Guide to the Human Genome
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Name: LOC729519 Sequence: fasta or formatted (220aa) NCBI GI: 169210552
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {130aa} PREDICTED: hypothetical protein
alt prot {130aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         12           2
 C cysteine            4.5         10           3
 D aspartate           2.7          6           1
 E glutamate           4.1          9           1
 F phenylalanine       3.2          7           2
 G glycine             7.7         17           3
 H histidine           3.2          7           1
 I isoleucine          2.7          6           2
 K lysine              4.5         10           2
 L leucine             8.6         19           2
 M methionine          0.9          2           1
 N asparagine          0.0          0           0
 P proline            14.1         31           2
 Q glutamine           4.1          9           1
 R arginine           10.0         22           2
 S serine             10.5         23           3
 T threonine           5.0         11           1
 V valine              6.4         14           2
 W tryptophan          2.3          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729519             0.043   PREDICTED: hypothetical protein 
LOC729519             0.043   PREDICTED: hypothetical protein 
LOC100291008          0.038   PREDICTED: hypothetical protein XP_002347680 
CASKIN1               0.034   CASK interacting protein 1 
LOC100290944          0.022   PREDICTED: hypothetical protein XP_002348258 
LOC100287235          0.022   PREDICTED: hypothetical protein XP_002342248 
NIPAL4                0.020   ichthyin protein 
CEL                   0.018   carboxyl ester lipase precursor 
YAP1                  0.018   Yes-associated protein 1, 65kDa isoform 2 
YAP1                  0.018   Yes-associated protein 1, 65kDa isoform 1 
LOC100290488          0.016   PREDICTED: hypothetical protein XP_002346728 
LOC100289347          0.016   PREDICTED: hypothetical protein XP_002342550 
ZFAT                  0.016   zinc finger protein 406 isoform ZFAT-1 
ZFAT                  0.016   zinc finger protein 406 isoform TR-ZFAT 
SIPA1L3               0.016   signal-induced proliferation-associated 1 like 3 [Ho...
SF3A2                 0.016   splicing factor 3a, subunit 2 
BSN                   0.013   bassoon protein 
ADAMTSL4              0.013   thrombospondin repeat containing 1 isoform 1 
CACNA1H               0.013   calcium channel, voltage-dependent, T type, alpha 1H...
CACNA1H               0.013   calcium channel, voltage-dependent, T type, alpha 1H...
ADAMTSL4              0.013   thrombospondin repeat containing 1 isoform 2 
C10orf12              0.013   hypothetical protein LOC26148 
FAM83H                0.013   FAM83H 
ZNF828                0.013   zinc finger protein 828 
PAIP1                 0.013   poly(A) binding protein interacting protein 1 isofor...
FNBP4                 0.013   formin binding protein 4 
FLJ22184              0.011   PREDICTED: hypothetical protein FLJ22184 
TBX2                  0.011   T-box 2 
OBSCN                 0.011   obscurin, cytoskeletal calmodulin and titin-interac...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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