Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 169204993
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169204993 PREDICTED: hypothetical protein LOC100130711 [Homo
sapiens]
(168 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169204993 PREDICTED: hypothetical protein LOC100130711 [Homo ... 351 1e-97
gi|169205515 PREDICTED: hypothetical protein LOC100130711 [Homo ... 351 1e-97
gi|169204464 PREDICTED: hypothetical protein LOC100130711 [Homo ... 351 1e-97
gi|32307166 Rho guanine exchange factor 15 [Homo sapiens] 42 3e-04
gi|163965366 nascent polypeptide-associated complex alpha subuni... 41 4e-04
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 40 0.001
gi|33946327 nucleoporin 214kDa [Homo sapiens] 39 0.002
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom... 39 0.002
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom... 39 0.002
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap... 39 0.002
gi|122937440 multiple EGF-like-domains 9 [Homo sapiens] 39 0.002
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 39 0.003
gi|133922582 zinc finger protein 358 [Homo sapiens] 39 0.003
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 38 0.004
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 38 0.005
gi|239757729 PREDICTED: hypothetical protein [Homo sapiens] 37 0.008
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 37 0.008
gi|239752222 PREDICTED: hypothetical protein [Homo sapiens] 37 0.008
gi|239746743 PREDICTED: hypothetical protein [Homo sapiens] 37 0.008
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 37 0.008
gi|169213703 PREDICTED: hypothetical protein [Homo sapiens] 37 0.010
gi|41350201 epsin 1 isoform c [Homo sapiens] 36 0.018
gi|194248095 epsin 1 isoform b [Homo sapiens] 36 0.018
gi|194272148 epsin 1 isoform a [Homo sapiens] 36 0.018
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 36 0.018
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 36 0.018
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 36 0.018
gi|22749387 zinc finger, CCHC domain containing 5 [Homo sapiens] 36 0.018
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 35 0.023
gi|224028289 tetratricopeptide repeat domain 28 [Homo sapiens] 35 0.030
>gi|169204993 PREDICTED: hypothetical protein LOC100130711 [Homo
sapiens]
Length = 168
Score = 351 bits (901), Expect = 1e-97
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MTKITPIPGADVQLPEAMGASSLGWKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHR 60
MTKITPIPGADVQLPEAMGASSLGWKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHR
Sbjct: 1 MTKITPIPGADVQLPEAMGASSLGWKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHR 60
Query: 61 SPRHRASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLPHPI 120
SPRHRASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLPHPI
Sbjct: 61 SPRHRASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLPHPI 120
Query: 121 PWLQSEGLSQNHQLLAVWASGESVRRNPQFLLIKNPSTVLTWKLQCDL 168
PWLQSEGLSQNHQLLAVWASGESVRRNPQFLLIKNPSTVLTWKLQCDL
Sbjct: 121 PWLQSEGLSQNHQLLAVWASGESVRRNPQFLLIKNPSTVLTWKLQCDL 168
>gi|169205515 PREDICTED: hypothetical protein LOC100130711 [Homo
sapiens]
Length = 168
Score = 351 bits (901), Expect = 1e-97
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MTKITPIPGADVQLPEAMGASSLGWKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHR 60
MTKITPIPGADVQLPEAMGASSLGWKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHR
Sbjct: 1 MTKITPIPGADVQLPEAMGASSLGWKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHR 60
Query: 61 SPRHRASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLPHPI 120
SPRHRASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLPHPI
Sbjct: 61 SPRHRASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLPHPI 120
Query: 121 PWLQSEGLSQNHQLLAVWASGESVRRNPQFLLIKNPSTVLTWKLQCDL 168
PWLQSEGLSQNHQLLAVWASGESVRRNPQFLLIKNPSTVLTWKLQCDL
Sbjct: 121 PWLQSEGLSQNHQLLAVWASGESVRRNPQFLLIKNPSTVLTWKLQCDL 168
>gi|169204464 PREDICTED: hypothetical protein LOC100130711 [Homo
sapiens]
Length = 168
Score = 351 bits (901), Expect = 1e-97
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MTKITPIPGADVQLPEAMGASSLGWKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHR 60
MTKITPIPGADVQLPEAMGASSLGWKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHR
Sbjct: 1 MTKITPIPGADVQLPEAMGASSLGWKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHR 60
Query: 61 SPRHRASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLPHPI 120
SPRHRASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLPHPI
Sbjct: 61 SPRHRASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLPHPI 120
Query: 121 PWLQSEGLSQNHQLLAVWASGESVRRNPQFLLIKNPSTVLTWKLQCDL 168
PWLQSEGLSQNHQLLAVWASGESVRRNPQFLLIKNPSTVLTWKLQCDL
Sbjct: 121 PWLQSEGLSQNHQLLAVWASGESVRRNPQFLLIKNPSTVLTWKLQCDL 168
>gi|32307166 Rho guanine exchange factor 15 [Homo sapiens]
Length = 841
Score = 41.6 bits (96), Expect = 3e-04
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 25 WKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRSPRHRASSGPVANQDSPKDGDPAS 84
W+PP L P+L P S AS+ SP SS P + S + P
Sbjct: 63 WEPPAASL------KPPALLPPSASRASLDSQTSPDSP----SSTPTPSPVSRRSASPEP 112
Query: 85 APAAPAPDQMRLPAGQPCSPL 105
AP +P P P+G PC+PL
Sbjct: 113 APRSPVPPPK--PSGSPCTPL 131
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 41.2 bits (95), Expect = 4e-04
