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Search of human proteins with 169209989
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169209989 PREDICTED: hypothetical protein LOC100131303 [Homo
sapiens]
(123 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169210300 PREDICTED: hypothetical protein LOC100131303 [Homo ... 260 2e-70
gi|169210470 PREDICTED: hypothetical protein LOC100131303 [Homo ... 260 2e-70
gi|169209989 PREDICTED: hypothetical protein LOC100131303 [Homo ... 260 2e-70
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 32 0.16
gi|169177031 PREDICTED: similar to hCG30082, partial [Homo sapiens] 31 0.27
gi|4505531 oxysterol binding protein [Homo sapiens] 30 0.46
gi|148612809 WNK lysine deficient protein kinase 1 [Homo sapiens] 30 0.60
gi|239756547 PREDICTED: hypothetical protein [Homo sapiens] 30 0.60
gi|71143119 signal-induced proliferation-associated 1 like 3 [Ho... 29 1.0
gi|19924103 synapsin II isoform IIa [Homo sapiens] 28 1.3
gi|89941479 hypothetical protein LOC148137 [Homo sapiens] 28 1.3
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap... 28 2.3
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap... 28 2.3
gi|22779860 forkhead box L1 [Homo sapiens] 28 2.3
gi|157739945 tetratricopeptide repeat, ankyrin repeat and coiled... 28 2.3
gi|157266264 pleckstrin homology-like domain, family B, member 3... 28 2.3
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 27 3.0
gi|151301137 AT-hook transcription factor [Homo sapiens] 27 3.0
gi|178557736 microtubule-associated protein tau isoform 5 [Homo ... 27 3.9
gi|239752975 PREDICTED: hypothetical protein [Homo sapiens] 27 3.9
gi|239747564 PREDICTED: hypothetical protein XP_002347660 [Homo ... 27 3.9
gi|239741438 PREDICTED: hypothetical protein XP_002342169 [Homo ... 27 3.9
gi|38201621 eukaryotic translation initiation factor 4 gamma, 1 ... 27 3.9
gi|38201627 eukaryotic translation initiation factor 4 gamma, 1 ... 27 3.9
gi|38201623 eukaryotic translation initiation factor 4 gamma, 1 ... 27 3.9
gi|19923855 SYAP1 protein [Homo sapiens] 27 3.9
gi|75677365 dynein heavy chain domain 3 [Homo sapiens] 27 3.9
gi|39812378 RAN binding protein 9 [Homo sapiens] 27 5.1
gi|55741677 SET domain containing 1A [Homo sapiens] 27 5.1
gi|19111150 angiomotin isoform 2 [Homo sapiens] 27 5.1
>gi|169210300 PREDICTED: hypothetical protein LOC100131303 [Homo
sapiens]
Length = 123
Score = 260 bits (665), Expect = 2e-70
Identities = 123/123 (100%), Positives = 123/123 (100%)
Query: 1 MTDRILYIVSNMSSVPWEGSAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGG 60
MTDRILYIVSNMSSVPWEGSAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGG
Sbjct: 1 MTDRILYIVSNMSSVPWEGSAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGG 60
Query: 61 YRVHGDAPLATPTKAEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLEHRGRRLTPQK 120
YRVHGDAPLATPTKAEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLEHRGRRLTPQK
Sbjct: 61 YRVHGDAPLATPTKAEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLEHRGRRLTPQK 120
Query: 121 LAG 123
LAG
Sbjct: 121 LAG 123
