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Search of human proteins with 169209547
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169209547 PREDICTED: hypothetical protein [Homo sapiens]
(130 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169209547 PREDICTED: hypothetical protein [Homo sapiens] 272 6e-74
gi|113426180 PREDICTED: hypothetical protein [Homo sapiens] 272 6e-74
gi|239751035 PREDICTED: hypothetical protein XP_002347680 [Homo ... 265 6e-72
gi|169210552 PREDICTED: hypothetical protein [Homo sapiens] 44 4e-05
gi|169214023 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|169214468 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|239756297 PREDICTED: hypothetical protein [Homo sapiens] 31 0.32
gi|194097347 phosphoinositide-3-kinase, class 2 beta polypeptide... 31 0.32
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 31 0.32
gi|239750867 PREDICTED: hypothetical protein XP_002347588 [Homo ... 30 0.41
gi|239745228 PREDICTED: hypothetical protein XP_002343392 [Homo ... 30 0.41
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 30 0.71
gi|94536854 thrombospondin, type I, domain containing 4 [Homo sa... 30 0.71
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 29 1.2
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 29 1.2
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 29 1.2
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 29 1.2
gi|47578107 delangin isoform B [Homo sapiens] 29 1.2
gi|47578105 delangin isoform A [Homo sapiens] 29 1.2
gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 29 1.2
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 28 1.6
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 28 1.6
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 28 1.6
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 28 1.6
gi|167860126 serine (or cysteine) proteinase inhibitor, clade B ... 28 2.1
gi|4503475 eukaryotic translation elongation factor 1 alpha 2 [H... 28 2.1
gi|56786155 complement component 1, q subcomponent, C chain prec... 28 2.7
gi|166235903 complement component 1, q subcomponent, C chain pre... 28 2.7
gi|67551265 transcription factor ELYS [Homo sapiens] 28 2.7
gi|38016904 thrombospondin repeat containing 1 isoform 1 [Homo s... 27 3.5
>gi|169209547 PREDICTED: hypothetical protein [Homo sapiens]
Length = 130
Score = 272 bits (695), Expect = 6e-74
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 MLQEASQGTLDPQALGTIKIKLEKGIGKKGCLEASGLRCLCGENSAVWSSYAPLGVAGYE 60
MLQEASQGTLDPQALGTIKIKLEKGIGKKGCLEASGLRCLCGENSAVWSSYAPLGVAGYE
Sbjct: 1 MLQEASQGTLDPQALGTIKIKLEKGIGKKGCLEASGLRCLCGENSAVWSSYAPLGVAGYE 60
Query: 61 GYGLSSRVPPLPQLPRFRGWDFPWNPGKQGAPTALDARKEGVLLPVDPEKEGALLPVDAG 120
GYGLSSRVPPLPQLPRFRGWDFPWNPGKQGAPTALDARKEGVLLPVDPEKEGALLPVDAG
