Guide to the Human Genome
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Name: PLXNB1 Sequence: fasta or formatted (2135aa) NCBI GI: 194272180
Description:

plexin B1

Referenced in:

Ras
Semaphorins

Other entries for this name:
alt mRNA [2135aa] plexin B1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2        175           3
 C cysteine            2.7         57           1
 D aspartate           5.3        114           2
 E glutamate           6.2        132           2
 F phenylalanine       2.8         59           2
 G glycine             7.7        165           3
 H histidine           2.4         51           2
 I isoleucine          2.6         55           3
 K lysine              2.3         50           2
 L leucine            11.1        236           3
 M methionine          1.5         32           1
 N asparagine          2.0         42           2
 P proline             8.9        190           3
 Q glutamine           4.8        102           2
 R arginine            6.1        131           4
 S serine              7.4        157           3
 T threonine           6.0        129           2
 V valine              8.1        172           3
 W tryptophan          1.2         26           1
 Y tyrosine            2.8         60           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   plexin B1 
PLXNB1                1.000   plexin B1 
PLXNB3                0.286   plexin B3 isoform 2 
PLXNB3                0.286   plexin B3 isoform 1 
PLXNB2                0.222   plexin B2 
PLXNA1                0.182   plexin A1 
PLXNA4                0.177   plexin A4 isoform 1 
PLXNA2                0.176   plexin A2 
PLXND1                0.169   plexin D1 
PLXNA3                0.168   plexin A3 
PLXNC1                0.088   plexin C1 
PLXNA4                0.022   plexin A4 isoform 2 
PLXNA4                0.022   plexin A4 isoform 3 
MET                   0.021   met proto-oncogene isoform b precursor 
MET                   0.018   met proto-oncogene isoform a precursor 
MST1R                 0.014   macrophage stimulating 1 receptor precursor 
NACA                  0.012   nascent polypeptide-associated complex alpha subuni...
MBD6                  0.010   methyl-CpG binding domain protein 6 
SEMA6C                0.010   semaphorin Y 
KIAA0754              0.009   hypothetical protein LOC643314 
SEMA4G                0.009   semaphorin 4G 
DIAPH1                0.009   diaphanous 1 isoform 2 
DIAPH1                0.009   diaphanous 1 isoform 1 
PKHD1L1               0.009   fibrocystin L 
SEMA6D                0.009   semaphorin 6D isoform 5 precursor 
SEMA6D                0.009   semaphorin 6D isoform 4 precursor 
SEMA6D                0.009   semaphorin 6D isoform 3 precursor 
SEMA6D                0.009   semaphorin 6D isoform 2 precursor 
FLJ22184              0.009   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.009   PREDICTED: hypothetical protein LOC80164 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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