Identities = 37/117 (31%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 6 PIPGADVQLPEAMGASSLGWKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRH--RSPR 63
P P + P GA + P TP +TP A+ PP+ + +P
Sbjct: 1226 PSPKGGLATPSPKGAPTT---PAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPP 1282
Query: 64 HRASSGP-VANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLPHP 119
H+ + P V SPK G PA++P AP PA P SP S P P G P P
Sbjct: 1283 HKGAPNPAVVTPPSPKGG-PATSPPKGAPTP---PAATPPSPKGSPGTPPPKGAPTP 1335
Score = 39.7 bits (91), Expect = 0.001
Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 28 PGTPLLLLEFASTPSLASPDRSEASMPPAHRHRSPRHR-ASSGPVANQDSPKDGDPASAP 86
P TP A + + +SP ++ A+ P SP + A + P A SPK G +P
Sbjct: 900 PATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSP 959
Query: 87 A-APAPDQMRLPAGQPCSPLHSTLLPRPMGLPHP 119
AP P PA P SP P P G P P
Sbjct: 960 KWAPTP-----PAATPPSPKGGPATPSPKGAPTP 988
Score = 39.3 bits (90), Expect = 0.002
Identities = 40/123 (32%), Positives = 43/123 (34%), Gaps = 20/123 (16%)
Query: 6 PIPGADVQLPEAMGASSLGWKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRSPRHR 65
P A Q P SS K TP A ASP A PPA SP+
Sbjct: 900 PATPAPKQAPALSMTSSSPKKARATP------APKGIPASPSPKGAPTPPAATPPSPKGG 953
Query: 66 --------ASSGPVANQDSPKDGDPASAP-AAPAPDQMRLPAGQPCSPLHSTLLPRPMGL 116
A + P A SPK G +P AP P PA P SP P P G
Sbjct: 954 PATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTP-----PAATPPSPKGGPATPSPKGA 1008
Query: 117 PHP 119
P P
Sbjct: 1009 PTP 1011
Score = 38.9 bits (89), Expect = 0.002
Identities = 44/131 (33%), Positives = 52/131 (39%), Gaps = 26/131 (19%)
Query: 5 TPIPGADVQLPEAMGASSLGWKPPGTPLLLLEFASTPSLASPDRSE----------ASMP 54
TP+P P A S G P TP L + A TP A+P + A MP
Sbjct: 1050 TPLPKGAPTTPAATLPSPKGG--PATPSL--KGAPTPPAATPPSPKGGPATPSPKGAPMP 1105
Query: 55 PAHRHRSPR-------HR-ASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLH 106
PA SP+ H+ A + P A SPK G A+ P AP PA P SP
Sbjct: 1106 PAATPPSPKGGLATPPHKGAPTTPAATPPSPK-GGLATPPPKGAP---TTPAATPPSPKG 1161
Query: 107 STLLPRPMGLP 117
P P G P
Sbjct: 1162 GLATPPPKGAP 1172
Score = 36.2 bits (82), Expect = 0.014
Identities = 38/124 (30%), Positives = 45/124 (36%), Gaps = 22/124 (17%)
Query: 6 PIPGADVQLPEAMGASSLGWKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRSPRHR 65
P P P GA + P +P +P+ A+P AS PPA SP+
Sbjct: 994 PSPKGGPATPSPKGAPTPPAVTPPSP------KGSPA-ATPFPKGASTPPAATPPSPKGS 1046
Query: 66 ---------ASSGPVANQDSPKDGDPA-SAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMG 115
A + P A SPK G S AP P PA P SP P P G
Sbjct: 1047 PAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTP-----PAATPPSPKGGPATPSPKG 1101
Query: 116 LPHP 119
P P
Sbjct: 1102 APMP 1105
Score = 35.0 bits (79), Expect = 0.030
Identities = 33/113 (29%), Positives = 43/113 (38%), Gaps = 6/113 (5%)
Query: 6 PIPGADVQLPEAMGASSLGWKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRSPRHR 65
P P D P + S K P TP+ E A+TPS D + ++ P ++P
Sbjct: 1396 PSPKGDPTSPAVIPLSPK--KAPATPVTR-EGAATPSKG--DLTPPAVTPVSLKKAPATS 1450
Query: 66 ASSGPVANQDSPKDGD-PASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLP 117
A G A S D PA P +P SP + P PMG P
Sbjct: 1451 APKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAP 1503
Score = 33.1 bits (74), Expect = 0.12
Identities = 33/115 (28%), Positives = 42/115 (36%), Gaps = 10/115 (8%)
Query: 6 PIPGADVQLPEAMGASSLGWKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRH---RSP 62
P P + P GA + P TP +TP + A+ PP+ + P
Sbjct: 1111 PSPKGGLATPPHKGAPTT---PAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPP 1167
Query: 63 RHRASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLP 117
A + P A SPK G +P AP PA P SP P P G P
Sbjct: 1168 PKGAPTTPAATPPSPKGGLATPSPKG-APTT---PAATPPSPKGGLATPSPKGAP 1218
Score = 32.0 bits (71), Expect = 0.26
Identities = 34/116 (29%), Positives = 44/116 (37%), Gaps = 12/116 (10%)
Query: 6 PIPGADVQLPEAMGASSLGWKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHR----S 61
P P + P GA + P TP +TP + A+ PP+ + S
Sbjct: 1134 PSPKGGLATPPPKGAPTT---PAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPS 1190
Query: 62 PRHRASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLP 117
P+ A + P A SPK G +P AP PA P SP P P G P
Sbjct: 1191 PKG-APTTPAATPPSPKGGLATPSPKG-APTT---PAATPPSPKGGLATPSPKGAP 1241
Score = 31.6 bits (70), Expect = 0.33
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 11/86 (12%)
Query: 38 ASTPSLASPDRSEASMPPAHRHRSPR------HRASSGPVANQDSPKDGDPASAPAAPAP 91
A+T S P A P A SP+ + V N PK+G PA PAP
Sbjct: 851 ATTHSPTPPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEG-----PATPAP 905
Query: 92 DQMRLPAGQPCSPLHSTLLPRPMGLP 117
Q + SP + P P G+P
Sbjct: 906 KQAPALSMTSSSPKKARATPAPKGIP 931
Score = 31.6 bits (70), Expect = 0.33
Identities = 41/142 (28%), Positives = 48/142 (33%), Gaps = 24/142 (16%)
Query: 1 MTKITPIPGADVQLPEAMGASSLGWKPPGTPLLLLEFASTPS--LASPDRSEASMPPAHR 58
MT +P P+ + AS P G P +P A+P A PPA
Sbjct: 913 MTSSSPKKARATPAPKGIPASP---SPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAAT 969
Query: 59 HRSPR--------HRASSGPVANQDSPKDG----DPASAPAAPA---PDQMRLPAGQPCS 103
SP+ A + P A SPK G P AP PA P PA P
Sbjct: 970 PPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFP 1029
Query: 104 PLHST----LLPRPMGLPHPIP 121
ST P P G P P
Sbjct: 1030 KGASTPPAATPPSPKGSPAATP 1051
Score = 30.0 bits (66), Expect = 0.97
