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Search of human proteins with 169207410
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169207410 PREDICTED: hypothetical protein [Homo sapiens]
(225 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169207410 PREDICTED: hypothetical protein [Homo sapiens] 471 e-133
gi|169207782 PREDICTED: hypothetical protein [Homo sapiens] 251 3e-67
gi|169207076 PREDICTED: hypothetical protein [Homo sapiens] 251 3e-67
gi|48762934 alpha 2 type I collagen [Homo sapiens] 43 2e-04
gi|23065526 growth arrest-specific 2 like 1 isoform a [Homo sapi... 40 0.002
gi|19923777 growth arrest-specific 2 like 1 isoform a [Homo sapi... 40 0.002
gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo sa... 38 0.006
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 37 0.014
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ... 37 0.014
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ... 37 0.014
gi|194272180 plexin B1 [Homo sapiens] 37 0.014
gi|40254442 plexin B1 [Homo sapiens] 37 0.014
gi|13899309 ribosomal protein S6 kinase-like 1 [Homo sapiens] 37 0.014
gi|21389357 MAPK-interacting and spindle-stabilizing protein [Ho... 37 0.018
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 36 0.023
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 36 0.023
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 36 0.023
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 36 0.023
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 36 0.030
gi|222136583 inositol polyphosphate phosphatase-like 1 [Homo sap... 35 0.040
gi|117938768 GNAS complex locus alex [Homo sapiens] 35 0.068
gi|78499633 phospholipase C, eta 2 [Homo sapiens] 34 0.088
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [... 34 0.088
gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens] 34 0.088
gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens] 34 0.088
gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens] 34 0.088
gi|22027580 alpha 1 type XIII collagen isoform 6 [Homo sapiens] 34 0.088
gi|163965366 nascent polypeptide-associated complex alpha subuni... 34 0.12
gi|62362414 c-abl oncogene 1, receptor tyrosine kinase isoform a... 33 0.15
gi|62362412 c-abl oncogene 1, receptor tyrosine kinase isoform b... 33 0.15
>gi|169207410 PREDICTED: hypothetical protein [Homo sapiens]
Length = 225
Score = 471 bits (1212), Expect = e-133
Identities = 225/225 (100%), Positives = 225/225 (100%)
Query: 1 MRGVGPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIP 60
MRGVGPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIP
Sbjct: 1 MRGVGPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIP 60
Query: 61 TLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSL 120
TLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSL
Sbjct: 61 TLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSL 120
Query: 121 QGGRDRGRWGRWVRRRVPCPLPGLRPHERAGAALLATCRGNAPTPSACLTWLESKNKKNY 180
QGGRDRGRWGRWVRRRVPCPLPGLRPHERAGAALLATCRGNAPTPSACLTWLESKNKKNY
Sbjct: 121 QGGRDRGRWGRWVRRRVPCPLPGLRPHERAGAALLATCRGNAPTPSACLTWLESKNKKNY 180
Query: 181 AAGEACGGEKRRFHVSPVLRPDRTPRAFRALSQRPPRVPELQQEM 225
AAGEACGGEKRRFHVSPVLRPDRTPRAFRALSQRPPRVPELQQEM
Sbjct: 181 AAGEACGGEKRRFHVSPVLRPDRTPRAFRALSQRPPRVPELQQEM 225
>gi|169207782 PREDICTED: hypothetical protein [Homo sapiens]
Length = 330
Score = 251 bits (642), Expect = 3e-67
Identities = 131/160 (81%), Positives = 133/160 (83%), Gaps = 5/160 (3%)
Query: 1 MRGVGPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIP 60
MRGVGPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIP
Sbjct: 1 MRGVGPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIP 60
Query: 61 TLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSL 120
TLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSL
Sbjct: 61 TLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSL 120
Query: 121 QGGRDRGRWGRWVRRRVPCPLPGLRPHERAGAALLATCRG 160
Q R GR R P G R A + + RG
Sbjct: 121 Q-----DRLGRASRPGCPPSPRGSRQERGANSPGRSGARG 155
Score = 231 bits (590), Expect = 3e-61
