ZCCHC5 15609

Name: ZCCHC5	Sequence: fasta or formatted (475aa)		NCBI GI: 22749387
Description: zinc finger, CCHC domain containing 5		Referenced in: DNA Transposon and Retrovirus-related Sequences Zinc Finger Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 10.5 50 2 C cysteine 2.1 10 1 D aspartate 3.6 17 1 E glutamate 11.6 55 2 F phenylalanine 3.2 15 1 G glycine 4.0 19 1 H histidine 2.5 12 1 I isoleucine 4.0 19 1 K lysine 3.8 18 1 L leucine 10.3 49 3 M methionine 1.5 7 1 N asparagine 3.6 17 1 P proline 10.9 52 3 Q glutamine 9.5 45 1 R arginine 1.9 9 1 S serine 6.5 31 3 T threonine 3.6 17 1 V valine 2.9 14 2 W tryptophan 2.1 10 2 Y tyrosine 1.9 9 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 zinc finger, CCHC domain containing 5 PEG10 0.101 paternally expressed 10 isoform RF1 PEG10 0.099 paternally expressed 10 isoform RF1/2 ZCCHC16 0.070 zinc finger, CCHC domain containing 16 RGAG4 0.056 retrotransposon gag domain containing 4 RTL1 0.039 retrotransposon-like 1 LDOC1 0.031 leucine zipper, down-regulated in cancer 1 NEFH 0.031 neurofilament, heavy polypeptide 200kDa TTN 0.030 titin isoform N2-A KIAA1522 0.029 hypothetical protein LOC57648 RGAG1 0.028 retrotransposon gag domain containing 1 FAM127A 0.027 family with sequence similarity 127, member A [Homo... FAM127C 0.027 family with sequence similarity 127, member C [Homo... LOC100292719 0.027 PREDICTED: similar to Family with sequence similari... LOC100288229 0.027 PREDICTED: hypothetical protein XP_002343606 FAM127B 0.027 family with sequence similarity 127, member B isofo... LRRC37A3 0.026 leucine rich repeat containing 37, member A3 LOC100294335 0.026 PREDICTED: similar to c114 SLIT-like testicular pro... LOC100294335 0.026 PREDICTED: similar to c114 SLIT-like testicular pro... LRRC37A2 0.026 c114 SLIT-like testicular protein LRRC37A 0.026 leucine rich repeat containing 37A BRD4 0.025 bromodomain-containing protein 4 isoform long C1orf113 0.024 SH3 domain-containing protein C1orf113 isoform 1 [H... C1orf113 0.024 SH3 domain-containing protein C1orf113 isoform 2 [H... PRG4 0.024 proteoglycan 4 isoform D PRG4 0.024 proteoglycan 4 isoform C PRG4 0.024 proteoglycan 4 isoform B PRG4 0.024 proteoglycan 4 isoform A MLL2 0.024 myeloid/lymphoid or mixed-lineage leukemia 2 PELP1 0.024 proline, glutamic acid and leucine rich protein 1 [... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.