Sbjct: 61 GYGLSSRVPPLPQLPRFRGWDFPWNPGKQGAPTALDARKEGVLLPVDPEKEGALLPVDAG 120
Query: 121 KEKAPAARGP 130
KEKAPAARGP
Sbjct: 121 KEKAPAARGP 130
>gi|113426180 PREDICTED: hypothetical protein [Homo sapiens]
Length = 130
Score = 272 bits (695), Expect = 6e-74
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 MLQEASQGTLDPQALGTIKIKLEKGIGKKGCLEASGLRCLCGENSAVWSSYAPLGVAGYE 60
MLQEASQGTLDPQALGTIKIKLEKGIGKKGCLEASGLRCLCGENSAVWSSYAPLGVAGYE
Sbjct: 1 MLQEASQGTLDPQALGTIKIKLEKGIGKKGCLEASGLRCLCGENSAVWSSYAPLGVAGYE 60
Query: 61 GYGLSSRVPPLPQLPRFRGWDFPWNPGKQGAPTALDARKEGVLLPVDPEKEGALLPVDAG 120
GYGLSSRVPPLPQLPRFRGWDFPWNPGKQGAPTALDARKEGVLLPVDPEKEGALLPVDAG
Sbjct: 61 GYGLSSRVPPLPQLPRFRGWDFPWNPGKQGAPTALDARKEGVLLPVDPEKEGALLPVDAG 120
Query: 121 KEKAPAARGP 130
KEKAPAARGP
Sbjct: 121 KEKAPAARGP 130
>gi|239751035 PREDICTED: hypothetical protein XP_002347680 [Homo
sapiens]
Length = 130
Score = 265 bits (678), Expect = 6e-72
Identities = 126/130 (96%), Positives = 128/130 (98%)
Query: 1 MLQEASQGTLDPQALGTIKIKLEKGIGKKGCLEASGLRCLCGENSAVWSSYAPLGVAGYE 60
MLQEASQGTLDPQALGTIKIKLEKGIGKKGCLEASGLRCLC ENSAVWSSYAPLGVAGYE
Sbjct: 1 MLQEASQGTLDPQALGTIKIKLEKGIGKKGCLEASGLRCLCAENSAVWSSYAPLGVAGYE 60
Query: 61 GYGLSSRVPPLPQLPRFRGWDFPWNPGKQGAPTALDARKEGVLLPVDPEKEGALLPVDAG 120
GY LSSRVPPLPQLPRFRGWDFPWNPGKQGAPTALDARKEGV+LP+DPEKEGALLPVDAG
Sbjct: 61 GYSLSSRVPPLPQLPRFRGWDFPWNPGKQGAPTALDARKEGVMLPLDPEKEGALLPVDAG 120
Query: 121 KEKAPAARGP 130
KEKAPAARGP
Sbjct: 121 KEKAPAARGP 130
>gi|169210552 PREDICTED: hypothetical protein [Homo sapiens]
Length = 220
Score = 43.9 bits (102), Expect = 4e-05
Identities = 24/48 (50%), Positives = 28/48 (58%)
Query: 83 PWNPGKQGAPTALDARKEGVLLPVDPEKEGALLPVDAGKEKAPAARGP 130
P +P K+GA +DA KE L PVDP KEGAL PV G +P P
Sbjct: 69 PVDPEKEGALPPVDAGKEAALPPVDPGKEGALRPVVPGCVPSPRLLHP 116
Score = 43.1 bits (100), Expect = 6e-05
Identities = 21/41 (51%), Positives = 24/41 (58%)
Query: 84 WNPGKQGAPTALDARKEGVLLPVDPEKEGALLPVDAGKEKA 124
W P ++ +D KEG L PVD KE AL PVD GKE A
Sbjct: 59 WTPARKKHQPPVDPEKEGALPPVDAGKEAALPPVDPGKEGA 99
>gi|169214023 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 31.2 bits (69), Expect = 0.24
Identities = 25/66 (37%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 65 SSRVPPLPQLPRFRGWDFPWNPGKQGAPTALDARK--EGVLLPVDPEKEGALLPVDAGKE 122
SS PP P PW P GAPT A K E LL P P AG E
Sbjct: 64 SSAAPPTPHSSIPPRPPSPWGPRVWGAPTHRPALKGTEAQLLAPGPAAGSGCWPELAGTE 123
Query: 123 KAPAAR 128
A A R
Sbjct: 124 SASAER 129
>gi|169214468 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 31.2 bits (69), Expect = 0.24
Identities = 25/66 (37%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 65 SSRVPPLPQLPRFRGWDFPWNPGKQGAPTALDARK--EGVLLPVDPEKEGALLPVDAGKE 122
SS PP P PW P GAPT A K E LL P P AG E
Sbjct: 64 SSAAPPTPHSSIPPRPPSPWGPRVWGAPTHRPALKGTEAQLLAPGPAAGSGCWPELAGTE 123