Identities = 131/221 (59%), Positives = 142/221 (64%), Gaps = 27/221 (12%)
Query: 6 PRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPP-QTIPTLFL 64
PRGS + A + RG +L P + P P RG PP +T+P
Sbjct: 136 PRGSRQERGANSPGRSGARGCGGAAAL---QQEPTNFRGRPRPGARGTDPPGRTLP---- 188
Query: 65 AGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSLQGGR 124
A + + PG G G ++ P R G G P + QGGR
Sbjct: 189 APLARPSTQPGRRP--GLGRAASPLGPRGAGVTGAGP-----------------ATQGGR 229
Query: 125 DRGRWGRWVRRRVPCPLPGLRPHERAGAALLATCRGNAPTPSACLTWLESKNKKNYAAGE 184
DRGRWGRWVRRRVPCPLPGLRPHERAGAALLATCRGNAPTPSACLTWLESKNKKNY AGE
Sbjct: 230 DRGRWGRWVRRRVPCPLPGLRPHERAGAALLATCRGNAPTPSACLTWLESKNKKNYDAGE 289
Query: 185 ACGGEKRRFHVSPVLRPDRTPRAFRALSQRPPRVPELQQEM 225
ACGGEKRRFHVSPVLRPDRTPRAFRALSQRPPRVPELQQEM
Sbjct: 290 ACGGEKRRFHVSPVLRPDRTPRAFRALSQRPPRVPELQQEM 330
>gi|169207076 PREDICTED: hypothetical protein [Homo sapiens]
Length = 330
Score = 251 bits (642), Expect = 3e-67
Identities = 131/160 (81%), Positives = 133/160 (83%), Gaps = 5/160 (3%)
Query: 1 MRGVGPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIP 60
MRGVGPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIP
Sbjct: 1 MRGVGPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIP 60
Query: 61 TLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSL 120
TLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSL
Sbjct: 61 TLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSL 120
Query: 121 QGGRDRGRWGRWVRRRVPCPLPGLRPHERAGAALLATCRG 160
Q R GR R P G R A + + RG
Sbjct: 121 Q-----DRLGRASRPGCPPSPRGSRQERGANSPGRSGARG 155
Score = 231 bits (590), Expect = 3e-61
Identities = 131/221 (59%), Positives = 142/221 (64%), Gaps = 27/221 (12%)
Query: 6 PRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPP-QTIPTLFL 64
PRGS + A + RG +L P + P P RG PP +T+P
Sbjct: 136 PRGSRQERGANSPGRSGARGCGGAAAL---QQEPTNFRGRPRPGARGTDPPGRTLP---- 188
Query: 65 AGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPPGPAGSLVFPERRGSLQGGR 124
A + + PG G G ++ P R G G P + QGGR
Sbjct: 189 APLARPSTQPGRRP--GLGRAASPLGPRGAGVTGAGP-----------------ATQGGR 229
Query: 125 DRGRWGRWVRRRVPCPLPGLRPHERAGAALLATCRGNAPTPSACLTWLESKNKKNYAAGE 184
DRGRWGRWVRRRVPCPLPGLRPHERAGAALLATCRGNAPTPSACLTWLESKNKKNY AGE
Sbjct: 230 DRGRWGRWVRRRVPCPLPGLRPHERAGAALLATCRGNAPTPSACLTWLESKNKKNYDAGE 289
Query: 185 ACGGEKRRFHVSPVLRPDRTPRAFRALSQRPPRVPELQQEM 225
ACGGEKRRFHVSPVLRPDRTPRAFRALSQRPPRVPELQQEM
Sbjct: 290 ACGGEKRRFHVSPVLRPDRTPRAFRALSQRPPRVPELQQEM 330
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 42.7 bits (99), Expect = 2e-04
Identities = 43/145 (29%), Positives = 53/145 (36%), Gaps = 22/145 (15%)
Query: 37 GSPLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGA-------------G 83
G P ++ P P +G Q +P + AG + APGS G G
Sbjct: 1009 GEPGEKGPRGLPGLKGHNGLQGLPGI--AGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDG 1066
Query: 84 NSSDPATSRLGGSRGPH----PTLPPGPAGSLVFPERRGSLQGGRDRGRWGRWVRRRVPC 139
+ P T G RGP P PPGP G P G GG D G G + R P
Sbjct: 1067 RTGHPGTVGPAGIRGPQGHQGPAGPPGPPGP---PGPPGVSGGGYDFGYDGDFYRADQPR 1123
Query: 140 PLPGLRPHERAGAALLATCRGNAPT 164
P LRP + A L + T
Sbjct: 1124 SAPSLRPKDYEVDATLKSLNNQIET 1148
>gi|23065526 growth arrest-specific 2 like 1 isoform a [Homo
sapiens]
Length = 681
Score = 40.0 bits (92), Expect = 0.002
Identities = 56/205 (27%), Positives = 68/205 (33%), Gaps = 39/205 (19%)
Query: 38 SPLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETE-------APGSSTHVGAGNSSDPAT 90
SP +P+PG ERRG RP T +L ET P + +G+S A+
Sbjct: 301 SPRPASPVPGSERRGSRPEMTPVSLRSTKEGPETPPRPRDQLPPHPRSRRYSGDSDSSAS 360
Query: 91 SRLGGSRG--------------PHPTLPPG-PAGSLVFPERRGSLQGGRDRGR-----WG 130
S G G P L G PA P R + DRGR G
Sbjct: 361 SAQSGPLGTRSDDTGTGPRRERPSRRLTTGTPASPRRPPALRSQSRDRLDRGRPRGAPGG 420
Query: 131 RWVRRRVPCPLPGLRPHERAGAALLATCRGNAPTPSACLTWLESKNKKNYAAGEACGGEK 190
R + VP P R R A+L R S W+ G GG
Sbjct: 421 RGAQLSVPSPARRARSQSREEQAVLLVRRDRDGQHS----WV--------PRGRGSGGSG 468
Query: 191 RRFHVSPVLRPDRTPRAFRALSQRP 215
R +P R PR R S P
Sbjct: 469 RSTPQTPRARSPAAPRLSRVSSPSP 493
>gi|19923777 growth arrest-specific 2 like 1 isoform a [Homo
sapiens]
Length = 681
