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Search of human proteins with 169201702
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169201702 PREDICTED: hypothetical protein [Homo sapiens]
(95 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169201702 PREDICTED: hypothetical protein [Homo sapiens] 196 3e-51
gi|113422095 PREDICTED: hypothetical protein [Homo sapiens] 196 3e-51
gi|134142824 forkhead box D2 [Homo sapiens] 34 0.022
gi|4557743 Mediterranean fever protein [Homo sapiens] 34 0.029
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 33 0.038
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 33 0.038
gi|110815800 WD repeat domain 32 [Homo sapiens] 33 0.049
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 33 0.049
gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo ... 33 0.049
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 33 0.049
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 33 0.049
gi|169217315 PREDICTED: hypothetical protein [Homo sapiens] 32 0.084
gi|113430659 PREDICTED: hypothetical protein [Homo sapiens] 32 0.084
gi|113430177 PREDICTED: hypothetical protein [Homo sapiens] 32 0.084
gi|113430175 PREDICTED: hypothetical protein [Homo sapiens] 32 0.084
gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens] 32 0.11
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 32 0.14
gi|21618325 forkhead box E1 [Homo sapiens] 32 0.14
gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens] 32 0.14
gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens] 32 0.14
gi|153792575 hypothetical protein LOC90120 [Homo sapiens] 32 0.14
gi|4758168 distal-less homeobox 2 [Homo sapiens] 31 0.19
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens] 31 0.19
gi|116089312 heparan sulfate (glucosamine) 3-O-sulfotransferase ... 31 0.19
gi|239753331 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|239747900 PREDICTED: hypothetical protein XP_002346471 [Homo ... 31 0.24
gi|239741792 PREDICTED: hypothetical protein XP_002342302 [Homo ... 31 0.24
gi|24307963 zinc finger, DHHC-type containing 1 [Homo sapiens] 31 0.24
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
gi|169211906 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
>gi|169201702 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 196 bits (498), Expect = 3e-51
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 MITNRPTAPCASPTAPAGCKSRRPRSMRAAAPGLPGPRGSGARAFGNLRCAKSVRRRGLS 60
MITNRPTAPCASPTAPAGCKSRRPRSMRAAAPGLPGPRGSGARAFGNLRCAKSVRRRGLS
Sbjct: 1 MITNRPTAPCASPTAPAGCKSRRPRSMRAAAPGLPGPRGSGARAFGNLRCAKSVRRRGLS 60
Query: 61 PPPLASARERQLAWLFQRKQRLSDMNTVTLTTRPT 95
PPPLASARERQLAWLFQRKQRLSDMNTVTLTTRPT
Sbjct: 61 PPPLASARERQLAWLFQRKQRLSDMNTVTLTTRPT 95
>gi|113422095 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 196 bits (498), Expect = 3e-51
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 MITNRPTAPCASPTAPAGCKSRRPRSMRAAAPGLPGPRGSGARAFGNLRCAKSVRRRGLS 60
MITNRPTAPCASPTAPAGCKSRRPRSMRAAAPGLPGPRGSGARAFGNLRCAKSVRRRGLS
Sbjct: 1 MITNRPTAPCASPTAPAGCKSRRPRSMRAAAPGLPGPRGSGARAFGNLRCAKSVRRRGLS 60
Query: 61 PPPLASARERQLAWLFQRKQRLSDMNTVTLTTRPT 95
