Guide to the Human Genome
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Name: GS85 Sequence: fasta or formatted (639aa) NCBI GI: 169209613
Description:

PREDICTED: hypothetical protein LOC100128785

Not currently referenced in the text

Other entries for this name:
alt mRNA {639aa} PREDICTED: hypothetical protein LOC100128785
alt mRNA {639aa} PREDICTED: hypothetical protein LOC100128785
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         49           3
 C cysteine            3.4         22           1
 D aspartate           2.7         17           1
 E glutamate           5.3         34           2
 F phenylalanine       1.4          9           1
 G glycine             9.9         63           2
 H histidine           3.9         25           2
 I isoleucine          1.4          9           1
 K lysine              2.0         13           1
 L leucine            10.0         64           2
 M methionine          1.3          8           1
 N asparagine          2.5         16           2
 P proline            11.7         75           3
 Q glutamine           5.5         35           2
 R arginine            8.8         56           2
 S serine              8.1         52           3
 T threonine           5.2         33           2
 V valine              6.7         43           2
 W tryptophan          1.6         10           2
 Y tyrosine            0.9          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC100128785 
GS85                  1.000   PREDICTED: hypothetical protein LOC100128785 
GS85                  1.000   PREDICTED: hypothetical protein LOC100128785 
LOC727768             0.033   PREDICTED: similar to tektin 4 
MAFIP                 0.030   PREDICTED: MAFF interacting protein 
LOC652794             0.026   PREDICTED: similar to tektin 4 
TEKT4                 0.017   tektin 4 
MAFIP                 0.014   PREDICTED: MAFF interacting protein 
FNDC1                 0.013   fibronectin type III domain containing 1 
TSC22D2               0.011   TSC22 domain family, member 2 
LOC100292291          0.011   PREDICTED: hypothetical protein 
LOC100290604          0.011   PREDICTED: hypothetical protein XP_002346941 
LOC100287848          0.011   PREDICTED: hypothetical protein XP_002342070 
ARHGAP17              0.009   nadrin isoform 2 
LBA1                  0.009   lupus brain antigen 1 
ZNF469                0.008   zinc finger protein 469 
CREBBP                0.008   CREB binding protein isoform b 
CREBBP                0.008   CREB binding protein isoform a 
NACA                  0.008   nascent polypeptide-associated complex alpha subuni...
LOC645321             0.008   PREDICTED: hypothetical protein 
LOC645321             0.008   PREDICTED: hypothetical protein 
LOC100292934          0.008   PREDICTED: hypothetical protein 
ZNF828                0.008   zinc finger protein 828 
PRB3                  0.008   proline-rich protein BstNI subfamily 3 precursor [H...
MYO15A                0.008   myosin XV 
COL19A1               0.008   alpha 1 type XIX collagen precursor 
KIAA1522              0.008   hypothetical protein LOC57648 
COL5A1                0.007   alpha 1 type V collagen preproprotein 
LOC401180             0.007   PREDICTED: similar to hCG1745223 
LOC100133280          0.007   PREDICTED: similar to Putative POM121-like protein ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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