Identities = 28/96 (29%), Positives = 36/96 (37%), Gaps = 24/96 (25%)
Query: 44 ASPDRSEASMPPAHRHRSPR--------HRASSGPVANQDSPKDG------------DPA 83
A+P A PPA SP+ A + P SPK PA
Sbjct: 978 ATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPA 1037
Query: 84 SAPAAP--APDQMRLPAGQPCSPLHSTLLPRPMGLP 117
+ P +P +P LP G P +P + LP P G P
Sbjct: 1038 ATPPSPKGSPAATPLPKGAPTTP--AATLPSPKGGP 1071
Score = 30.0 bits (66), Expect = 0.97
Identities = 34/116 (29%), Positives = 47/116 (40%), Gaps = 21/116 (18%)
Query: 1 MTKITPIPGA--DVQLPEAMGASSLGWKPPGTPLLLLEFASTP--SLASPDRSEASMPPA 56
++K TP A + +P AM S P TP + TP + A+P EAS PPA
Sbjct: 1534 LSKKTPATLAPKEALIPPAMTVPS----PKKTPAI-----PTPKEAPATPSSKEASSPPA 1584
Query: 57 HRHRSPRHRASSG-----PVANQDSPKDGDPASAPAAPAPDQ---MRLPAGQPCSP 104
+ + S P SPK+ A P+P++ P G P SP
Sbjct: 1585 VTPSTYKGAPSPKELLIPPAVTSPSPKEAPTPPAVTPPSPEKGPATPAPKGTPTSP 1640
Score = 28.9 bits (63), Expect = 2.2
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 10/109 (9%)
Query: 13 QLPEAMGASSL--GWKPPGTPLL--------LLEFASTPSLASPDRSEASMPPAHRHRSP 62
++P+++ + SL PPGT + L AS+P + S AS + +
Sbjct: 729 EIPKSVPSPSLPPAGTPPGTKKVDGISHTSALAPVASSPKECPTEDSGASATASSKGTLT 788
Query: 63 RHRASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLP 111
S P+ SP+ P + + PD P SP+ ++ LP
Sbjct: 789 YLADSPSPLGVSVSPQTKRPPTKKGSAGPDTPIGNLSSPVSPVEASFLP 837
Score = 27.7 bits (60), Expect = 4.8
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 80 GDPASAPAAPAPDQMRLPAGQPCSPL--HSTLLPRPMGLPHP 119
G P +PAP Q L A SP ST+ P+ +P P
Sbjct: 42 GPTLPPPCSPAPQQCPLSAANQASPFPSPSTIASTPLEVPFP 83
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 40.0 bits (92), Expect = 0.001
Identities = 39/125 (31%), Positives = 52/125 (41%), Gaps = 10/125 (8%)
Query: 30 TPLLLLEFASTPSLASPDRSEASMPPAHRHRSPRHRASSGPVANQDSPKDGDPASAPAAP 89
+PL ++ S P P+ S S PP SP AS +DSP P +PA+P
Sbjct: 654 SPLPVVSRLSPP----PEESPLSPPPEESPTSPPPEASRLSPPPEDSPTSPPPEDSPASP 709
Query: 90 APDQ--MRLPAGQ-PCSPL--HSTLLPRPMGLPHPIPWLQSEGLSQNHQLLAVWASGESV 144
P+ M LP + P PL L PR G PH P + LS + + E
Sbjct: 710 PPEDSLMSLPLEESPLLPLPEEPQLCPRSEG-PHLSPRPEEPHLSPRPEEPHLSPQAEEP 768
Query: 145 RRNPQ 149
+PQ
Sbjct: 769 HLSPQ 773
Score = 35.8 bits (81), Expect = 0.018
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Query: 40 TPSLASPD-------RSEASMPPAHRHRSPRHRA-----SSGPVANQDSPKDGDPASAPA 87
TP SPD R ++ P A H+ PR + +G +A+ G PA+ PA
Sbjct: 2441 TPRFQSPDPYSRPPSRPQSRDPFAPLHKPPRPQPPEVAFKAGSLAHTSLGAGGFPAALPA 2500
Query: 88 APAPD-QMRLPAGQPCSPLHSTLLPRPMGLPHPI 120
PA + ++P+GQP + + S +G P P+
Sbjct: 2501 GPAGELHAKVPSGQPPNFVRSPGTGAFVGTPSPM 2534
Score = 35.0 bits (79), Expect = 0.030
Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 13/91 (14%)
Query: 27 PPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRSPRHRASSGPVANQDSPKDGDPASAP 86
PP L F +P P+ S S PP SP +DSP P +P
Sbjct: 593 PPEASRLFPPFEESPLSPPPEESPLSPPPEASRLSP---------PPEDSPMSPPPEESP 643
Query: 87 AAPAPDQMRLPAGQPCSPLHSTLLPRPMGLP 117
+P P+ RL P+ S L P P P
Sbjct: 644 MSPPPEVSRLSP----LPVVSRLSPPPEESP 670
Score = 34.3 bits (77), Expect = 0.052
Identities = 22/72 (30%), Positives = 29/72 (40%)
Query: 46 PDRSEASMPPAHRHRSPRHRASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPL 105
P+ S S PP SP AS ++SP P +P +P P+ RL SP+
Sbjct: 576 PEESPMSPPPEESPMSPPPEASRLFPPFEESPLSPPPEESPLSPPPEASRLSPPPEDSPM 635
Query: 106 HSTLLPRPMGLP 117
PM P
Sbjct: 636 SPPPEESPMSPP 647
Score = 34.3 bits (77), Expect = 0.052
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Query: 27 PPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRSPRHRASSGPVANQDSPKDGDPASAP 86
PP L +P P+ S S PP SP S ++SP P +P
Sbjct: 620 PPEASRLSPPPEDSPMSPPPEESPMSPPPEVSRLSPLPVVSRLSPPPEESPLSPPPEESP 679
Query: 87 AAPAPDQMRL---PAGQPCSP 104
+P P+ RL P P SP
Sbjct: 680 TSPPPEASRLSPPPEDSPTSP 700
Score = 33.5 bits (75), Expect = 0.088
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 40 TPSLASPDRSEASMPPAHRHRSPRHRASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAG 99
+P+ P+ S S PP SP A ++SP P +P +P P+
Sbjct: 456 SPTSPPPEASRLSPPPEELPASPLPEALHLSRPLEESPLSPPPEESPLSPPPE------S 509
Query: 100 QPCSPLHSTLLPRPMGLPHPIPWLQS 125
P SPL + L P P P P L++
Sbjct: 510 SPFSPLEESPLSPPEESP-PSPALET 534
Score = 32.3 bits (72), Expect = 0.20
Identities = 28/87 (32%), Positives = 34/87 (39%), Gaps = 14/87 (16%)
Query: 39 STPSLASP-----DRSEASMPPAHRHRSPRHRASSGPVANQDSPKDGDPASAPAAPAPDQ 93
S P ASP + S S PP SP AS ++SP P +P +P P+
Sbjct: 537 SPPPEASPLSPPFEESPLSPPPEELPTSPPPEASRLSPPPEESPMSPPPEESPMSPPPEA 596
Query: 94 MRL-------PAGQPCSPLHSTLLPRP 113
RL P P P S L P P
Sbjct: 597 SRLFPPFEESPLSPP--PEESPLSPPP 621
Score = 31.2 bits (69), Expect = 0.44
Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 14/82 (17%)
Query: 41 PSLASPDRSEASMPPAHRHRSPRHRASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQ 100
P L P+ S S PP SP P A++ SP P PA+P P+ + L
Sbjct: 439 PLLPPPEESPLSPPPEESPTSPP------PEASRLSPP---PEELPASPLPEALHLSRPL 489
Query: 101 PCSPL-----HSTLLPRPMGLP 117
SPL S L P P P
Sbjct: 490 EESPLSPPPEESPLSPPPESSP 511
Score = 30.4 bits (67), Expect = 0.75
Identities = 27/97 (27%), Positives = 33/97 (34%), Gaps = 4/97 (4%)
Query: 21 SSLGWKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRSPRHRASSGPVANQDSPKDG 80
S L P +P LE S SP P SP AS ++SP
Sbjct: 501 SPLSPPPESSPFSPLE----ESPLSPPEESPPSPALETPLSPPPEASPLSPPFEESPLSP 556