PPPLASARERQLAWLFQRKQRLSDMNTVTLTTRPT
Sbjct: 61 PPPLASARERQLAWLFQRKQRLSDMNTVTLTTRPT 95
>gi|134142824 forkhead box D2 [Homo sapiens]
Length = 495
Score = 34.3 bits (77), Expect = 0.022
Identities = 27/72 (37%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 6 PTAPCASPTAPAGCKSRRPRSMRAAAPGLPGPRGSGARAFGNLRCAKSVRRRGLSPPPLA 65
P P AS A AG + P + PG PGP G A L CAK+ LSPP
Sbjct: 320 PGPPTASVFAGAG-SAPAPAPASGSGPG-PGPAGLPAFLGAELGCAKAFYAASLSPPAAG 377
Query: 66 SARERQLAWLFQ 77
+A A L Q
Sbjct: 378 TAAGLPTALLRQ 389
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 18 GCKSRRPRSMR----AAAPGLPGPRGSGAR 43
GC PR++ AAA G PGP + AR
Sbjct: 76 GCSDGEPRALASRGAAAAAGSPGPGAAAAR 105
>gi|4557743 Mediterranean fever protein [Homo sapiens]
Length = 781
Score = 33.9 bits (76), Expect = 0.029
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 15 APAGCKSRRPRSMRAAAPGLP-GPRGSGARAFG----NLRCAKSVRRRGLSPPPLASARE 69
A + +PRS++ P P G G+G R +G +LRC++ RGLS PL+ RE
Sbjct: 106 ASSSLGENKPRSLKT--PDHPEGNEGNGPRPYGGGAASLRCSQPEAGRGLSRKPLSKRRE 163
Query: 70 R 70
+
Sbjct: 164 K 164
Score = 28.9 bits (63), Expect = 0.93
Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 14/87 (16%)
Query: 2 ITNRPTAPCASPTAPA-------GCKSRRPRSMRAAAPGLPGPRGSGARAFGNLRCAKSV 54
+T RP ASP A G R S A G P+ SG+R+ G RC S
Sbjct: 302 VTGRPPDTAASPRCHAQEGDPVDGTCVRDSCSFPEAVSG--HPQASGSRSPGCPRCQDSH 359
Query: 55 RRR---GLSPPPLASARE--RQLAWLF 76
R+ LSP PL + +Q+ LF
Sbjct: 360 ERKSPGSLSPQPLPQCKRHLKQVQLLF 386
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 33.5 bits (75), Expect = 0.038
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 6 PTAPCASPTAPAGCKSRRPRSMRAAAPGLPGPRGSGARAFGNLRCAKSVRRRGLSPPPLA 65
P AP A P PA SR R + A+ P L P G+ A + S R G +P A
Sbjct: 799 PAAPLAGPALPARRLSRASRPLSASQPSL--PHGAPGPAASTRPASSSTPRLGPTPAARA 856
Query: 66 SA 67
+A
Sbjct: 857 AA 858
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 33.5 bits (75), Expect = 0.038
Identities = 21/57 (36%), Positives = 25/57 (43%)
Query: 13 PTAPAGCKSRRPRSMRAAAPGLPGPRGSGARAFGNLRCAKSVRRRGLSPPPLASARE 69
PT P G R S PG PGP G +A K+ +R LS PL SA +
Sbjct: 488 PTGPPGPPGPRGHSGEPGLPGPPGPPGPPGQAVMPEGFIKAGQRPSLSGTPLVSANQ 544
>gi|110815800 WD repeat domain 32 [Homo sapiens]
Length = 559
Score = 33.1 bits (74), Expect = 0.049
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 6 PTAPCASPTAPAGCKSRRPRSMRAAAPGLPGPRGSGARAFGNLRCAKSVRRRG---LSPP 62
P +P +A AG + P +AAA G P P GA A A+S RR G LSP
Sbjct: 6 PHSPGGDGSAGAGAEEPTPHEGQAAATGPPSPLHPGADATHPPPPARSPRRPGAPSLSPA 65
Query: 63 P 63
P
Sbjct: 66 P 66
Score = 32.7 bits (73), Expect = 0.064
Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 5 RPTAPCASPTAPAGCKSR--RPRSMRAAAPGLPGPRGSGARAFGNLRCAKSVRRRGLSPP 62
RP AP SP +G P S A+APG P P R G AKS R GL
Sbjct: 56 RPGAPSLSPAPRSGELGLPGAPESSTASAPGEPSPPSPPCRRPGPDCRAKSRGRHGLG-A 114
Query: 63 PLASARERQLAWLFQR 78
L R WL +R
Sbjct: 115 GLGGPGARLFGWLKER 130
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 33.1 bits (74), Expect = 0.049
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 5 RPTAPCASPTAPAGCKSRRPRSMRAAAPGLPGPR-----GSGARAFGNLRCAKSVRRRGL 59
RP AP P + S P + +AAA PG G G+R G+ + R G
Sbjct: 120 RPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGG 179