>gi|169210470 PREDICTED: hypothetical protein LOC100131303 [Homo
sapiens]
Length = 123
Score = 260 bits (665), Expect = 2e-70
Identities = 123/123 (100%), Positives = 123/123 (100%)
Query: 1 MTDRILYIVSNMSSVPWEGSAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGG 60
MTDRILYIVSNMSSVPWEGSAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGG
Sbjct: 1 MTDRILYIVSNMSSVPWEGSAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGG 60
Query: 61 YRVHGDAPLATPTKAEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLEHRGRRLTPQK 120
YRVHGDAPLATPTKAEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLEHRGRRLTPQK
Sbjct: 61 YRVHGDAPLATPTKAEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLEHRGRRLTPQK 120
Query: 121 LAG 123
LAG
Sbjct: 121 LAG 123
>gi|169209989 PREDICTED: hypothetical protein LOC100131303 [Homo
sapiens]
Length = 123
Score = 260 bits (665), Expect = 2e-70
Identities = 123/123 (100%), Positives = 123/123 (100%)
Query: 1 MTDRILYIVSNMSSVPWEGSAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGG 60
MTDRILYIVSNMSSVPWEGSAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGG
Sbjct: 1 MTDRILYIVSNMSSVPWEGSAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGG 60
Query: 61 YRVHGDAPLATPTKAEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLEHRGRRLTPQK 120
YRVHGDAPLATPTKAEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLEHRGRRLTPQK
Sbjct: 61 YRVHGDAPLATPTKAEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLEHRGRRLTPQK 120
Query: 121 LAG 123
LAG
Sbjct: 121 LAG 123
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 31.6 bits (70), Expect = 0.16
Identities = 26/80 (32%), Positives = 30/80 (37%), Gaps = 27/80 (33%)
Query: 13 SSVPWEGSAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGGYRVHGDAPLATP 72
++ P AAA AT+PP+PG G R APLA P
Sbjct: 142 AAAPARAPRAAAAAATAPPSPGPAQ---------------------PGPRAQRAAPLAAP 180
Query: 73 TKAEAEKPA------PRRAP 86
A A PA PRRAP
Sbjct: 181 PPAPAAPPAVAPPAGPRRAP 200
>gi|169177031 PREDICTED: similar to hCG30082, partial [Homo sapiens]
Length = 299
Score = 30.8 bits (68), Expect = 0.27
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 71 TPTKAEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLEHRG 113
TP + + P PR R ++ + C +P+ R L+HRG
Sbjct: 162 TPRPRDCDTPRPRDCDTPRPRDCDTPRPRDCDTPRPRDLKHRG 204
>gi|4505531 oxysterol binding protein [Homo sapiens]
Length = 807
Score = 30.0 bits (66), Expect = 0.46
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 16 PWEGSAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGGYR 62
P G AAA PA +PPT G G G + GW + + GY+
Sbjct: 60 PGAGGVAAAGPAPAPPTGGSGGSGAGGSGSAREGWLFKWTNYIKGYQ 106
>gi|148612809 WNK lysine deficient protein kinase 1 [Homo sapiens]
Length = 2382
Score = 29.6 bits (65), Expect = 0.60
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 20 SAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGGYRVHGDAPLATPTKAEAEK 79
S AAVP ++PP P H +QV G V G AP P+ ++
Sbjct: 106 SIPAAVPQSAPPEP-HREETVTATATSQVAQQPPAAAAPGEQAVAGPAPSTVPSSTSKDR 164
Query: 80 P 80
P
Sbjct: 165 P 165
>gi|239756547 PREDICTED: hypothetical protein [Homo sapiens]
