Guide to the Human Genome
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Name: LOC729519 Sequence: fasta or formatted (130aa) NCBI GI: 113426180
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {130aa} PREDICTED: hypothetical protein
alt prot {220aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         14           2
 C cysteine            2.3          3           1
 D aspartate           3.8          5           1
 E glutamate           6.9          9           1
 F phenylalanine       1.5          2           1
 G glycine            13.8         18           1
 H histidine           0.0          0           0
 I isoleucine          2.3          3           1
 K lysine              7.7         10           2
 L leucine            12.3         16           2
 M methionine          0.8          1           1
 N asparagine          1.5          2           1
 P proline            10.8         14           2
 Q glutamine           3.8          5           1
 R arginine            4.6          6           1
 S serine              5.4          7           2
 T threonine           2.3          3           1
 V valine              4.6          6           1
 W tryptophan          2.3          3           1
 Y tyrosine            2.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729519             1.000   PREDICTED: hypothetical protein 
LOC100291008          0.972   PREDICTED: hypothetical protein XP_002347680 
LOC729519             0.077   PREDICTED: hypothetical protein 
LOC100133554          0.024   PREDICTED: hypothetical protein 
LOC100133554          0.024   PREDICTED: hypothetical protein 
LOC100292848          0.024   PREDICTED: hypothetical protein 
PIK3C2B               0.024   phosphoinositide-3-kinase, class 2 beta polypeptide...
C2orf55               0.024   hypothetical protein LOC343990 
LOC100289782          0.020   PREDICTED: hypothetical protein XP_002347588 
LOC100287587          0.020   PREDICTED: hypothetical protein XP_002343392 
COL15A1               0.020   alpha 1 type XV collagen precursor 
THSD4                 0.020   thrombospondin, type I, domain containing 4 
COL2A1                0.016   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.016   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL4A6                0.016   type IV alpha 6 collagen isoform A precursor 
COL4A6                0.016   type IV alpha 6 collagen isoform B precursor 
NIPBL                 0.016   delangin isoform B 
NIPBL                 0.016   delangin isoform A 
COL28A1               0.016   collagen, type XXVIII precursor 
COL4A3                0.012   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.012   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.012   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.012   alpha 3 type IV collagen isoform 1 precursor 
SERPINB5              0.012   serine (or cysteine) proteinase inhibitor, clade B ...
EEF1A2                0.012   eukaryotic translation elongation factor 1 alpha 2 [H...
C1QC                  0.012   complement component 1, q subcomponent, C chain prec...
C1QC                  0.012   complement component 1, q subcomponent, C chain pre...
AHCTF1                0.012   transcription factor ELYS 
ADAMTSL4              0.008   thrombospondin repeat containing 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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