Query: 81 DPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLP 117
P P +P P+ RL SP+ PM P
Sbjct: 557 PPEELPTSPPPEASRLSPPPEESPMSPPPEESPMSPP 593
Score = 29.3 bits (64), Expect = 1.7
Identities = 33/132 (25%), Positives = 46/132 (34%), Gaps = 26/132 (19%)
Query: 8 PGADVQLPEAMGASSLGWKPPGTPLLLLEFASTPSLAS----------PDRSEASMPPAH 57
PG ++ E A +L PP P + + T A P S ++PP
Sbjct: 2343 PGLGLRPQEPPPAQALAPSPPSHPDIFRPGSYTDPYAQPPLTPRPQPPPPESCCALPPRS 2402
Query: 58 RHRSPRHRASSGP--VANQDSPKDGDPASA---------PAAPAPDQMRLPAGQPCS--- 103
P R + P ++ SP P SA P +PD P +P S
Sbjct: 2403 LPSDPFSRVPASPQSQSSSQSPLTPRPLSAEAFCPSPVTPRFQSPDPYSRPPSRPQSRDP 2462
Query: 104 --PLHSTLLPRP 113
PLH P+P
Sbjct: 2463 FAPLHKPPRPQP 2474
Score = 28.5 bits (62), Expect = 2.8
Identities = 28/98 (28%), Positives = 37/98 (37%), Gaps = 11/98 (11%)
Query: 27 PPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRSPRHRASSGPVANQDSPKDGDPASAP 86
PP L+ L +P L P+ + H SPR P SP+ +P +P
Sbjct: 710 PPEDSLMSLPLEESPLLPLPEEPQLCPRSEGPHLSPR------PEEPHLSPRPEEPHLSP 763
Query: 87 AAPAPDQMRLPAGQPC---SPLHSTLLPRPMGLPHPIP 121
A P P +PC P L P+ G PH P
Sbjct: 764 QAEEPHLSPQPE-EPCLCAVPEEPHLSPQAEG-PHLSP 799
Score = 28.5 bits (62), Expect = 2.8
Identities = 33/119 (27%), Positives = 41/119 (34%), Gaps = 13/119 (10%)
Query: 6 PIPGADVQLPEAMGASSLG--------WKPPGTPLLLLEFASTPSLASPDRSEASMPPAH 57
P P +LP GA S G PP +P + PS +S +EA +PP H
Sbjct: 4281 PRPQGPPRLPAPPGALSTGPVLGPVHPTPPPSSPQEPKRPSQLPSPSSQLPTEAQLPPTH 4340
Query: 58 RHRSPRHRASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGL 116
P GP + P PA+A A L P L T P L
Sbjct: 4341 ----PGTPKPQGPTL-EPPPGRVSPAAAQLADTLFSKGLGPWDPPDNLAETQKPEQSSL 4394
>gi|33946327 nucleoporin 214kDa [Homo sapiens]
Length = 2090
Score = 39.3 bits (90), Expect = 0.002
Identities = 40/126 (31%), Positives = 55/126 (43%), Gaps = 20/126 (15%)
Query: 4 ITPIPGADVQLPEAMGAS--SLGWKPPGTPLLLLEFASTPSLASPDRS-EASMPPA---- 56
+ P P A P A S S G+KP LE PS+++P+ + + S PP+
Sbjct: 530 LAPTPAASPVAPSAASFSFGSSGFKPT------LESTPVPSVSAPNIAMKPSFPPSTSAV 583
Query: 57 --HRHRSPRHRASSGPVANQDSPKDGDP---ASAPAAPAPDQMRLPAGQPCS--PLHSTL 109
+ A+S PV++ S P AS PAA P P P S PL S++
Sbjct: 584 KVNLSEKFTAAATSTPVSSSQSAPPMSPFSSASKPAASGPLSHPTPLSAPPSSVPLKSSV 643
Query: 110 LPRPMG 115
LP P G
Sbjct: 644 LPSPSG 649
Score = 27.3 bits (59), Expect = 6.3
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 21 SSLGWKPPGTPLLLLEFASTPSLAS-PDRSEASMPPAHRHRSPRHRASSGPVANQDSPKD 79
S+ G T L+ L +TP+ PD ++PPA P A + + P
Sbjct: 1549 SNSGTAASSTSLVALSAEATPATTGVPDARTEAVPPASSFSVPGQTAVTAAAISSAGPVA 1608
Query: 80 GDPASAPAAPAPDQMRLP 97
+ +S P A + + P
Sbjct: 1609 VETSSTPIASSTTSIVAP 1626
>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 39.3 bits (90), Expect = 0.002
Identities = 36/103 (34%), Positives = 43/103 (41%), Gaps = 13/103 (12%)
Query: 6 PIPGADVQLPEAMGASSLGWKP---PGTPLLLLEFASTPSLASPDRSEASMPPAHRHRSP 62
P PG + E G S L P P P LLLE PS+A P PP SP
Sbjct: 146 PAPGPPQDISEPPGGSPLPSPPSTAPPPPPLLLEPPPPPSMAPPP------PPVLEALSP 199
Query: 63 RHRASSGPVANQDSPKDGDPASAPAA-PAPDQMRLPAGQPCSP 104
H SS + +P D P + P A AP +PA P +P
Sbjct: 200 PHTLSSPSI---PTPPDFIPPAPPLAFLAPPPPPVPAPAPPAP 239
Score = 27.7 bits (60), Expect = 4.8
Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 16/83 (19%)
Query: 69 GPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLPHPIPWLQSEGL 128
GP + P G P +P + AP P PL P P P P P L E L
Sbjct: 149 GPPQDISEPPGGSPLPSPPSTAP---------PPPPLLLEPPPPPSMAPPPPPVL--EAL 197
Query: 129 SQNHQLLAVWASGESVRRNPQFL 151
S H L S S+ P F+
Sbjct: 198 SPPHTL-----SSPSIPTPPDFI 215
Score = 26.9 bits (58), Expect = 8.3
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 15/70 (21%)
Query: 6 PIPGADVQLPEAMGASSLGWKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRSPRHR 65
P+P A LP A A+ PP F TP +SP PP SP +
Sbjct: 409 PLPPAAPPLPCAQKAAH----PPAG------FTKTPKSSSPALKPKPNPP-----SPENT 453
Query: 66 ASSGPVANQD 75
ASS PV +D
Sbjct: 454 ASSAPVDWRD 463
>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 39.3 bits (90), Expect = 0.002
Identities = 36/103 (34%), Positives = 43/103 (41%), Gaps = 13/103 (12%)
Query: 6 PIPGADVQLPEAMGASSLGWKP---PGTPLLLLEFASTPSLASPDRSEASMPPAHRHRSP 62
P PG + E G S L P P P LLLE PS+A P PP SP
Sbjct: 146 PAPGPPQDISEPPGGSPLPSPPSTAPPPPPLLLEPPPPPSMAPPP------PPVLEALSP 199
Query: 63 RHRASSGPVANQDSPKDGDPASAPAA-PAPDQMRLPAGQPCSP 104
H SS + +P D P + P A AP +PA P +P
Sbjct: 200 PHTLSSPSI---PTPPDFIPPAPPLAFLAPPPPPVPAPAPPAP 239
Score = 27.7 bits (60), Expect = 4.8
Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 16/83 (19%)
Query: 69 GPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLPHPIPWLQSEGL 128
GP + P G P +P + AP P PL P P P P P L E L
Sbjct: 149 GPPQDISEPPGGSPLPSPPSTAP---------PPPPLLLEPPPPPSMAPPPPPVL--EAL 197
Query: 129 SQNHQLLAVWASGESVRRNPQFL 151
S H L S S+ P F+
Sbjct: 198 SPPHTL-----SSPSIPTPPDFI 215
Score = 26.9 bits (58), Expect = 8.3
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 15/70 (21%)
Query: 6 PIPGADVQLPEAMGASSLGWKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRSPRHR 65
P+P A LP A A+ PP F TP +SP PP SP +
Sbjct: 409 PLPPAAPPLPCAQKAAH----PPAG------FTKTPKSSSPALKPKPNPP-----SPENT 453
Query: 66 ASSGPVANQD 75
ASS PV +D
Sbjct: 454 ASSAPVDWRD 463
>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
sapiens]
Length = 1188
Score = 39.3 bits (90), Expect = 0.002
Identities = 36/103 (34%), Positives = 43/103 (41%), Gaps = 13/103 (12%)