Query: 123 KAPAAR 128
A A R
Sbjct: 124 SASAER 129
>gi|239756297 PREDICTED: hypothetical protein [Homo sapiens]
Length = 525
Score = 30.8 bits (68), Expect = 0.32
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 83 PWNPGKQGAPTALDARKEGVLLPVDPEKEGALLPVDAGKEKAP 125
P+ PG QG P + D R GV + G+ LP A E AP
Sbjct: 340 PFGPGPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAP 382
>gi|194097347 phosphoinositide-3-kinase, class 2 beta polypeptide
[Homo sapiens]
Length = 1634
Score = 30.8 bits (68), Expect = 0.32
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 29 KGCLEASGLRCLCGENSAVWSSYAPLGVAGYEGYGLSSRVPPLPQLPRFRGWDFPWNPGK 88
KG L L G + V SS P + EG PPLP PR WD P P +
Sbjct: 120 KGSLSGDYLYIFDGSDGGVSSSPGPGDI---EGSCKKLSPPPLP--PRASIWDTPPLPPR 174
Query: 89 QGAPTA 94
+G+P++
Sbjct: 175 KGSPSS 180
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 30.8 bits (68), Expect = 0.32
Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 64 LSSRVPPLPQLPRFRGWDFPWNPGKQGA-PTALDARKEGVLLPVDPEKEGALLPVDAGKE 122
LSS+ PPLP+ P + + P P A P + RKE P EK P+ G E
Sbjct: 756 LSSK-PPLPRKPLLQSFTLPHQPAPPDAGPGEREPRKE----PRTAEKR----PLRRGAE 806
Query: 123 KA--PAARGP 130
K+ PAA GP
Sbjct: 807 KSLPPAATGP 816
>gi|239750867 PREDICTED: hypothetical protein XP_002347588 [Homo
sapiens]
Length = 800
Score = 30.4 bits (67), Expect = 0.41
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 83 PWNPGKQGAPTALDARKEGVLLPVDPEKEGALLPVDAGKEKAP 125
P+ PG QG P + D R GV + G+ LP A E AP
Sbjct: 440 PFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAP 482
>gi|239745228 PREDICTED: hypothetical protein XP_002343392 [Homo
sapiens]
Length = 488
Score = 30.4 bits (67), Expect = 0.41
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 83 PWNPGKQGAPTALDARKEGVLLPVDPEKEGALLPVDAGKEKAP 125
P+ PG QG P + D R GV + G+ LP A E AP
Sbjct: 312 PFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAP 354
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 29.6 bits (65), Expect = 0.71
Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 26/128 (20%)
Query: 11 DPQALGTIKIKLEKGIGKKGCLEASGLRCLCGENSAVWSSYAPLGVAGYEG-YGLSSRVP 69
+P A+ T I LE+ +GKKG G+ G P G G++G +GL R P
Sbjct: 863 EPGAILTEDIPLERLMGKKG---EPGMHGAPG-------PMGPKGPPGHKGEFGLPGR-P 911
Query: 70 PLPQLPRFRGW------------DFPWNPGKQGAPTALDARKEGVLLPVDPEKEGALLPV 117
P L +G P PG G P A+ +G + P+ P + +PV
Sbjct: 912 GRPGLNGLKGTKGDPGVIMQGPPGLPGPPGPPGPPGAV-INIKGAIFPI-PVRPHCKMPV 969
Query: 118 DAGKEKAP 125
D +P
Sbjct: 970 DTAHPGSP 977
>gi|94536854 thrombospondin, type I, domain containing 4 [Homo
sapiens]
Length = 1018
Score = 29.6 bits (65), Expect = 0.71
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Query: 42 GENSAVWSSYAPLGVAGYEGYG--LSSRVPPLPQLPRFRGWDFPWNPGKQGAPTALDARK 99
G VW ++ P G + P LP+ R RG P P + A + A +