Length = 240
Score = 29.6 bits (65), Expect = 0.60
Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 17 WEGSAAAAVPATS-PPTPGHYHVLYRGCGETQVGWHGETYCLVGGYRVHGDAPLATPTKA 75
W S AA A PP P H G G +Q W GE + G R L + A
Sbjct: 79 WRRSEPAARTAQGLPPEPEPTHTRVAGLGSSQPSWEGELW----GVRHLVSLSLPASSGA 134
Query: 76 EAEKPAPRR 84
A P P R
Sbjct: 135 CAPPPLPPR 143
>gi|71143119 signal-induced proliferation-associated 1 like 3 [Homo
sapiens]
Length = 1781
Score = 28.9 bits (63), Expect = 1.0
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 13/85 (15%)
Query: 13 SSVPWEGSAAAA---VPAT---SPPTPGHYHVLYRGCGETQVGWHGETYCLVGGYRVHGD 66
S+ PW+ S A+ +PA+ +P TPGH L R +T + E+ L H
Sbjct: 1078 SNAPWQWSGPASHNSLPASKWATPTTPGHAQSLSRPLKQTPIVPFRESQPL------HSK 1131
Query: 67 APLATPTKAEAEKPA-PRRAPKRRQ 90
P++ P PA R P RQ
Sbjct: 1132 RPVSFPETPYTVSPAGADRVPPYRQ 1156
>gi|19924103 synapsin II isoform IIa [Homo sapiens]
Length = 582
Score = 28.5 bits (62), Expect = 1.3
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 59 GGYRVHGDAPLATPTKAEAEKP--APRRAPK 87
GG HGDAP ++ + AEA+ P AP + P+
Sbjct: 502 GGPTTHGDAPSSSSSLAEAQPPLAAPPQKPQ 532
>gi|89941479 hypothetical protein LOC148137 [Homo sapiens]
Length = 425
Score = 28.5 bits (62), Expect = 1.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 70 ATPTKAEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLE 110
A+P A+A+ P P AP QA + + D+ + R+LE
Sbjct: 257 ASPAPAQAQTPTPAPAPASSQAPLRPEDDILYQWRQRRKLE 297
>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sapiens]
Length = 1758
Score = 27.7 bits (60), Expect = 2.3
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 76 EAEKPAPRRAPKRRQATIES--DKDLGCSSPKIRRLE 110
E KP + KR++ T E DKD SS KI +LE
Sbjct: 1101 EKNKPLDNKGEKRKRKTEEKGVDKDFESSSMKISKLE 1137
>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sapiens]
Length = 1792
Score = 27.7 bits (60), Expect = 2.3
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 76 EAEKPAPRRAPKRRQATIES--DKDLGCSSPKIRRLE 110
E KP + KR++ T E DKD SS KI +LE
Sbjct: 1135 EKNKPLDNKGEKRKRKTEEKGVDKDFESSSMKISKLE 1171
>gi|22779860 forkhead box L1 [Homo sapiens]
Length = 345
Score = 27.7 bits (60), Expect = 2.3
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 59 GGYRVHGDAPLATPTKAEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLE 110
G YR P P EA++P + +A E+ G S P I RL+
Sbjct: 136 GNYRRRKRKPKPGPGAPEAKRPRAETHQRSAEAQPEAGSGAGGSGPAISRLQ 187
>gi|157739945 tetratricopeptide repeat, ankyrin repeat and
coiled-coil containing 2 [Homo sapiens]
Length = 1990
Score = 27.7 bits (60), Expect = 2.3
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 62 RVHGDAPLATPTKAEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLEHRGRRLTPQKL 121
++ D+P A+P +A + P P ++I S G + RR E RRL Q +
Sbjct: 395 QIASDSPHASPKHVDANRELPLTQPPSAHSSITSGSCPGTPEMR-RRQEEAMRRLASQVV 453
Query: 122 A 122
A
Sbjct: 454 A 454
>gi|157266264 pleckstrin homology-like domain, family B, member 3
[Homo sapiens]
Length = 640
Score = 27.7 bits (60), Expect = 2.3
Identities = 13/19 (68%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Query: 18 EGSAAAAVPA-TSPPTPGH 35