Query: 6 PIPGADVQLPEAMGASSLGWKP---PGTPLLLLEFASTPSLASPDRSEASMPPAHRHRSP 62
P PG + E G S L P P P LLLE PS+A P PP SP
Sbjct: 146 PAPGPPQDISEPPGGSPLPSPPSTAPPPPPLLLEPPPPPSMAPPP------PPVLEALSP 199
Query: 63 RHRASSGPVANQDSPKDGDPASAPAA-PAPDQMRLPAGQPCSP 104
H SS + +P D P + P A AP +PA P +P
Sbjct: 200 PHTLSSPSI---PTPPDFIPPAPPLAFLAPPPPPVPAPAPPAP 239
Score = 27.7 bits (60), Expect = 4.8
Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 16/83 (19%)
Query: 69 GPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLPHPIPWLQSEGL 128
GP + P G P +P + AP P PL P P P P P L E L
Sbjct: 149 GPPQDISEPPGGSPLPSPPSTAP---------PPPPLLLEPPPPPSMAPPPPPVL--EAL 197
Query: 129 SQNHQLLAVWASGESVRRNPQFL 151
S H L S S+ P F+
Sbjct: 198 SPPHTL-----SSPSIPTPPDFI 215
Score = 26.9 bits (58), Expect = 8.3
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 15/70 (21%)
Query: 6 PIPGADVQLPEAMGASSLGWKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRSPRHR 65
P+P A LP A A+ PP F TP +SP PP SP +
Sbjct: 409 PLPPAAPPLPCAQKAAH----PPAG------FTKTPKSSSPALKPKPNPP-----SPENT 453
Query: 66 ASSGPVANQD 75
ASS PV +D
Sbjct: 454 ASSAPVDWRD 463
>gi|122937440 multiple EGF-like-domains 9 [Homo sapiens]
Length = 639
Score = 39.3 bits (90), Expect = 0.002
Identities = 33/115 (28%), Positives = 45/115 (39%), Gaps = 5/115 (4%)
Query: 8 PGADVQLPEAMGASSLGWKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRSPRHRAS 67
P A V P + A+S P TPL S+ + +P + PPA S +A
Sbjct: 75 PRATVHRP--LAATSPAQSPETTPLWATAGPSSTTFQAPLGPSPTTPPAAERTSTTSQAP 132
Query: 68 SGPVANQDSPKDGDPASAPAA---PAPDQMRLPAGQPCSPLHSTLLPRPMGLPHP 119
+ P S G + P A PAP R P S +S++LP P P
Sbjct: 133 TRPAPTTLSTTTGPAPTTPVATTVPAPTTPRTPTPDLPSSSNSSVLPTPPATEAP 187
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 38.5 bits (88), Expect = 0.003
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 17/155 (10%)
Query: 27 PPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRSP---RHRASSGPVANQDSPKDGDPA 83
PP P + +TP A P + +A + H+ S +++A P A Q S G P
Sbjct: 935 PPPPPPRTFQMVTTPFPALP-QPKALLERFHQVPSGIILQNKAGGAPAAPQTSTSLG-PL 992
Query: 84 SAPAAPAPDQMRLPAGQPCSPLHSTLLPRPM---GLPHPIPWLQSEGLSQNHQLLAVWAS 140
++PAA + P+G P +P H+ P PM GLP +P +++ + N L V +
Sbjct: 993 TSPAASVLVSGQAPSGTPTAPSHAP-APAPMAATGLPPLLP-AENKAFASNLPTLNVAKA 1050
Query: 141 GESVRRNPQFLL-------IKNPSTVLTWKLQCDL 168
S P L +K P T+ K C L
Sbjct: 1051 ASSGPGKPSGLQYESKLSGLKKPPTLQPSKEACFL 1085
Score = 29.3 bits (64), Expect = 1.7
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 45 SPDRSEASMPPAHRHRSPRHRASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSP 104
+PD S+AS PA + + GP ++ P +P P+P R P+ P P
Sbjct: 749 APD-SQASPAPAPQIPAAAPLKGPGPSSSPSLPHQAPLGDSPHLPSPHPTRPPSRPPSRP 807
Query: 105 LHSTLLPRPMGLPHPIP 121
+ P L HP P
Sbjct: 808 QSVSRPPSEPPL-HPCP 823
>gi|133922582 zinc finger protein 358 [Homo sapiens]
Length = 568
Score = 38.5 bits (88), Expect = 0.003
Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 46 PDRSEASMPPAHRHRSPRHRASSGPVANQDS------PKDGDPASAP---AAPAPDQMRL 96
PD S +P + SP SS P A D+ D DP +P P+PD +
Sbjct: 472 PDPSSKPLPGSRSTPSPTPVESSDPKAGHDAGPDLVPSPDLDPVPSPDPDPVPSPDPNPV 531
Query: 97 PAGQPCSPLHSTLLPR-PMGLPHPIPWLQSEG 127
PCSP T+ P P G W+Q +G
Sbjct: 532 SCPDPCSPTRGTVSPALPTG--ESPEWVQEQG 561
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 38.1 bits (87), Expect = 0.004
Identities = 37/110 (33%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 12 VQLPEAMGASSLGWKPPGTPLLLLEFASTPSLASPD----RSEASMPPAHRHRS---PRH 64
+Q+P ++ + SL + P +PL L +T SL SP S +M P S P
Sbjct: 389 IQVPHSLTSPSL--QAPPSPLALSSLQATTSLGSPTLQATHSFLTMSPRQTQASLTSPSR 446
Query: 65 RASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPM 114
AS+ P DSP P S PA+P PA SPL S L P+
Sbjct: 447 PASTPP----DSPPLQAPLSLPASPPLQTSLSPA---VSPLSSPLTIHPL 489
Score = 37.0 bits (84), Expect = 0.008
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 19/125 (15%)
Query: 5 TPIPGAD--VQLPEAMGASSLGWKPPGTPLLLLEFASTPSLASPD-------RSEASMPP 55
TP P A + LP S PP +PL +TPS +P+ ++ S PP
Sbjct: 616 TPPPQAPPXLALPPLQAPPSPPASPPLSPL------ATPSPQAPNALAVHLLQAPFSPPP 669
Query: 56 AHRHRSPRHRASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMG 115
+ ++P +S PV SP P+ AP + A +++P P SP S P
Sbjct: 670 SPPVQAPFSPPASPPV----SPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQ 725
Query: 116 LPHPI 120
P P+
Sbjct: 726 APPPL 730
Score = 36.2 bits (82), Expect = 0.014
Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 9/120 (7%)
Query: 4 ITPIPGADVQLPEAMGASSLG--WKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRS 61
++P+ Q P A+ L + PP +P + F+ ASP S ++ PP+ S
Sbjct: 642 LSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPP---ASPPVSPSATPPSQAPPS 698
Query: 62 ----PRHRASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLP 117
P S P + SP P AP A +++P P SP S P +P
Sbjct: 699 LAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRVP 758
Score = 34.3 bits (77), Expect = 0.052
Identities = 35/130 (26%), Positives = 47/130 (36%), Gaps = 22/130 (16%)
Query: 5 TPIPGADVQLPEAMGASSLGWKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRSPRH 64
+P P VQ P + AS PP +P + PSLA+P PPA SP
Sbjct: 666 SPPPSPPVQAPFSPPAS-----PPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSA 720
Query: 65 RA--------SSGPVANQDSPKDGDPASAPAAPAP--------DQMRLPAGQPCS-PLHS 107
++ P+ SP P S A P P +++P P S P+
Sbjct: 721 TPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSP 780