Score = 40.0 bits (92), Expect = 0.002
Identities = 56/205 (27%), Positives = 68/205 (33%), Gaps = 39/205 (19%)
Query: 38 SPLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETE-------APGSSTHVGAGNSSDPAT 90
SP +P+PG ERRG RP T +L ET P + +G+S A+
Sbjct: 301 SPRPASPVPGSERRGSRPEMTPVSLRSTKEGPETPPRPRDQLPPHPRSRRYSGDSDSSAS 360
Query: 91 SRLGGSRG--------------PHPTLPPG-PAGSLVFPERRGSLQGGRDRGR-----WG 130
S G G P L G PA P R + DRGR G
Sbjct: 361 SAQSGPLGTRSDDTGTGPRRERPSRRLTTGTPASPRRPPALRSQSRDRLDRGRPRGAPGG 420
Query: 131 RWVRRRVPCPLPGLRPHERAGAALLATCRGNAPTPSACLTWLESKNKKNYAAGEACGGEK 190
R + VP P R R A+L R S W+ G GG
Sbjct: 421 RGAQLSVPSPARRARSQSREEQAVLLVRRDRDGQHS----WV--------PRGRGSGGSG 468
Query: 191 RRFHVSPVLRPDRTPRAFRALSQRP 215
R +P R PR R S P
Sbjct: 469 RSTPQTPRARSPAAPRLSRVSSPSP 493
>gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo
sapiens]
Length = 756
Score = 38.1 bits (87), Expect = 0.006
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 73 APGSSTHVGAGNSSDPATSRLGGSRGPHPTLPP---GPAGSLVFPERRG 118
APG++ GA S+ PA GG R P P+ PP GP G L P+ G
Sbjct: 59 APGAAADGGARWSAGPAPGLEGGPRDPGPSAPPPRSGPRGQLASPDAPG 107
Score = 30.0 bits (66), Expect = 1.7
Identities = 26/87 (29%), Positives = 31/87 (35%), Gaps = 12/87 (13%)
Query: 42 RNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPH- 100
R L P+ GP P P L +FS TE P G + + A RL GS H
Sbjct: 97 RGQLASPDAPGPGPRSEAPLPELDPLFSWTEEP---EECGPASCPESAPFRLQGSSSSHR 153
Query: 101 --------PTLPPGPAGSLVFPERRGS 119
P AG L + GS
Sbjct: 154 ARGEVDVFSPFPAPTAGELALEQGPGS 180
>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
sapiens]
Length = 355
Score = 37.0 bits (84), Expect = 0.014
Identities = 48/168 (28%), Positives = 58/168 (34%), Gaps = 41/168 (24%)
Query: 6 PRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIPTLFLA 65
PRGS T+ A A +++ G G+ S S + R LP R
Sbjct: 117 PRGSGPTYCAGAGNSRAGGGLTKYNSAHS--SSRVPRPRLPSQRR--------------- 159
Query: 66 GVFSETEAPGSSTHVGAGNSSDPATSRLGGS-------RGPHPTLPPGPAGSLVFPERRG 118
G+S +G G S A LGG RGPH T P P P G
Sbjct: 160 ---------GASCGLGPGPESRAARQGLGGRSARARTRRGPHRTRRPEPG-----PHHTG 205
Query: 119 SLQGGRDRGRWGRWVRRRVPCPLPGLRPHERAG---AALLATCRGNAP 163
+ Q G G GR G H R G AA A C G +P
Sbjct: 206 ARQAGPLPGTRGRTRAAGTGSAARGPARHLRGGSVAAAAAARCLGLSP 253
>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
sapiens]
Length = 355
Score = 37.0 bits (84), Expect = 0.014
Identities = 48/168 (28%), Positives = 58/168 (34%), Gaps = 41/168 (24%)
Query: 6 PRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIPTLFLA 65
PRGS T+ A A +++ G G+ S S + R LP R
Sbjct: 117 PRGSGPTYCAGAGNSRAGGGLTKYNSAHS--SSRVPRPRLPSQRR--------------- 159
Query: 66 GVFSETEAPGSSTHVGAGNSSDPATSRLGGS-------RGPHPTLPPGPAGSLVFPERRG 118
G+S +G G S A LGG RGPH T P P P G
Sbjct: 160 ---------GASCGLGPGPESRAARQGLGGRSARARTRRGPHRTRRPEPG-----PHHTG 205
Query: 119 SLQGGRDRGRWGRWVRRRVPCPLPGLRPHERAG---AALLATCRGNAP 163
+ Q G G GR G H R G AA A C G +P
Sbjct: 206 ARQAGPLPGTRGRTRAAGTGSAARGPARHLRGGSVAAAAAARCLGLSP 253
>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
sapiens]
Length = 355
Score = 37.0 bits (84), Expect = 0.014
Identities = 48/168 (28%), Positives = 58/168 (34%), Gaps = 41/168 (24%)
Query: 6 PRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIPTLFLA 65
PRGS T+ A A +++ G G+ S S + R LP R
Sbjct: 117 PRGSGPTYCAGAGNSRAGGGLTKYNSAHS--SSRVPRPRLPSQRR--------------- 159
Query: 66 GVFSETEAPGSSTHVGAGNSSDPATSRLGGS-------RGPHPTLPPGPAGSLVFPERRG 118
G+S +G G S A LGG RGPH T P P P G
Sbjct: 160 ---------GASCGLGPGPESRAARQGLGGRSARARTRRGPHRTRRPEPG-----PHHTG 205
Query: 119 SLQGGRDRGRWGRWVRRRVPCPLPGLRPHERAG---AALLATCRGNAP 163
+ Q G G GR G H R G AA A C G +P
Sbjct: 206 ARQAGPLPGTRGRTRAAGTGSAARGPARHLRGGSVAAAAAARCLGLSP 253
>gi|194272180 plexin B1 [Homo sapiens]
Length = 2135
Score = 37.0 bits (84), Expect = 0.014
Identities = 30/95 (31%), Positives = 37/95 (38%), Gaps = 12/95 (12%)
Query: 37 GSPLDRNPLPGPERRGPRPPQTIPTLFLAGVFSE--TEAPGSSTHVGAGNSSDPATSRLG 94
GSPL P P + GP PT F E +P S + V A +DP
Sbjct: 752 GSPLHEEPSPPSPQNGPGTAVPAPTDFRPSATPEDLLASPLSPSEVAAVPPADP------ 805
Query: 95 GSRGPHPT----LPPGPAGSLVFPERRGSLQGGRD 125
