Guide to the Human Genome
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Name: LBA1 Sequence: fasta or formatted (2375aa) NCBI GI: 148806872
Description:

lupus brain antigen 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9        163           3
 C cysteine            2.7         63           2
 D aspartate           5.7        135           2
 E glutamate           9.8        233           7
 F phenylalanine       4.4        105           2
 G glycine             4.8        114           2
 H histidine           2.3         54           2
 I isoleucine          5.0        118           2
 K lysine              8.2        195           3
 L leucine            11.2        266           5
 M methionine          2.0         47           2
 N asparagine          3.5         82           2
 P proline             3.7         87           2
 Q glutamine           4.3        103           2
 R arginine            6.3        149           3
 S serine              6.0        143           2
 T threonine           3.5         83           2
 V valine              5.5        130           2
 W tryptophan          1.2         28           1
 Y tyrosine            3.2         77           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lupus brain antigen 1 
CDC2L2                0.004   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.004   cell division cycle 2-like 2 isoform 1 
CDC2L1                0.004   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.004   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.004   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.004   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.004   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.004   cell division cycle 2-like 1 (PITSLRE proteins) isof...
MYT1                  0.003   myelin transcription factor 1 
TTBK1                 0.003   tau tubulin kinase 1 
SLC24A1               0.003   solute carrier family 24 (sodium/potassium/calcium ex...
PODXL2                0.003   podocalyxin-like 2 
ZFHX3                 0.003   AT-binding transcription factor 1 
USP35                 0.003   ubiquitin specific protease 35 
ZNF326                0.003   zinc finger protein 326 isoform 1 
MYST4                 0.003   MYST histone acetyltransferase (monocytic leukemia)...
TRIM44                0.003   DIPB protein 
CENPB                 0.003   centromere protein B 
ATRX                  0.003   transcriptional regulator ATRX isoform 2 
ATRX                  0.003   transcriptional regulator ATRX isoform 1 
RAD54L2               0.003   RAD54-like 2 
AEBP2                 0.003   AE binding protein 2 isoform b 
AEBP2                 0.003   AE binding protein 2 isoform a 
DCAF8L2               0.003   DDB1 and CUL4 associated factor 8-like 2 
LOC441454             0.003   PREDICTED: hypothetical protein 
BCL11A                0.003   B-cell CLL/lymphoma 11A isoform 1 
BCL11A                0.003   B-cell CLL/lymphoma 11A isoform 2 
FKBP8                 0.003   FK506-binding protein 8 
HNRNPUL2              0.003   heterogeneous nuclear ribonucleoprotein U-like 2 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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