Query: 108 TLLPRPMGLP 117
P P P
Sbjct: 781 LAKPPPQAPP 790
Score = 31.6 bits (70), Expect = 0.33
Identities = 37/129 (28%), Positives = 45/129 (34%), Gaps = 18/129 (13%)
Query: 5 TPIPGADVQL--PEAMGASSLGWKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRSP 62
TP P A L P G S PP +PL + P LA P PPA SP
Sbjct: 589 TPPPQAPPALASPPLQGLPS----PPLSPLATPPPQAPPXLALPPLQAPPSPPASPPLSP 644
Query: 63 RHRASSGPVANQD----------SPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPR 112
A+ P A SP P AP +P P+ P S +L
Sbjct: 645 --LATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAP 702
Query: 113 PMGLPHPIP 121
P+ +P P
Sbjct: 703 PLQVPPSPP 711
Score = 31.6 bits (70), Expect = 0.33
Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 18/108 (16%)
Query: 15 PEAMGASSLGWKPPGTPLLLLEFASTPSLASPDRSEASMPPAH-RHRSPRHRASSGPVAN 73
P ++ S L PP P P+LA+P PPA ++P ++S P+
Sbjct: 773 PASLPMSPLAKPPPQAP---------PALATPPLQALPSPPASFPGQAPFSPSASLPM-- 821
Query: 74 QDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLPHPIP 121
SP P AP A +++P P SP L P P P P
Sbjct: 822 --SPLATPPPQAPPVLAAPLLQVPPSPPASP----TLQAPRRPPTPGP 863
Score = 28.1 bits (61), Expect = 3.7
Identities = 24/94 (25%), Positives = 31/94 (32%), Gaps = 2/94 (2%)
Query: 28 PGTPLLLLEFASTPSLASPDRSEASMPPAHRHRSPRHRASSGPVANQDSPKDGDPASAPA 87
P L + PSLA P AS P H + P+ SP P P+
Sbjct: 526 PPASLTTPPLENLPSLAPPPLQTASAPLTTPHLETPPCPAPCPLQAPPSPLTTPPPETPS 585
Query: 88 APAPDQMRLPAGQPCSPLHSTLLP--RPMGLPHP 119
+ A + P PL P P+ P P
Sbjct: 586 SIATPPPQAPPALASPPLQGLPSPPLSPLATPPP 619
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 37.7 bits (86), Expect = 0.005
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 38 ASTPSLASPDRSEASMPPAHRHRSPRHRASSGPVANQDSPKDGDPASAPAAPAPDQMRLP 97
+STP SP RS + P SPR R+ SG SP P+ + P + R
Sbjct: 901 SSTPPRQSPSRSSSPQPKVKAIISPRQRSHSG----SSSP---SPSRVTSRTTPRRSR-- 951
Query: 98 AGQPCSPLHSTLLPR 112
+ PCS + S LLPR
Sbjct: 952 SVSPCSNVESRLLPR 966
Score = 26.9 bits (58), Expect = 8.3
Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 6/104 (5%)
Query: 20 ASSLGWKPPGTPLLLLEFASTPSLASPDRSEASMPP----AHRHRSPRHRASSGPVANQD 75
+ S G P P + L+ +P+ A + PP A R R +SS ++
Sbjct: 2561 SDSEGSSLPVQPEVALKRVPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSS 2620
Query: 76 SPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLPHP 119
S +S+ ++ + + SP S P P LP P
Sbjct: 2621 SSSSSSSSSSSSSSSSSSSSSSSSSSSSP--SPAKPGPQALPKP 2662
>gi|239757729 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 37.0 bits (84), Expect = 0.008
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 9/88 (10%)
Query: 40 TPSLASPDRSEASMPPAHRHRSPRHRASSGPVANQDSPKDGDPASAPAAPA------PDQ 93
TP PD + PP + + +SGP + SP+D + P +P P Q
Sbjct: 31 TPERDRPDWPRSFKPPLSPEKGTK---ASGPQTSAPSPRDPGLHTPPCSPRRGRRGRPTQ 87
Query: 94 MRLPAGQPCSPLHSTLLPRPMGLPHPIP 121
PA PC+ T P P G P P
Sbjct: 88 EVCPAPGPCAQPAGTCPPPPTGEKQPRP 115
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 37.0 bits (84), Expect = 0.008
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 19/125 (15%)
Query: 5 TPIPGAD--VQLPEAMGASSLGWKPPGTPLLLLEFASTPSLASPD-------RSEASMPP 55
TP P A + LP S PP +PL +TPS +P+ ++ S PP
Sbjct: 391 TPPPQAPPALALPPLQAPPSPPASPPLSPL------ATPSPQAPNALAVHLLQAPFSPPP 444
Query: 56 AHRHRSPRHRASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMG 115
+ ++P +S PV SP P+ AP + A +++P P SP S P
Sbjct: 445 SPPVQAPFSPPASPPV----SPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQ 500
Query: 116 LPHPI 120
P P+
Sbjct: 501 APPPL 505
Score = 31.2 bits (69), Expect = 0.44
Identities = 29/105 (27%), Positives = 38/105 (36%), Gaps = 12/105 (11%)
Query: 27 PPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRSPRHRASSGPVANQD----------S 76
PP +PL + P+LA P PPA SP A+ P A S
Sbjct: 384 PPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSP--LATPSPQAPNALAVHLLQAPFS 441
Query: 77 PKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLPHPIP 121
P P AP +P P+ P S +L P+ +P P
Sbjct: 442 PPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPP 486
Score = 31.2 bits (69), Expect = 0.44
Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 10/122 (8%)
Query: 4 ITPIPGADVQLPEAMGASSLG--WKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRS 61
++P+ Q P A+ L + PP +P + F+ ASP S ++ PP+ S
Sbjct: 417 LSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPP---ASPPVSPSATPPSQAPPS 473
Query: 62 ----PRHRASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLP 117
P S P + SP P AP A ++L P +P + P LP
Sbjct: 474 LAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAP-PALATPPLQALP 532
Query: 118 HP 119
P
Sbjct: 533 SP 534
Score = 29.6 bits (65), Expect = 1.3
Identities = 35/118 (29%), Positives = 45/118 (38%), Gaps = 20/118 (16%)
Query: 5 TPIPGADVQLPEAMGASSLGWKPPGTPLLLLEFASTPSLASPDRSEASMPPAH-RHRSPR 63
TP P A P A L PP P P+LA+P PPA ++P
Sbjct: 496 TPPPQAPP--PLAAPPLQLAKPPPQAP---------PALATPPLQALPSPPASFPGQAPF 544
Query: 64 HRASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLPHPIP 121
++S P+ SP P AP A +++P P SP L P P P P
Sbjct: 545 SPSASLPM----SPLATPPPQAPPVLAAPLLQVPPSPPASP----TLQAPRRPPTPGP 594
>gi|239752222 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 37.0 bits (84), Expect = 0.008
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 9/88 (10%)
Query: 40 TPSLASPDRSEASMPPAHRHRSPRHRASSGPVANQDSPKDGDPASAPAAPA------PDQ 93