G HPT LPP + FP GS++ D
Sbjct: 806 GPEALHPTVPLDLPPATVPATTFPGAMGSVKPALD 840
>gi|40254442 plexin B1 [Homo sapiens]
Length = 2135
Score = 37.0 bits (84), Expect = 0.014
Identities = 30/95 (31%), Positives = 37/95 (38%), Gaps = 12/95 (12%)
Query: 37 GSPLDRNPLPGPERRGPRPPQTIPTLFLAGVFSE--TEAPGSSTHVGAGNSSDPATSRLG 94
GSPL P P + GP PT F E +P S + V A +DP
Sbjct: 752 GSPLHEEPSPPSPQNGPGTAVPAPTDFRPSATPEDLLASPLSPSEVAAVPPADP------ 805
Query: 95 GSRGPHPT----LPPGPAGSLVFPERRGSLQGGRD 125
G HPT LPP + FP GS++ D
Sbjct: 806 GPEALHPTVPLDLPPATVPATTFPGAMGSVKPALD 840
>gi|13899309 ribosomal protein S6 kinase-like 1 [Homo sapiens]
Length = 541
Score = 37.0 bits (84), Expect = 0.014
Identities = 32/102 (31%), Positives = 37/102 (36%), Gaps = 10/102 (9%)
Query: 32 LFLILGSPLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATS 91
L L+ + L PG +R PP+T P L LAG EAP + A TS
Sbjct: 226 LNLLTPARLPSGHAPGQDRIALEPPRTSPNLLLAG-----EAPSTRPQREAEGEPTARTS 280
Query: 92 RLGGSRGPHPTLPPGPAGSLVFPERRGSLQGGRDRGRWGRWV 133
G S LP P G L RR R WV
Sbjct: 281 TSGSS-----DLPKAPGGHLHLQARRAGQNSDAGPPRGLTWV 317
>gi|21389357 MAPK-interacting and spindle-stabilizing protein [Homo
sapiens]
Length = 245
Score = 36.6 bits (83), Expect = 0.018
Identities = 35/125 (28%), Positives = 45/125 (36%), Gaps = 19/125 (15%)
Query: 37 GSPLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVG--AGNSSDPATSRLG 94
G P +PGP GP P +P L + P ++ +G SS P +G
Sbjct: 99 GGPYPAPTVPGPGPTGPYPTPNMPFPELPRPYGAPTDPAAAGPLGPWGSMSSGPWAPGMG 158
Query: 95 G----------SRGPHPTLPPGPAGSLVFPERRGSLQGGRDRGRWGRWVRRRVPC---PL 141
G S GP+P PP A P G++ G WG P P
Sbjct: 159 GQYPTPNMPYPSPGPYPAPPPPQAPGAAPPVPWGTV----PPGAWGPPAPYPAPTGSYPT 214
Query: 142 PGLRP 146
PGL P
Sbjct: 215 PGLYP 219
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 36.2 bits (82), Expect = 0.023
Identities = 36/122 (29%), Positives = 46/122 (37%), Gaps = 12/122 (9%)
Query: 5 GPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIPTLFL 64
GPRG+P A+ A+ RG L G+ D P G P +P +
Sbjct: 1180 GPRGNPG-----AQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAII 1234
Query: 65 AGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRG-------PHPTLPPGPAGSLVFPERR 117
G PGS GA P S + G +G P P PPG AG + P R
Sbjct: 1235 PGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRL 1294
Query: 118 GS 119
G+
Sbjct: 1295 GA 1296
Score = 32.3 bits (72), Expect = 0.34
Identities = 39/133 (29%), Positives = 49/133 (36%), Gaps = 22/133 (16%)
Query: 5 GPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERR----GPRPPQTIP 60
GPRG P + GR + R + G N L G + R GP+ IP
Sbjct: 789 GPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGL----NGLKGQQGRRGKTGPKGDPGIP 844
Query: 61 TLFLAGVFSETEAPGSSTHVG----AGNSSDPATSRLGGSRG----------PHPTLPPG 106
L +G ET +PG H G G P + G G P PPG
Sbjct: 845 GLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGPPG 904
Query: 107 PAGSLVFPERRGS 119
P G+ P +RGS
Sbjct: 905 PPGNPGTPGQRGS 917
Score = 28.9 bits (63), Expect = 3.7
Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 65 AGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRG-------PHPTLPPGPAGSLVFPERR 117
AG+ + AP + DP G +G P P PPGP G FP
Sbjct: 150 AGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAM 209
Query: 118 G 118
G
Sbjct: 210 G 210
Score = 28.1 bits (61), Expect = 6.3
Identities = 28/81 (34%), Positives = 31/81 (38%), Gaps = 17/81 (20%)
Query: 44 PLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTL 103
P+PGP GP P P G PGS G DP G G P +
Sbjct: 653 PVPGPP--GPPGPPGHP-----GPQGPPGIPGS-----LGKCGDPGLPGPDGEPGI-PGI 699
Query: 104 ----PPGPAGSLVFPERRGSL 120
PPGP G FP +GSL
Sbjct: 700 GFPGPPGPKGDQGFPGTKGSL 720
Score = 27.7 bits (60), Expect = 8.3
Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 46 PGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPP 105
PG R G R P L G E PG G+ + L GS GP P
Sbjct: 383 PGSSRPGLRGAPGWPGL--KGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGP-----P 435
Query: 106 GPAGSLVF 113
GP G +VF
Sbjct: 436 GPPGDIVF 443
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 36.2 bits (82), Expect = 0.023