Sbjct: 50 GGAPGVWGAWGPWSACSRSCSGGVMEQTRPCLPRSYRLRGGQRPGAPARAFADHVVSAVR 109
Query: 100 EGVLLPVDPEKEGALLPVDAGKEKAPAARG 129
V L ++ AL DA ++ RG
Sbjct: 110 TSVPLHRSRDETPALAGTDASRQGPTVLRG 139
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 28.9 bits (63), Expect = 1.2
Identities = 32/82 (39%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 53 PLGVAGYEGY-GLSSRVPP--LPQLPRFRGWDFPWNPGKQGAPTALDARKEGVLLPVDPE 109
P G+AG G GL + P LP G PGKQGAP A R G PV P
Sbjct: 973 PQGLAGQRGIVGLPGQRGERGFPGLPGPSG-----EPGKQGAPGASGDR--GPPGPVGP- 1024
Query: 110 KEGALLPV-DAGKEKAPAARGP 130
G P + G+E +P A GP
Sbjct: 1025 -PGLTGPAGEPGREGSPGADGP 1045
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 28.9 bits (63), Expect = 1.2
Identities = 32/82 (39%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 53 PLGVAGYEGY-GLSSRVPP--LPQLPRFRGWDFPWNPGKQGAPTALDARKEGVLLPVDPE 109
P G+AG G GL + P LP G PGKQGAP A R G PV P
Sbjct: 904 PQGLAGQRGIVGLPGQRGERGFPGLPGPSG-----EPGKQGAPGASGDR--GPPGPVGP- 955
Query: 110 KEGALLPV-DAGKEKAPAARGP 130
G P + G+E +P A GP
Sbjct: 956 -PGLTGPAGEPGREGSPGADGP 976
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 28.9 bits (63), Expect = 1.2
Identities = 34/107 (31%), Positives = 41/107 (38%), Gaps = 7/107 (6%)
Query: 27 GKKGCLEASGLRCLCGENSAVWSSYAPLGVAGYEGYGLSSRVPPLPQLPRFRGWDFPWNP 86
GKKG S ++ + G+ S GV G G +P LP LP G FP
Sbjct: 543 GKKGEPILSTIQGMPGDRGDS-GSQGFRGVIGEPGKDGVPGLPGLPGLPGDGGQGFPGEK 601
Query: 87 GKQGAPTAL----DARKEGVLLPVDPEKEGALLPVDAGKEKAPAARG 129
G G P G LP P G LP D GK+ P +G
Sbjct: 602 GLPGLPGEKGHPGPPGLPGNGLPGLPGPRG--LPGDKGKDGLPGQQG 646
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 28.9 bits (63), Expect = 1.2
Identities = 34/107 (31%), Positives = 41/107 (38%), Gaps = 7/107 (6%)
Query: 27 GKKGCLEASGLRCLCGENSAVWSSYAPLGVAGYEGYGLSSRVPPLPQLPRFRGWDFPWNP 86
GKKG S ++ + G+ S GV G G +P LP LP G FP
Sbjct: 542 GKKGEPILSTIQGMPGDRGDS-GSQGFRGVIGEPGKDGVPGLPGLPGLPGDGGQGFPGEK 600
Query: 87 GKQGAPTAL----DARKEGVLLPVDPEKEGALLPVDAGKEKAPAARG 129
G G P G LP P G LP D GK+ P +G
Sbjct: 601 GLPGLPGEKGHPGPPGLPGNGLPGLPGPRG--LPGDKGKDGLPGQQG 645
>gi|47578107 delangin isoform B [Homo sapiens]
Length = 2697
Score = 28.9 bits (63), Expect = 1.2
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 34 ASGLRCLCGENSAVWSSYAPLGVAGYEGYGLSSRVPPLPQL 74
+SG R + +NS V S YAP AGY Y S PQ+
Sbjct: 161 SSGNRFMPQQNSPVPSPYAPQSPAGYMPYSHPSSYTTHPQM 201
>gi|47578105 delangin isoform A [Homo sapiens]
Length = 2804
Score = 28.9 bits (63), Expect = 1.2
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 34 ASGLRCLCGENSAVWSSYAPLGVAGYEGYGLSSRVPPLPQL 74
+SG R + +NS V S YAP AGY Y S PQ+
Sbjct: 161 SSGNRFMPQQNSPVPSPYAPQSPAGYMPYSHPSSYTTHPQM 201
>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
Length = 1125
Score = 28.9 bits (63), Expect = 1.2
Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 3 QEASQGTLDPQALGTIKIKLEKG----IGKKGCLEASGLRCLCGENSAVWSSYAPLGVAG 58
++ S+G PQ L + IK EKG +G +G + G+ GE + P G G
Sbjct: 413 EKGSEGPTGPQGLQGLSIKGEKGDIGPVGPQGPMGIPGIGSQ-GE-QGIQGPIGPPGPQG 470
Query: 59 YEGYGLSSRVPPLPQLPRFRGWDFPWNP------GKQGAPTALDARKEGVLLPVDPEKEG 112
G GL + Q+ G P P G +G P ++ + P P ++G
Sbjct: 471 PAGQGLPGSKGEVGQM----GPTGPRGPVGIGVQGPKGEPGSIGLPGQ----PGVPGEDG 522
Query: 113 ALLPVDAGKEKAPAARGP 130
A G+ P ARGP
Sbjct: 523 A--AGKKGEAGLPGARGP 538
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 28.5 bits (62), Expect = 1.6
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 22/91 (24%)
Query: 55 GVAGYEGYGLSSRVPPLPQ-LPRFRGWD-------FPWNPGKQGA--------PTALDAR 98
G AG +G R PP P+ P +G FP PG++GA PT ++
Sbjct: 1164 GPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEG- 1222
Query: 99 KEGVLLPVDPEKEGALLPVDAGKEKAPAARG 129
P P GA++P G P +RG
Sbjct: 1223 -----FPGPPGLPGAIIPGQTGNRGPPGSRG 1248
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 28.5 bits (62), Expect = 1.6
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 22/91 (24%)
Query: 55 GVAGYEGYGLSSRVPPLPQ-LPRFRGWD-------FPWNPGKQGA--------PTALDAR 98
G AG +G R PP P+ P +G FP PG++GA PT ++
Sbjct: 1164 GPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEG- 1222
Query: 99 KEGVLLPVDPEKEGALLPVDAGKEKAPAARG 129
P P GA++P G P +RG
Sbjct: 1223 -----FPGPPGLPGAIIPGQTGNRGPPGSRG 1248
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 28.5 bits (62), Expect = 1.6
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 22/91 (24%)
Query: 55 GVAGYEGYGLSSRVPPLPQ-LPRFRGWD-------FPWNPGKQGA--------PTALDAR 98
G AG +G R PP P+ P +G FP PG++GA PT ++
Sbjct: 1164 GPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEG- 1222
Query: 99 KEGVLLPVDPEKEGALLPVDAGKEKAPAARG 129
P P GA++P G P +RG
Sbjct: 1223 -----FPGPPGLPGAIIPGQTGNRGPPGSRG 1248
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 28.5 bits (62), Expect = 1.6
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 22/91 (24%)
Query: 55 GVAGYEGYGLSSRVPPLPQ-LPRFRGWD-------FPWNPGKQGA--------PTALDAR 98
G AG +G R PP P+ P +G FP PG++GA PT ++
Sbjct: 1164 GPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEG- 1222
Query: 99 KEGVLLPVDPEKEGALLPVDAGKEKAPAARG 129
P P GA++P G P +RG
Sbjct: 1223 -----FPGPPGLPGAIIPGQTGNRGPPGSRG 1248
>gi|167860126 serine (or cysteine) proteinase inhibitor, clade B
(ovalbumin), member 5 [Homo sapiens]
Length = 375
Score = 28.1 bits (61), Expect = 2.1
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 19 KIKLEKGIGKKGCLEASGLRCLCGENSAVWSSYAPLGVAGYEGYGLSS 66
K K+EK I K CLE GL+ + E+++ +S G++ +G LS+
Sbjct: 275 KFKVEKMIDPKACLENLGLKHIFSEDTSDFS-----GMSETKGVALSN 317
>gi|4503475 eukaryotic translation elongation factor 1 alpha 2 [Homo
sapiens]
Length = 463