EGS+ AVPA T+PPTP H
Sbjct: 484 EGSSGPAVPAITAPPTPPH 502
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 27.3 bits (59), Expect = 3.0
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 8 IVSNMSSVPWEGSAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGGYRVHGDA 67
++ + SS P G+ + S PTP G T + G + +GG D+
Sbjct: 874 LLPSSSSSPPPGACGSP----SAPTPS------AGVAATTIAGFGHFHKALGGSLSSSDS 923
Query: 68 PLATPTKAEAEKP 80
PL TP + A P
Sbjct: 924 PLLTPLQPGARSP 936
>gi|151301137 AT-hook transcription factor [Homo sapiens]
Length = 1439
Score = 27.3 bits (59), Expect = 3.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 59 GGYRVHGDAPLATPTKAEAEKPAPRRAP 86
GG + D ATP KAEA + PR+ P
Sbjct: 792 GGDSLEVDGVAATPGKAEATRVLPRQCP 819
>gi|178557736 microtubule-associated protein tau isoform 5 [Homo
sapiens]
Length = 412
Score = 26.9 bits (58), Expect = 3.9
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 16/63 (25%)
Query: 51 HGETYCL-----VGGYRVHGD-----------APLATPTKAEAEKPAPRRAPKRRQATIE 94
H TY L GGY +H D +PL TPT+ +E+P + + T E
Sbjct: 14 HAGTYGLGDRKDQGGYTMHQDQEGDTDAGLKESPLQTPTEDGSEEPGSETSDAKSTPTAE 73
Query: 95 SDK 97
+++
Sbjct: 74 AEE 76
>gi|239752975 PREDICTED: hypothetical protein [Homo sapiens]
Length = 145
Score = 26.9 bits (58), Expect = 3.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 20 SAAAAVPATSPPTPGHYHVLYRGCGETQVGW 50
SA + +PP P + YRGC T V W
Sbjct: 3 SAEGCLSLIAPPNPTYRKEDYRGCPWTSVTW 33
>gi|239747564 PREDICTED: hypothetical protein XP_002347660 [Homo
sapiens]
Length = 145
Score = 26.9 bits (58), Expect = 3.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 20 SAAAAVPATSPPTPGHYHVLYRGCGETQVGW 50
SA + +PP P + YRGC T V W
Sbjct: 3 SAEGCLSLIAPPNPTYRKEDYRGCPWTSVTW 33
>gi|239741438 PREDICTED: hypothetical protein XP_002342169 [Homo
sapiens]
Length = 145
Score = 26.9 bits (58), Expect = 3.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 20 SAAAAVPATSPPTPGHYHVLYRGCGETQVGW 50
SA + +PP P + YRGC T V W
Sbjct: 3 SAEGCLSLIAPPNPTYRKEDYRGCPWTSVTW 33
>gi|38201621 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 26.9 bits (58), Expect = 3.9
Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 14/109 (12%)
Query: 15 VPWEGSAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGGYRVHGDAPLATPTK 74
+P +G + VP P Y G T+ G + Y G + P
Sbjct: 105 IPGQGRSTYVVPTQQYPVQPGAPGFYPGASPTEFGTYAGAYYPAQGVQ---QFPTGVAPA 161
Query: 75 AEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLEHRGRRLTPQKLAG 123
P+ APKR + TI +IR G+ +T + ++G
Sbjct: 162 PVLMNQPPQIAPKRERKTI-----------RIRDPNQGGKDITEEIMSG 199
>gi|38201627 eukaryotic translation initiation factor 4 gamma, 1
isoform 2 [Homo sapiens]
Length = 1512
Score = 26.9 bits (58), Expect = 3.9
Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 14/109 (12%)
Query: 15 VPWEGSAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGGYRVHGDAPLATPTK 74
+P +G + VP P Y G T+ G + Y G + P
Sbjct: 18 IPGQGRSTYVVPTQQYPVQPGAPGFYPGASPTEFGTYAGAYYPAQGVQ---QFPTGVAPA 74
Query: 75 AEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLEHRGRRLTPQKLAG 123
P+ APKR + TI +IR G+ +T + ++G