Identities = 36/122 (29%), Positives = 46/122 (37%), Gaps = 12/122 (9%)
Query: 5 GPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIPTLFL 64
GPRG+P A+ A+ RG L G+ D P G P +P +
Sbjct: 1180 GPRGNPG-----AQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAII 1234
Query: 65 AGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRG-------PHPTLPPGPAGSLVFPERR 117
G PGS GA P S + G +G P P PPG AG + P R
Sbjct: 1235 PGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRL 1294
Query: 118 GS 119
G+
Sbjct: 1295 GA 1296
Score = 32.3 bits (72), Expect = 0.34
Identities = 39/133 (29%), Positives = 49/133 (36%), Gaps = 22/133 (16%)
Query: 5 GPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERR----GPRPPQTIP 60
GPRG P + GR + R + G N L G + R GP+ IP
Sbjct: 789 GPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGL----NGLKGQQGRRGKTGPKGDPGIP 844
Query: 61 TLFLAGVFSETEAPGSSTHVG----AGNSSDPATSRLGGSRG----------PHPTLPPG 106
L +G ET +PG H G G P + G G P PPG
Sbjct: 845 GLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGPPG 904
Query: 107 PAGSLVFPERRGS 119
P G+ P +RGS
Sbjct: 905 PPGNPGTPGQRGS 917
Score = 28.9 bits (63), Expect = 3.7
Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 65 AGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRG-------PHPTLPPGPAGSLVFPERR 117
AG+ + AP + DP G +G P P PPGP G FP
Sbjct: 150 AGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAM 209
Query: 118 G 118
G
Sbjct: 210 G 210
Score = 28.1 bits (61), Expect = 6.3
Identities = 28/81 (34%), Positives = 31/81 (38%), Gaps = 17/81 (20%)
Query: 44 PLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTL 103
P+PGP GP P P G PGS G DP G G P +
Sbjct: 653 PVPGPP--GPPGPPGHP-----GPQGPPGIPGS-----LGKCGDPGLPGPDGEPGI-PGI 699
Query: 104 ----PPGPAGSLVFPERRGSL 120
PPGP G FP +GSL
Sbjct: 700 GFPGPPGPKGDQGFPGTKGSL 720
Score = 27.7 bits (60), Expect = 8.3
Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 46 PGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPP 105
PG R G R P L G E PG G+ + L GS GP P
Sbjct: 383 PGSSRPGLRGAPGWPGL--KGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGP-----P 435
Query: 106 GPAGSLVF 113
GP G +VF
Sbjct: 436 GPPGDIVF 443
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 36.2 bits (82), Expect = 0.023
Identities = 36/122 (29%), Positives = 46/122 (37%), Gaps = 12/122 (9%)
Query: 5 GPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIPTLFL 64
GPRG+P A+ A+ RG L G+ D P G P +P +
Sbjct: 1180 GPRGNPG-----AQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAII 1234
Query: 65 AGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRG-------PHPTLPPGPAGSLVFPERR 117
G PGS GA P S + G +G P P PPG AG + P R
Sbjct: 1235 PGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRL 1294
Query: 118 GS 119
G+
Sbjct: 1295 GA 1296
Score = 32.3 bits (72), Expect = 0.34
Identities = 39/133 (29%), Positives = 49/133 (36%), Gaps = 22/133 (16%)
Query: 5 GPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERR----GPRPPQTIP 60
GPRG P + GR + R + G N L G + R GP+ IP
Sbjct: 789 GPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGL----NGLKGQQGRRGKTGPKGDPGIP 844
Query: 61 TLFLAGVFSETEAPGSSTHVG----AGNSSDPATSRLGGSRG----------PHPTLPPG 106
L +G ET +PG H G G P + G G P PPG
Sbjct: 845 GLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGPPG 904
Query: 107 PAGSLVFPERRGS 119
P G+ P +RGS
Sbjct: 905 PPGNPGTPGQRGS 917
Score = 28.9 bits (63), Expect = 3.7
Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 65 AGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRG-------PHPTLPPGPAGSLVFPERR 117
AG+ + AP + DP G +G P P PPGP G FP
Sbjct: 150 AGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAM 209
Query: 118 G 118
G
Sbjct: 210 G 210
Score = 28.1 bits (61), Expect = 6.3
Identities = 28/81 (34%), Positives = 31/81 (38%), Gaps = 17/81 (20%)
Query: 44 PLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTL 103
P+PGP GP P P G PGS G DP G G P +
Sbjct: 653 PVPGPP--GPPGPPGHP-----GPQGPPGIPGS-----LGKCGDPGLPGPDGEPGI-PGI 699
Query: 104 ----PPGPAGSLVFPERRGSL 120
PPGP G FP +GSL
Sbjct: 700 GFPGPPGPKGDQGFPGTKGSL 720
Score = 27.7 bits (60), Expect = 8.3
Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 46 PGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPP 105
PG R G R P L G E PG G+ + L GS GP P
Sbjct: 383 PGSSRPGLRGAPGWPGL--KGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGP-----P 435
Query: 106 GPAGSLVF 113
GP G +VF
Sbjct: 436 GPPGDIVF 443
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 36.2 bits (82), Expect = 0.023
Identities = 36/122 (29%), Positives = 46/122 (37%), Gaps = 12/122 (9%)
Query: 5 GPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIPTLFL 64
GPRG+P A+ A+ RG L G+ D P G P +P +
Sbjct: 1180 GPRGNPG-----AQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAII 1234
Query: 65 AGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRG-------PHPTLPPGPAGSLVFPERR 117
G PGS GA P S + G +G P P PPG AG + P R
Sbjct: 1235 PGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRL 1294
Query: 118 GS 119
G+
Sbjct: 1295 GA 1296
Score = 32.3 bits (72), Expect = 0.34
Identities = 39/133 (29%), Positives = 49/133 (36%), Gaps = 22/133 (16%)
Query: 5 GPRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERR----GPRPPQTIP 60
GPRG P + GR + R + G N L G + R GP+ IP
Sbjct: 789 GPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGL----NGLKGQQGRRGKTGPKGDPGIP 844
Query: 61 TLFLAGVFSETEAPGSSTHVG----AGNSSDPATSRLGGSRG----------PHPTLPPG 106
L +G ET +PG H G G P + G G P PPG
Sbjct: 845 GLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDGVIGMMGFPGAIGPPG 904
Query: 107 PAGSLVFPERRGS 119
P G+ P +RGS
Sbjct: 905 PPGNPGTPGQRGS 917
Score = 28.9 bits (63), Expect = 3.7
Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 65 AGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRG-------PHPTLPPGPAGSLVFPERR 117
AG+ + AP + DP G +G P P PPGP G FP
Sbjct: 150 AGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPGPPGFFGFPGAM 209
Query: 118 G 118
G
Sbjct: 210 G 210
Score = 28.1 bits (61), Expect = 6.3
Identities = 28/81 (34%), Positives = 31/81 (38%), Gaps = 17/81 (20%)
Query: 44 PLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTL 103
P+PGP GP P P G PGS G DP G G P +
Sbjct: 653 PVPGPP--GPPGPPGHP-----GPQGPPGIPGS-----LGKCGDPGLPGPDGEPGI-PGI 699
Query: 104 ----PPGPAGSLVFPERRGSL 120
PPGP G FP +GSL
Sbjct: 700 GFPGPPGPKGDQGFPGTKGSL 720
Score = 27.7 bits (60), Expect = 8.3
Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 46 PGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTLPP 105
PG R G R P L G E PG G+ + L GS GP P
Sbjct: 383 PGSSRPGLRGAPGWPGL--KGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGP-----P 435
Query: 106 GPAGSLVF 113
GP G +VF
Sbjct: 436 GPPGDIVF 443
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 35.8 bits (81), Expect = 0.030
Identities = 28/73 (38%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 44 PLPGPERRGPRPPQTIPTLFLAGVFSETE----APGSSTHV-GAGNSSDPATSRLG--GS 96
PL GP RG RPP P LF F + PG V G G P + G
Sbjct: 262 PLAGPPNRGDRPPP--PVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPP 319
Query: 97 RGPHPTLPPGPAG 109
GP P PPGP G
Sbjct: 320 PGPFPPRPPGPLG 332
>gi|222136583 inositol polyphosphate phosphatase-like 1 [Homo sapiens]
Length = 1258
Score = 35.4 bits (80), Expect = 0.040
Identities = 52/188 (27%), Positives = 70/188 (37%), Gaps = 23/188 (12%)
Query: 53 PRPPQT----IPTLFLAGVFSETEAPGSSTH----VGAGNSSDPATSRLGGSRGPHPTLP 104
P PP +P+ V AP H VG G+SSD + G P P P
Sbjct: 999 PEPPSPARAPVPSATKNKVAITVPAPQLGHHRHPRVGEGSSSDEES----GGTLPPPDFP 1054
Query: 105 PGPA--GSLVFPERRGSLQGGRDRGRWGRWVRRRVP---CPLPGLRPHERAGAALLATCR 159
P P ++ P L G RGR G R P P P L P + L
Sbjct: 1055 PPPLPDSAIFLPPSLDPLPGPVVRGRGGAEARGPPPPKAHPRPPLPPGPSPASTFLGEVA 1114
Query: 160 GNAPTPSACLTWLESKNKKNYAAGEACGGEKRRFHVSPV-LRPDR-TPRAF-RALSQRPP 216
+ L ++ ++ +YA G + P+ L+P R P + R LS PP
Sbjct: 1115 SGDDRSCSVLQMAKTLSEVDYA---PAGPARSALLPGPLELQPPRGLPSDYGRPLSFPPP 1171
Query: 217 RVPELQQE 224
R+ E QE
Sbjct: 1172 RIRESIQE 1179
Score = 29.3 bits (64), Expect = 2.8
Identities = 39/157 (24%), Positives = 58/157 (36%), Gaps = 18/157 (11%)
Query: 39 PLDRNPLPGP--------ERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPAT 90