TP PD + PP + + +SGP + SP+D + P +P P Q
Sbjct: 31 TPERDRPDWPRSFKPPLSPEKGTK---ASGPQTSAPSPRDPGLHTPPCSPRRGRRGRPTQ 87
Query: 94 MRLPAGQPCSPLHSTLLPRPMGLPHPIP 121
PA PC+ T P P G P P
Sbjct: 88 EVCPAPGPCAQPAGTCPPPPTGEKQPRP 115
>gi|239746743 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 37.0 bits (84), Expect = 0.008
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 9/88 (10%)
Query: 40 TPSLASPDRSEASMPPAHRHRSPRHRASSGPVANQDSPKDGDPASAPAAPA------PDQ 93
TP PD + PP + + +SGP + SP+D + P +P P Q
Sbjct: 31 TPERDRPDWPRSFKPPLSPEKGTK---ASGPQTSAPSPRDPGLHTPPCSPRRGRRGRPTQ 87
Query: 94 MRLPAGQPCSPLHSTLLPRPMGLPHPIP 121
PA PC+ T P P G P P
Sbjct: 88 EVCPAPGPCAQPAGTCPPPPTGEKQPRP 115
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 37.0 bits (84), Expect = 0.008
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 19/125 (15%)
Query: 5 TPIPGAD--VQLPEAMGASSLGWKPPGTPLLLLEFASTPSLASPD-------RSEASMPP 55
TP P A + LP S PP +PL +TPS +P+ ++ S PP
Sbjct: 352 TPPPQAPPALALPPLQAPPSPPASPPLSPL------ATPSPQAPNALAVHLLQAPFSPPP 405
Query: 56 AHRHRSPRHRASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMG 115
+ ++P +S PV SP P+ AP + A +++P P SP S P
Sbjct: 406 SPPVQAPFSPPASPPV----SPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQ 461
Query: 116 LPHPI 120
P P+
Sbjct: 462 APPPL 466
Score = 31.2 bits (69), Expect = 0.44
Identities = 29/105 (27%), Positives = 38/105 (36%), Gaps = 12/105 (11%)
Query: 27 PPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRSPRHRASSGPVANQD----------S 76
PP +PL + P+LA P PPA SP A+ P A S
Sbjct: 345 PPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSP--LATPSPQAPNALAVHLLQAPFS 402
Query: 77 PKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLPHPIP 121
P P AP +P P+ P S +L P+ +P P
Sbjct: 403 PPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPP 447
Score = 31.2 bits (69), Expect = 0.44
Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 10/122 (8%)
Query: 4 ITPIPGADVQLPEAMGASSLG--WKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRS 61
++P+ Q P A+ L + PP +P + F+ ASP S ++ PP+ S
Sbjct: 378 LSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPP---ASPPVSPSATPPSQAPPS 434
Query: 62 ----PRHRASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLP 117
P S P + SP P AP A ++L P +P + P LP
Sbjct: 435 LAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAP-PALATPPLQALP 493
Query: 118 HP 119
P
Sbjct: 494 SP 495
Score = 29.6 bits (65), Expect = 1.3
Identities = 35/118 (29%), Positives = 45/118 (38%), Gaps = 20/118 (16%)
Query: 5 TPIPGADVQLPEAMGASSLGWKPPGTPLLLLEFASTPSLASPDRSEASMPPAH-RHRSPR 63
TP P A P A L PP P P+LA+P PPA ++P
Sbjct: 457 TPPPQAPP--PLAAPPLQLAKPPPQAP---------PALATPPLQALPSPPASFPGQAPF 505
Query: 64 HRASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLPHPIP 121
++S P+ SP P AP A +++P P SP L P P P P
Sbjct: 506 SPSASLPM----SPLATPPPQAPPVLAAPLLQVPPSPPASP----TLQAPRRPPTPGP 555
>gi|169213703 PREDICTED: hypothetical protein [Homo sapiens]
Length = 319
Score = 36.6 bits (83), Expect = 0.010
Identities = 31/102 (30%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
Query: 26 KPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRSPRHRASSGPVANQDSPKDGDPASA 85
+PP TP LL A + L SP R P +PR A S DP +
Sbjct: 92 RPPSTPHLLSASALSAQLDSPARPHPRCYPPFALSAPRPPALGASATAFRS--SSDPPAR 149
Query: 86 P-----AAPAPDQMRLPAGQPCSPLHSTLLPRPMGLPHPIPW 122
P A+ +P Q+RLP+ + LP P P +PW
Sbjct: 150 PRLFRRASASPAQLRLPSRLASALSAQLRLPHPSS-PGVLPW 190
>gi|41350201 epsin 1 isoform c [Homo sapiens]
Length = 550
Score = 35.8 bits (81), Expect = 0.018
Identities = 35/124 (28%), Positives = 48/124 (38%), Gaps = 5/124 (4%)
Query: 9 GADVQLPEAMGASS--LGWKPPGTPLLLLEFASTPSLA---SPDRSEASMPPAHRHRSPR 63
G D++L A+ S G K + + L + + P+ A P A M A +P
Sbjct: 208 GDDLRLQMAIEESKRETGGKEESSLMDLADVFTAPAPAPTTDPWGGPAPMAAAVPTAAPT 267
Query: 64 HRASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLPHPIPWL 123
GP + G PA PA+ P + PAG P T P P P PW
Sbjct: 268 SDPWGGPPVPPAADPWGGPAPTPASGDPWRPAAPAGPSVDPWGGTPAPAAGEGPTPDPWG 327
Query: 124 QSEG 127
S+G
Sbjct: 328 SSDG 331
>gi|194248095 epsin 1 isoform b [Homo sapiens]
Length = 576
Score = 35.8 bits (81), Expect = 0.018
Identities = 35/124 (28%), Positives = 48/124 (38%), Gaps = 5/124 (4%)
Query: 9 GADVQLPEAMGASS--LGWKPPGTPLLLLEFASTPSLA---SPDRSEASMPPAHRHRSPR 63
G D++L A+ S G K + + L + + P+ A P A M A +P
Sbjct: 233 GDDLRLQMAIEESKRETGGKEESSLMDLADVFTAPAPAPTTDPWGGPAPMAAAVPTAAPT 292
Query: 64 HRASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLPHPIPWL 123
GP + G PA PA+ P + PAG P T P P P PW
Sbjct: 293 SDPWGGPPVPPAADPWGGPAPTPASGDPWRPAAPAGPSVDPWGGTPAPAAGEGPTPDPWG 352
Query: 124 QSEG 127
S+G
Sbjct: 353 SSDG 356
>gi|194272148 epsin 1 isoform a [Homo sapiens]
Length = 662
Score = 35.8 bits (81), Expect = 0.018
Identities = 35/124 (28%), Positives = 48/124 (38%), Gaps = 5/124 (4%)
Query: 9 GADVQLPEAMGASS--LGWKPPGTPLLLLEFASTPSLA---SPDRSEASMPPAHRHRSPR 63
G D++L A+ S G K + + L + + P+ A P A M A +P
Sbjct: 319 GDDLRLQMAIEESKRETGGKEESSLMDLADVFTAPAPAPTTDPWGGPAPMAAAVPTAAPT 378
Query: 64 HRASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLPHPIPWL 123
GP + G PA PA+ P + PAG P T P P P PW
Sbjct: 379 SDPWGGPPVPPAADPWGGPAPTPASGDPWRPAAPAGPSVDPWGGTPAPAAGEGPTPDPWG 438
Query: 124 QSEG 127
S+G
Sbjct: 439 SSDG 442
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 35.8 bits (81), Expect = 0.018