Sbjct: 75 PVLMNQPPQIAPKRERKTI-----------RIRDPNQGGKDITEEIMSG 112
>gi|38201623 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 26.9 bits (58), Expect = 3.9
Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 14/109 (12%)
Query: 15 VPWEGSAAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGGYRVHGDAPLATPTK 74
+P +G + VP P Y G T+ G + Y G + P
Sbjct: 105 IPGQGRSTYVVPTQQYPVQPGAPGFYPGASPTEFGTYAGAYYPAQGVQ---QFPTGVAPA 161
Query: 75 AEAEKPAPRRAPKRRQATIESDKDLGCSSPKIRRLEHRGRRLTPQKLAG 123
P+ APKR + TI +IR G+ +T + ++G
Sbjct: 162 PVLMNQPPQIAPKRERKTI-----------RIRDPNQGGKDITEEIMSG 199
>gi|19923855 SYAP1 protein [Homo sapiens]
Length = 352
Score = 26.9 bits (58), Expect = 3.9
Identities = 15/51 (29%), Positives = 21/51 (41%)
Query: 50 WHGETYCLVGGYRVHGDAPLATPTKAEAEKPAPRRAPKRRQATIESDKDLG 100
W G + GG + +GDAP P++ AE Q + KD G
Sbjct: 8 WLGLQQPVAGGGQPNGDAPPEQPSETVAESAEEELQQAGDQELLHQAKDFG 58
>gi|75677365 dynein heavy chain domain 3 [Homo sapiens]
Length = 4427
Score = 26.9 bits (58), Expect = 3.9
Identities = 13/58 (22%), Positives = 24/58 (41%)
Query: 42 GCGETQVGWHGETYCLVGGYRVHGDAPLATPTKAEAEKPAPRRAPKRRQATIESDKDL 99
G G +Q W G + G+AP + + +AE P P+ +S++ +
Sbjct: 13 GRGSSQASWSGRATRAAVATQEQGNAPAVSEPELQAELPKEEPEPRLEGPQAQSEESV 70
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 26.6 bits (57), Expect = 5.1
Identities = 33/114 (28%), Positives = 42/114 (36%), Gaps = 18/114 (15%)
Query: 21 AAAAVPATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGGYRVHGDAPLATPTKAEAEKP 80
A+AA PA+ PP P L G G T LV G P E EK
Sbjct: 93 ASAAAPASGPPAPPG---LAAGPGP---AGGAPTPALVAGSSAAAPFPHGDSALNEQEKE 146
Query: 81 APRRAPKRRQATIESDKDLGCS-SPKIR-----------RLEHRGRRLTPQKLA 122
RR + A E + L S SPK + R+ ++G TP+ A
Sbjct: 147 LQRRLKRLYPAVDEQETPLPRSWSPKDKFSYIGLSQNNLRVHYKGHGKTPKDAA 200
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 26.6 bits (57), Expect = 5.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 66 DAPLATPTKAEAEKPAPRRAPKRRQATIES 95
+ P ATP +A+ PA R+AP+ + TI +
Sbjct: 1180 EPPPATPPQAKFPGPASRKAPRGVERTIRN 1209
>gi|19111150 angiomotin isoform 2 [Homo sapiens]
Length = 675
Score = 26.6 bits (57), Expect = 5.1
Identities = 31/102 (30%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
Query: 9 VSNMSSVPWEGSAAAAV---PATSPPTPGHYHVLYRGCGETQVGWHGETYCLVGGYRVHG 65
V++ ++V +AAAAV PA P P V Q +T V
Sbjct: 544 VASAAAVAPSAAAAAAVQVAPAAPAPVPAPALVPVPAPAAAQASAPAQTQAPTSAPAVAP 603
Query: 66 D-APLATPTKAEAEKPA-PRRAPKRRQATIESDKDLGCSSPK 105
AP TP A+AE PA P P + +I S L C+ K
Sbjct: 604 TPAPTPTPAVAQAEVPASPATGPGPHRLSIPS---LTCNPDK 642
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,963,513
Number of Sequences: 37866
Number of extensions: 295858
Number of successful extensions: 1390
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1307
Number of HSP's gapped (non-prelim): 114
length of query: 123
length of database: 18,247,518
effective HSP length: 89
effective length of query: 34
effective length of database: 14,877,444
effective search space: 505833096
effective search space used: 505833096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.