P +PLPGP E RGP PP+ P L + A V +G+ +
Sbjct: 1066 PPSLDPLPGPVVRGRGGAEARGPPPPKAHPRPPLPP--GPSPASTFLGEVASGDDRSCSV 1123
Query: 91 SRLGGSRGPHPTLPPGPAGSLVFPERRGSLQGGRDRGRWGRWVRRRVPCPLPGLRPHERA 150
++ + P GPA S + P G L+ RG + R + P P +R +
Sbjct: 1124 LQMAKTLSEVDYAPAGPARSALLP---GPLELQPPRGLPSDY-GRPLSFPPPRIRESIQE 1179
Query: 151 GAALLATC----RGNAPTPSACLTWLESKNKKNYAAG 183
A A C R + + WL + + Y G
Sbjct: 1180 DLAEEAPCLQGGRASGLGEAGMSAWLRAIGLERYEEG 1216
>gi|117938768 GNAS complex locus alex [Homo sapiens]
Length = 626
Score = 34.7 bits (78), Expect = 0.068
Identities = 42/153 (27%), Positives = 53/153 (34%), Gaps = 20/153 (13%)
Query: 37 GSPLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGA-------GNSSDPA 89
G PL P+P P R P PQ IPT + PG + G P
Sbjct: 370 GQPLPPQPIPTPGR--PLTPQPIPTPGRPLTPQPIQMPGRPLRLPPPLRLLRPGQPMSPQ 427
Query: 90 TSRLGGSRGPHPTLPPGPAGSL--------VFPERRGSLQGGRDRGRWGRWVRRRVPCPL 141
+ G P P LPPG S P+ R R R + R + L
Sbjct: 428 LRQTQGLPLPQPLLPPGQPKSAGRPLQPLPPGPDARSISDPPAPRSRLPIRLLRGLLARL 487
Query: 142 PGLRPHERAGAALLATCRGNAPTPSACLTWLES 174
PG A AA T +G P+A +T E+
Sbjct: 488 PGGASPRAAAAAACTTMKG---WPAATMTPAET 517
>gi|78499633 phospholipase C, eta 2 [Homo sapiens]
Length = 1416
Score = 34.3 bits (77), Expect = 0.088
Identities = 55/222 (24%), Positives = 70/222 (31%), Gaps = 54/222 (24%)
Query: 44 PLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGPHPTL 103
P PGP GP PP +PT G PG++ ++ +P SR P P
Sbjct: 1010 PAPGP---GPPPPAAVPTSSSQGRPPYPTGPGANVASPLEDTEEPRDSR------PRPCN 1060
Query: 104 PPGPAGSLVFPERRGSLQGGRDRGRW---------------------GRWVRRRVPCPLP 142
G G+ + GS GR + R G W P P P
Sbjct: 1061 GEGAGGA--YERAPGSQTDGRSQPRTLGHLPVIRRVKSEGQVPTEPLGGWRPLAAPFPAP 1118
Query: 143 GLRPHERAGAAL---LATC--RGNAPTPSAC----------LTWLESKNKKNYAAGEACG 187
+ L L C R + + S+ L L + AG G
Sbjct: 1119 AVYSDATGSDPLWQRLEPCGHRDSVSSSSSMSSSDTVIDLSLPSLGLGRSRENLAGAHMG 1178
Query: 188 GEKRRFHVSPVLRPDRTPRA-------FRALSQRPPRVPELQ 222
R H + RPD P RA QRPP ELQ
Sbjct: 1179 RLPPRPHSASAARPDLPPVTKSKSNPNLRATGQRPPIPDELQ 1220
>gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [Homo
sapiens]
Length = 1636
Score = 34.3 bits (77), Expect = 0.088
Identities = 59/216 (27%), Positives = 83/216 (38%), Gaps = 43/216 (19%)
Query: 39 PLDRNPLPGPERRGPRPPQT-IPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGG-- 95
PL L P+ G PPQ+ P GV + P T + G + DP + G
Sbjct: 977 PLQHPHLFPPQAPGLLPPQSPYPYAPQPGVLGQPPPP-LHTQLYPGPAQDPLPAHSGALP 1035
Query: 96 ------SRGPHPTLPPGPAGSL--VFPER-----RGSLQGGRDRGRWGRWVRRRVPCPLP 142
+ PHP L GPA S + P+ RG G+ V P P P
Sbjct: 1036 FPSPGPPQPPHPPLAYGPAPSTRPMGPQAAPLTIRGPSSAGQSTPS-PHLVPSPAPSPGP 1094
Query: 143 GLRPHERAGAALLATC--RGNAPTPSACLTWLESKNKKNYAAGEACGGEKRRFHVSPVLR 200
G P R AA C RG +A L S + + ++ GG + P+L+
Sbjct: 1095 GPVP-PRPPAAEPPPCLRRG-----AAAADLLSSSPESQHGGTQSPGGGQ------PLLQ 1142
Query: 201 P-------DRTPRAFRALS----QRPPRVPELQQEM 225
P R P+A R + + P R+ +LQQE+
Sbjct: 1143 PTKVDAAEGRRPQALRLIERDPYEHPERLRQLQQEL 1178
>gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]
Length = 610
Score = 34.3 bits (77), Expect = 0.088
Identities = 36/109 (33%), Positives = 42/109 (38%), Gaps = 12/109 (11%)
Query: 37 GSPLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGS 96
G P D P PGP+ GP P GV E PGS G + A S + G
Sbjct: 452 GKPGDMGP-PGPQ--GPPGKDGPP-----GVKGENGHPGSPGEKGEKGETGQAGSPVPGL 503
Query: 97 RGPHPTLPPGPAGSLVFPERRG--SLQGGRDRGRWGRWVRRRVPCPLPG 143
GP PPGP G P +G L G + + R P LPG
Sbjct: 504 PGPEG--PPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPG 550
>gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens]
Length = 668
Score = 34.3 bits (77), Expect = 0.088
Identities = 36/109 (33%), Positives = 42/109 (38%), Gaps = 12/109 (11%)
Query: 37 GSPLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGS 96
G P D P PGP+ GP P GV E PGS G + A S + G
Sbjct: 481 GKPGDMGP-PGPQ--GPPGKDGPP-----GVKGENGHPGSPGEKGEKGETGQAGSPVPGL 532
Query: 97 RGPHPTLPPGPAGSLVFPERRG--SLQGGRDRGRWGRWVRRRVPCPLPG 143
GP PPGP G P +G L G + + R P LPG
Sbjct: 533 PGPEG--PPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPG 579
>gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens]
