLSAPADPNTHPPAPGTQPALPPLARPCRVSTLCGSRLGR 119
C ++A GP G +PG T L P S P P P P A PP G+
Sbjct: 1093 CIKKASGPNPGPDPGPTSLPPFSTPGSPLPGPQDP-ADAAEPP---------------GK 1136
Query: 120 RRAGEGPRPGRALPFLSLPCQAVPAPTLTPTPPDPPRAGRKCNERRAVSLVL-LGWSQGP 178
E + GRA + P T P P+ P G + L GW+Q P
Sbjct: 1137 PTGSEDHQHGRATQLPGALDTSSPG-TQHPFAPETPIPGASWSISPTTPGGLPWGWTQTP 1195
Query: 179 DPI 181
P+
Sbjct: 1196 TPV 1198
>gi|110611167 ADAM metallopeptidase with thrombospondin type 1 motif,
14 isoform 1 preproprotein [Homo sapiens]
Length = 1226
Score = 38.1 bits (87), Expect = 0.005
Identities = 35/123 (28%), Positives = 45/123 (36%), Gaps = 18/123 (14%)
Query: 60 CPRQARGPGGGGNPGDTVLTPLSAPADPNTHPPAPGTQPALPPLARPCRVSTLCGSRLGR 119
C ++A GP G +PG T L P S P P P P A PP G+
Sbjct: 1096 CIKKASGPNPGPDPGPTSLPPFSTPGSPLPGPQDP-ADAAEPP---------------GK 1139
Query: 120 RRAGEGPRPGRALPFLSLPCQAVPAPTLTPTPPDPPRAGRKCNERRAVSLVL-LGWSQGP 178
E + GRA + P T P P+ P G + L GW+Q P
Sbjct: 1140 PTGSEDHQHGRATQLPGALDTSSPG-TQHPFAPETPIPGASWSISPTTPGGLPWGWTQTP 1198
Query: 179 DPI 181
P+
Sbjct: 1199 TPV 1201
>gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens]
Length = 464
Score = 37.4 bits (85), Expect = 0.008
Identities = 36/123 (29%), Positives = 43/123 (34%), Gaps = 19/123 (15%)
Query: 44 PFQEEPQDTENAQSPGCPRQARGPGGGGNPGDTVLTPLSA---PADPNTHPPAPGTQPAL 100
P P P P Q P G +P V+ P ++ P P HPPAPG P
Sbjct: 260 PLPPMPPTGPAPSGPPGPPQLPPPAPGVHPPAPVVHPPASGVHPPAPGVHPPAPGVHPPA 319
Query: 101 PPLARPCRVSTLCGSRLGRRRAGEGPRPGRALPFLSLPCQAV--PAPTLTPTPP---DPP 155
P + P G G P P + P V PAP + P P PP
Sbjct: 320 PGVHPPTS---------GVHPPAPGVHP--PAPGVHPPAPGVHPPAPGVHPPAPGVHPPP 368
Query: 156 RAG 158
AG
Sbjct: 369 SAG 371
Score = 32.0 bits (71), Expect = 0.34
Identities = 26/86 (30%), Positives = 30/86 (34%), Gaps = 3/86 (3%)
Query: 73 PGDTVLTPLSAPADPNTHPPAPGTQPALPPL-ARPCRVSTLCGSRLGRRRAGEGPRPGRA 131
PG P P P HPPAPG P P + +P V + PG
Sbjct: 377 PGVHPAAPAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHPSAPGVHPQPPGVHPSNPGVH 436
Query: 132 LPFLSLPCQAVPAPTLTP--TPPDPP 155
P P P P+ P PP PP
Sbjct: 437 PPTPMPPMLRPPLPSEGPGNIPPPPP 462
Score = 31.6 bits (70), Expect = 0.44
Identities = 23/80 (28%), Positives = 25/80 (31%), Gaps = 8/80 (10%)
Query: 73 PGDTVLTPLSAPADPNTHPPAPGTQPALPPLARPCRVSTLCGSRLGRRRAGEGPRPGRAL 132
PG P P P HPPAPG P P + P G G P
Sbjct: 334 PGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPP--------PSAGVHPQAPGVHPAAPA 385
Query: 133 PFLSLPCQAVPAPTLTPTPP 152
P PAP + P P
Sbjct: 386 VHPQAPGVHPPAPGMHPQAP 405
Score = 27.7 bits (60), Expect = 6.4
Identities = 18/58 (31%), Positives = 21/58 (36%)
Query: 44 PFQEEPQDTENAQSPGCPRQARGPGGGGNPGDTVLTPLSAPADPNTHPPAPGTQPALP 101
P P + +PG A G + G P PA P HP APG P P
Sbjct: 341 PGVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVHPQAPGVHPAAPAVHPQAPGVHPPAP 398
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 37.0 bits (84), Expect = 0.011
Identities = 33/111 (29%), Positives = 42/111 (37%), Gaps = 18/111 (16%)
Query: 61 PRQARGPGGGGNPGDTVLTPLSAPADPNTHPPAPGTQPALPPLARPCRVSTLCGSRLGRR 120
P + P +PG +PL+ P+ + P P LPP RP R
Sbjct: 772 PLASPQPSLRSSPGLGYCSPLAPPSPQLSLRTGPFQPPFLPPARRP-------------R 818
Query: 121 RAGEGPRPGRALPFLSLPCQAVPAPTLTPTPPDPPRAGRKCNERRAVSLVL 171
E P P RA L P +P +P PP PP C+ R SL L
Sbjct: 819 SLQESPAPRRAAGRLGPPGSPLPG---SPRPPSPPLG--LCHSPRRSSLNL 864
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.136 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,726,880
Number of Sequences: 37866
Number of extensions: 819321
Number of successful extensions: 7309
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 817
Number of HSP's that attempted gapping in prelim test: 5217
Number of HSP's gapped (non-prelim): 2444
length of query: 194
length of database: 18,247,518
effective HSP length: 97
effective length of query: 97
effective length of database: 14,574,516
effective search space: 1413728052
effective search space used: 1413728052
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.