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 66 ASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLPHPIPWLQS 125
A+ GP A SP G+ A + P P+ LPA +PL + +P P P P L+S
Sbjct: 932 ATPGPAAPLPSPTPGESPPASSLPQPEPSSLPAQGVPTPLAPSPAMQPPVPPCPGPGLES 991
Query: 126 EGLSQ 130
S+
Sbjct: 992 SAASR 996
Score = 33.9 bits (76), Expect = 0.067
Identities = 30/101 (29%), Positives = 38/101 (37%), Gaps = 4/101 (3%)
Query: 4 ITPIPGADVQLPEAMGASSLGWKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRSPR 63
+TP P ++ + PP P L S PS P E S P PR
Sbjct: 763 VTPTPARGTPRSQSFALRARRKGPPPPPPKRLSSVSGPSPEPPPLDE-SPGPKEGATGPR 821
Query: 64 HRASSGPVANQDSPKDGDPASA-PAAPAPDQMRLPAGQPCS 103
R S P + P G PA A PA+ ++ P G P S
Sbjct: 822 RRTLSEPAGPSEPP--GPPAPAGPASDTEEEEPGPEGTPPS 860
>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
Length = 1202
Score = 35.8 bits (81), Expect = 0.018
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 66 ASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLPHPIPWLQS 125
A+ GP A SP G+ A + P P+ LPA +PL + +P P P P L+S
Sbjct: 1014 ATPGPAAPLPSPTPGESPPASSLPQPEPSSLPAQGVPTPLAPSPAMQPPVPPCPGPGLES 1073
Query: 126 EGLSQ 130
S+
Sbjct: 1074 SAASR 1078
Score = 33.9 bits (76), Expect = 0.067
Identities = 30/101 (29%), Positives = 38/101 (37%), Gaps = 4/101 (3%)
Query: 4 ITPIPGADVQLPEAMGASSLGWKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRSPR 63
+TP P ++ + PP P L S PS P E S P PR
Sbjct: 845 VTPTPARGTPRSQSFALRARRKGPPPPPPKRLSSVSGPSPEPPPLDE-SPGPKEGATGPR 903
Query: 64 HRASSGPVANQDSPKDGDPASA-PAAPAPDQMRLPAGQPCS 103
R S P + P G PA A PA+ ++ P G P S
Sbjct: 904 RRTLSEPAGPSEPP--GPPAPAGPASDTEEEEPGPEGTPPS 942
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 35.8 bits (81), Expect = 0.018
Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 3/104 (2%)
Query: 46 PDRSEASMPPAHRHRSPRHRASSGPVANQDSPKDGDPASAPAAPAPDQMRLPAGQPCSPL 105
P R S PP R RSP R S P+ + SP P A+P P R + P
Sbjct: 577 PRRRTPSPPP--RRRSPSPRRYSPPIQRRYSPSP-PPKRRTASPPPPPKRRASPSPPPKR 633
Query: 106 HSTLLPRPMGLPHPIPWLQSEGLSQNHQLLAVWASGESVRRNPQ 149
+ P P P+ +S LS H+ + + R+PQ
Sbjct: 634 RVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQ 677
Score = 28.1 bits (61), Expect = 3.7
Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 35 LEFASTPSLASPDRSEASMPPAHRHRSPRHRASSGPVANQDSPKDGDPASAPAAPAPDQM 94
L +S+ S +S RS PP PR P A+ P+ S PA P P
Sbjct: 355 LSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSAS--PPRRRHRPSPPATPPPKTR 412
Query: 95 RLPAGQ 100
P Q
Sbjct: 413 HSPTPQ 418
>gi|22749387 zinc finger, CCHC domain containing 5 [Homo sapiens]
Length = 475
Score = 35.8 bits (81), Expect = 0.018
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 23 LGWKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRSPRHRASSGPVANQDS-----P 77
L W+PP L A+ SLA P E+ PP H P GP QD+ P
Sbjct: 95 LPWEPPAAWELQEAPAAPESLAPPATRESQKPPM-AHEIPTVLEGQGPANTQDATIAQEP 153
Query: 78 KDGDPASAPAAPAPDQ 93
K+ +P P P +
Sbjct: 154 KNSEPQDPPNIEKPQE 169
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 35.4 bits (80), Expect = 0.023
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 19/105 (18%)
Query: 15 PEAMGASSLGWKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRSPRHRASSGPVANQ 74
P A+G+ L +PP P P+ ASP + PP A + P A +
Sbjct: 749 PLALGSPRLVRRPPPGP--------APAAASPGPPPPASPPG---------APASPRAPR 791
Query: 75 DSPKDGDPASAPAAPAPDQMRLPAGQPCSPLHSTLLPRPMGLPHP 119
SP G PA+ A PA RL + PL ++ P G P P
Sbjct: 792 TSPYGGLPAAPLAGPALPARRL--SRASRPLSASQPSLPHGAPGP 834
Score = 32.0 bits (71), Expect = 0.26
Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 8 PGADVQLPEAMGASSLGWKP------PGTPLLLLEFASTPSLASPDRSEASMPPAHRHRS 61
PGA P A S G P P P L AS P AS + S+P H +
Sbjct: 781 PGAPAS-PRAPRTSPYGGLPAAPLAGPALPARRLSRASRPLSAS----QPSLP----HGA 831
Query: 62 PRHRASSGPVANQDSPKDGDPASAPAAPAPDQ 93
P AS+ P ++ PA+ AAP+PD+
Sbjct: 832 PGPAASTRPASSSTPRLGPTPAARAAAPSPDR 863
Score = 28.9 bits (63), Expect = 2.2
Identities = 27/79 (34%), Positives = 31/79 (39%), Gaps = 18/79 (22%)
Query: 61 SPR--HRASSGPVANQDSPKDGDPAS---APAAPAPDQMRLPAGQPCSPLHSTLLP---- 111
SPR R GP SP PAS APA+P + G P +PL LP
Sbjct: 754 SPRLVRRPPPGPAPAAASPGPPPPASPPGAPASPRAPRTSPYGGLPAAPLAGPALPARRL 813
Query: 112 ----RPM-----GLPHPIP 121
RP+ LPH P
Sbjct: 814 SRASRPLSASQPSLPHGAP 832
>gi|224028289 tetratricopeptide repeat domain 28 [Homo sapiens]
Length = 2481
Score = 35.0 bits (79), Expect = 0.030
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 15/94 (15%)
Query: 6 PIPGADVQLPEAMGASSLGWKPPGTPLLLLEFASTPSLASPDRSEASMPPAHRHRSPRHR 65
P PG D Q + PL L++ S+P A +S +M P+ H+SP
Sbjct: 2270 PSPGCDSQTSQL-----------DQPLFKLKYPSSPYSAHISKSPRNMSPSSGHQSP--- 2315
Query: 66 ASSGPVANQDSPKDGDPASAPA-APAPDQMRLPA 98
A S P G S+PA AP D++++ A
Sbjct: 2316 AGSAPSPALSYSSAGSARSSPADAPDIDKLKMAA 2349
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,079,817
Number of Sequences: 37866
Number of extensions: 569841
Number of successful extensions: 3860
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 509
Number of HSP's that attempted gapping in prelim test: 3216
Number of HSP's gapped (non-prelim): 1088
length of query: 168
length of database: 18,247,518
effective HSP length: 95
effective length of query: 73
effective length of database: 14,650,248
effective search space: 1069468104
effective search space used: 1069468104
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.