Length = 690
Score = 34.3 bits (77), Expect = 0.088
Identities = 36/109 (33%), Positives = 42/109 (38%), Gaps = 12/109 (11%)
Query: 37 GSPLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGS 96
G P D P PGP+ GP P GV E PGS G + A S + G
Sbjct: 503 GKPGDMGP-PGPQ--GPPGKDGPP-----GVKGENGHPGSPGEKGEKGETGQAGSPVPGL 554
Query: 97 RGPHPTLPPGPAGSLVFPERRG--SLQGGRDRGRWGRWVRRRVPCPLPG 143
GP PPGP G P +G L G + + R P LPG
Sbjct: 555 PGPEG--PPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPG 601
>gi|22027580 alpha 1 type XIII collagen isoform 6 [Homo sapiens]
Length = 702
Score = 34.3 bits (77), Expect = 0.088
Identities = 36/109 (33%), Positives = 42/109 (38%), Gaps = 12/109 (11%)
Query: 37 GSPLDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGS 96
G P D P PGP+ GP P GV E PGS G + A S + G
Sbjct: 503 GKPGDMGP-PGPQ--GPPGKDGPP-----GVKGENGHPGSPGEKGEKGETGQAGSPVPGL 554
Query: 97 RGPHPTLPPGPAGSLVFPERRG--SLQGGRDRGRWGRWVRRRVPCPLPG 143
GP PPGP G P +G L G + + R P LPG
Sbjct: 555 PGPEG--PPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPG 601
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 33.9 bits (76), Expect = 0.12
Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 44 PLPGPERRGPRPPQTIPTLFLAGVFSETE--APGSSTHVGAGNSSDPATSRLGGSRGPHP 101
P P + P PP P G+ + AP + PATS G+ P
Sbjct: 1255 PATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPA 1314
Query: 102 TLPPGPAGSLVFPERRGS 119
PP P GS P +G+
Sbjct: 1315 ATPPSPKGSPGTPPPKGA 1332
Score = 27.7 bits (60), Expect = 8.3
Identities = 30/125 (24%), Positives = 42/125 (33%), Gaps = 17/125 (13%)
Query: 6 PRGSPETFVACAKSAQFGRGVIFVRSLFLILGSPLDRNPLPGPERRGPRPPQTIPTLFLA 65
P+G+P T A S + G ++ G+P P + GP P
Sbjct: 1053 PKGAPTTPAATLPSPKGGPATPSLK------GAPTPPAATPPSPKGGPATPSPKGAPMPP 1106
Query: 66 GVFSETEAPGSSTHVGAGNSSDPAT---SRLGGSRGPHP--------TLPPGPAGSLVFP 114
+ G +T G + PA S GG P P PP P G L P
Sbjct: 1107 AATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATP 1166
Query: 115 ERRGS 119
+G+
Sbjct: 1167 PPKGA 1171
>gi|62362414 c-abl oncogene 1, receptor tyrosine kinase isoform a
[Homo sapiens]
Length = 1130
Score = 33.5 bits (75), Expect = 0.15
Identities = 40/154 (25%), Positives = 58/154 (37%), Gaps = 23/154 (14%)
Query: 40 LDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGP 99
++ +P P P+P + T+ A E G + +G +++P T G
Sbjct: 802 MESSPGSSPPNLTPKPLRRQVTVAPASGLPHKEEAGKGSALGTPAAAEPVTPTSKAGSGA 861
Query: 100 HPTLPPGPA-GSLVFPERRGSLQGGRDRGRWGRWVRRRVPCPLPGLRPHERAGAALLATC 158
GPA S V + S GRD+G+ + R P P P P AG A
Sbjct: 862 PGGTSKGPAEESRVRRHKHSSESPGRDKGK----LSRLKPAPPP--PPAASAGKA----- 910
Query: 159 RGNAPTPSACLTWLESKNKKNYAAGEACGGEKRR 192
G P S++ AAGEA G K +
Sbjct: 911 -GGKP----------SQSPSQEAAGEAVLGAKTK 933
>gi|62362412 c-abl oncogene 1, receptor tyrosine kinase isoform b
[Homo sapiens]
Length = 1149
Score = 33.5 bits (75), Expect = 0.15
Identities = 40/154 (25%), Positives = 58/154 (37%), Gaps = 23/154 (14%)
Query: 40 LDRNPLPGPERRGPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGP 99
++ +P P P+P + T+ A E G + +G +++P T G
Sbjct: 821 MESSPGSSPPNLTPKPLRRQVTVAPASGLPHKEEAGKGSALGTPAAAEPVTPTSKAGSGA 880
Query: 100 HPTLPPGPA-GSLVFPERRGSLQGGRDRGRWGRWVRRRVPCPLPGLRPHERAGAALLATC 158
GPA S V + S GRD+G+ + R P P P P AG A
Sbjct: 881 PGGTSKGPAEESRVRRHKHSSESPGRDKGK----LSRLKPAPPP--PPAASAGKA----- 929
Query: 159 RGNAPTPSACLTWLESKNKKNYAAGEACGGEKRR 192
G P S++ AAGEA G K +
Sbjct: 930 -GGKP----------SQSPSQEAAGEAVLGAKTK 952
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.139 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,749,499
Number of Sequences: 37866
Number of extensions: 808762
Number of successful extensions: 3949
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 275
Number of HSP's that attempted gapping in prelim test: 3589
Number of HSP's gapped (non-prelim): 676
length of query: 225
length of database: 18,247,518
effective HSP length: 99
effective length of query: 126
effective length of database: 14,498,784
effective search space: 1826846784
effective search space used: 1826846784
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.