Guide to the Human Genome
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Name: NIPBL Sequence: fasta or formatted (2697aa) NCBI GI: 47578107
Description:

delangin isoform B

Referenced in:

Additional Genes in Development

Other entries for this name:
alt prot [2804aa] delangin isoform A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9        131           2
 C cysteine            1.3         34           1
 D aspartate           6.7        181           3
 E glutamate           7.7        207           5
 F phenylalanine       2.6         69           2
 G glycine             4.3        116           3
 H histidine           2.3         62           2
 I isoleucine          4.6        125           2
 K lysine              8.7        234           3
 L leucine             8.9        239           4
 M methionine          2.9         77           3
 N asparagine          4.8        130           2
 P proline             5.3        143           3
 Q glutamine           5.6        150           3
 R arginine            5.9        159           4
 S serine             10.5        282           3
 T threonine           5.4        145           3
 V valine              5.5        149           3
 W tryptophan          0.3          8           1
 Y tyrosine            2.1         56           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   delangin isoform B 
NIPBL                 0.996   delangin isoform A 
LOC100170229          0.014   hypothetical protein LOC100170229 
SRRM2                 0.014   splicing coactivator subunit SRm300 
NEFH                  0.012   neurofilament, heavy polypeptide 200kDa 
RBBP6                 0.011   retinoblastoma-binding protein 6 isoform 2 
RBBP6                 0.011   retinoblastoma-binding protein 6 isoform 1 
BOD1L                 0.011   biorientation of chromosomes in cell division 1-like...
PPIG                  0.011   peptidylprolyl isomerase G 
PRPF4B                0.010   serine/threonine-protein kinase PRP4K 
ZC3H13                0.010   zinc finger CCCH-type containing 13 
NKTR                  0.010   natural killer-tumor recognition sequence 
SFRS4                 0.010   splicing factor, arginine/serine-rich 4 
IWS1                  0.009   IWS1 homolog 
CYLC1                 0.009   cylicin, basic protein of sperm head cytoskeleton 1...
AFF4                  0.009   ALL1 fused gene from 5q31 
ATRX                  0.009   transcriptional regulator ATRX isoform 2 
ATRX                  0.009   transcriptional regulator ATRX isoform 1 
SFRS12                0.009   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.009   splicing factor, arginine/serine-rich 12 isoform b [...
LOC100286959          0.009   PREDICTED: hypothetical protein XP_002343921 
DSPP                  0.009   dentin sialophosphoprotein preproprotein 
TRDN                  0.009   triadin 
TCHH                  0.009   trichohyalin 
PCLO                  0.009   piccolo isoform 2 
PCLO                  0.009   piccolo isoform 1 
ANKRD12               0.008   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.008   ankyrin repeat domain 12 isoform 1 
SFRS2IP               0.008   splicing factor, arginine/serine-rich 2, interactin...
CALD1                 0.008   caldesmon 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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