Guide to the Human Genome
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Name: LOC728597 Sequence: fasta or formatted (714aa) NCBI GI: 239747673
Description:

PREDICTED: doublecortin domain-containing protein ENSP00000382097-like

Referenced in:

Neurons

Other entries for this name:
alt prot [510aa] PREDICTED: doublecortin domain-containing protein ENSP00000382097...
alt prot [530aa] PREDICTED: doublecortin domain-containing protein ENSP00000382097...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         59           2
 C cysteine            2.7         19           2
 D aspartate           3.4         24           1
 E glutamate           5.3         38           2
 F phenylalanine       3.5         25           2
 G glycine             7.6         54           2
 H histidine           3.1         22           1
 I isoleucine          4.2         30           3
 K lysine              4.9         35           3
 L leucine             8.0         57           2
 M methionine          1.0          7           1
 N asparagine          2.0         14           1
 P proline            10.8         77           2
 Q glutamine           3.1         22           1
 R arginine            7.3         52           3
 S serine              8.0         57           2
 T threonine           5.2         37           2
 V valine              7.0         50           2
 W tryptophan          2.0         14           1
 Y tyrosine            2.9         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: doublecortin domain-containing protein E... 
LOC728597             0.650   PREDICTED: doublecortin domain-containing protein E...
LOC728597             0.528   PREDICTED: doublecortin domain-containing protein E...
DCDC2                 0.107   doublecortin domain containing 2 
DCDC2B                0.086   doublecortin domain containing 2B 
DCLK2                 0.036   doublecortin-like kinase 2 isoform b 
DCLK2                 0.036   doublecortin-like kinase 2 isoform a 
DCX                   0.031   doublecortin isoform c 
DCX                   0.031   doublecortin isoform b 
DCX                   0.031   doublecortin isoform c 
DCX                   0.031   doublecortin isoform a 
DCLK1                 0.031   doublecortin-like kinase 1 
RP1L1                 0.027   retinitis pigmentosa 1-like 1 
RP1                   0.025   retinitis pigmentosa RP1 protein 
COL27A1               0.020   collagen, type XXVII, alpha 1 
SRCAP                 0.017   Snf2-related CBP activator protein 
MNT                   0.017   MAX binding protein 
GNAS                  0.016   GNAS complex locus alex 
FLJ22184              0.016   PREDICTED: hypothetical protein FLJ22184 
SALL3                 0.016   sal-like 3 
TBKBP1                0.015   TBK1 binding protein 1 
ZNF828                0.015   zinc finger protein 828 
FLJ22184              0.015   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.015   PREDICTED: hypothetical protein LOC80164 
GPR153                0.015   G protein-coupled receptor 153 
SELV                  0.015   selenoprotein V 
C6orf132              0.014   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.014   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.014   PREDICTED: hypothetical protein LOC647024 
BCORL1                0.014   BCL6 co-repressor-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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