Score = 28.1 bits (61), Expect = 2.1
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 56 VAGYEGYGLSSRVPPLPQLPRFRGWDFPWNPGKQGAPTALDARKEGVLLPVDPEKEGALL 115
++G+ G + + P P +P F+GW G + L+A + +L P P + L
Sbjct: 193 ISGWHG---DNMLEPSPNMPWFKGWKVERKEGNASGVSLLEA-LDTILPPTRPTDKPLRL 248
Query: 116 PV 117
P+
Sbjct: 249 PL 250
>gi|56786155 complement component 1, q subcomponent, C chain
precursor [Homo sapiens]
Length = 245
Score = 27.7 bits (60), Expect = 2.7
Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 19/98 (19%)
Query: 24 KGIGKKGCLEASGLRCLCGENSAVWSSYAPLGVAGYEGYGLSSRVPPLPQLPRFRG---- 79
+G GC G+ L G AP G GY+G P +P +P RG
Sbjct: 25 RGQANTGCYGIPGMPGLPG---------AP-GKDGYDGLPGPKGEPGIPAIPGIRGPKGQ 74
Query: 80 ---WDFPWNPGKQG--APTALDARKEGVLLPVDPEKEG 112
P +PGK G P + + +P +P +EG
Sbjct: 75 KGEPGLPGHPGKNGPMGPPGMPGVPGPMGIPGEPGEEG 112
>gi|166235903 complement component 1, q subcomponent, C chain
precursor [Homo sapiens]
Length = 245
Score = 27.7 bits (60), Expect = 2.7
Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 19/98 (19%)
Query: 24 KGIGKKGCLEASGLRCLCGENSAVWSSYAPLGVAGYEGYGLSSRVPPLPQLPRFRG---- 79
+G GC G+ L G AP G GY+G P +P +P RG
Sbjct: 25 RGQANTGCYGIPGMPGLPG---------AP-GKDGYDGLPGPKGEPGIPAIPGIRGPKGQ 74
Query: 80 ---WDFPWNPGKQG--APTALDARKEGVLLPVDPEKEG 112
P +PGK G P + + +P +P +EG
Sbjct: 75 KGEPGLPGHPGKNGPMGPPGMPGVPGPMGIPGEPGEEG 112
>gi|67551265 transcription factor ELYS [Homo sapiens]
Length = 2266
Score = 27.7 bits (60), Expect = 2.7
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 13 QALGTIKIKLEKGIGKKGCLEASGLRCL-CGENSAVWSSYAPLGVAGYEGYGLSSRVPPL 71
QALG +I LE + K +GL CL CG V +S ++ Y G++ + P +
Sbjct: 21 QALGEDEITLESVLRGKFAAGKNGLACLACGPQLEVVNSITGERLSAYRFSGVNEQPPVV 80
Query: 72 PQLPRF 77
+ F
Sbjct: 81 LAVKEF 86
>gi|38016904 thrombospondin repeat containing 1 isoform 1 [Homo
sapiens]
Length = 1074
Score = 27.3 bits (59), Expect = 3.5
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 15/72 (20%)
Query: 61 GYGLSSRVPPLPQLPRFRGW-----------DFPWNP---GKQG-APTALDARKEGVLLP 105
G G R P P+ P +GW FP P G+QG P G L
Sbjct: 270 GEGGFFRASPQPRRPSSQGWASPQVAGRRPDPFPSVPRGRGQQGQGPWGTGGTPHGPRLE 329
Query: 106 VDPEKEGALLPV 117
DP+ GA LP+
Sbjct: 330 PDPQHPGAWLPL 341
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.137 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,949,043
Number of Sequences: 37866
Number of extensions: 296563
Number of successful extensions: 634
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 602
Number of HSP's gapped (non-prelim): 43
length of query: 130
length of database: 18,247,518
effective HSP length: 90
effective length of query: 40
effective length of database: 14,839,578
effective search space: 593583120
effective search space used: 593583120
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.