Query: 60 SPPPLASARER 70
PPPL R R
Sbjct: 180 QPPPLTCRRCR 190
>gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo
sapiens]
Length = 209
Score = 33.1 bits (74), Expect = 0.049
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 5 RPTAPCASPTAPAGCKSRRPRSMRAAAPGLPGPR-----GSGARAFGNLRCAKSVRRRGL 59
RP AP P + S P + +AAA PG G G+R G+ + R G
Sbjct: 120 RPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGG 179
Query: 60 SPPPLASARER 70
PPPL R R
Sbjct: 180 QPPPLTCRRCR 190
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 33.1 bits (74), Expect = 0.049
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 5 RPTAPCASPTAPAGCKSRRPRSMRAAAPGLPGPR-----GSGARAFGNLRCAKSVRRRGL 59
RP AP P + S P + +AAA PG G G+R G+ + R G
Sbjct: 120 RPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGG 179
Query: 60 SPPPLASARER 70
PPPL R R
Sbjct: 180 QPPPLTCRRCR 190
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 33.1 bits (74), Expect = 0.049
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 5 RPTAPCASPTAPAGCKSRRPRSMRAAAPGLPGPR-----GSGARAFGNLRCAKSVRRRGL 59
RP AP P + S P + +AAA PG G G+R G+ + R G
Sbjct: 120 RPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGG 179
Query: 60 SPPPLASARER 70
PPPL R R
Sbjct: 180 QPPPLTCRRCR 190
>gi|169217315 PREDICTED: hypothetical protein [Homo sapiens]
Length = 2061
Score = 32.3 bits (72), Expect = 0.084
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 6 PTAPCASPTAPAGCKSRRPRSMRAAAPGLPGPRGSGARAF----GNLRCAKSVRRRGLSP 61
PT P S A +S+ P ++ LPG R RA G + +S RR ++P
Sbjct: 157 PTVPSESKRALRDDRSQEPTAIAPTPGALPGDRSGAPRAIAPTPGAMLSGRSRARRAIAP 216
Query: 62 PPLA 65
P A
Sbjct: 217 TPSA 220
>gi|113430659 PREDICTED: hypothetical protein [Homo sapiens]
Length = 2061
Score = 32.3 bits (72), Expect = 0.084
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 6 PTAPCASPTAPAGCKSRRPRSMRAAAPGLPGPRGSGARAF----GNLRCAKSVRRRGLSP 61
PT P S A +S+ P ++ LPG R RA G + +S RR ++P
Sbjct: 157 PTVPSESKRALRDDRSQEPTAIAPTPGALPGDRSGAPRAIAPTPGAMLSGRSRARRAIAP 216
Query: 62 PPLA 65
P A
Sbjct: 217 TPSA 220
>gi|113430177 PREDICTED: hypothetical protein [Homo sapiens]
Length = 2028
Score = 32.3 bits (72), Expect = 0.084
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 6 PTAPCASPTAPAGCKSRRPRSMRAAAPGLPGPRGSGARAF----GNLRCAKSVRRRGLSP 61
PT P S A +S+ P ++ LPG R RA G + +S RR ++P
Sbjct: 157 PTVPSESKRALRDDRSQEPTAIAPTPGALPGDRSGAPRAIAPTPGAMLSGRSRARRAIAP 216
Query: 62 PPLA 65
P A
Sbjct: 217 TPSA 220
>gi|113430175 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1934
Score = 32.3 bits (72), Expect = 0.084
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 6 PTAPCASPTAPAGCKSRRPRSMRAAAPGLPGPRGSGARAF----GNLRCAKSVRRRGLSP 61
PT P S A +S+ P ++ LPG R RA G + +S RR ++P
Sbjct: 157 PTVPSESKRALRDDRSQEPTAIAPTPGALPGDRSGAPRAIAPTPGAMLSGRSRARRAIAP 216
Query: 62 PPLA 65
P A
Sbjct: 217 TPSA 220
>gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens]
Length = 1159
Score = 32.0 bits (71), Expect = 0.11
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 2 ITNRPTAPCASPTAPAGCKSRRPRSMRAAAPG-----LPGPRGSGARAFGNLRCAKSVRR 56
+T P +P A P G + R+ R APG PGP GA A G R ++
Sbjct: 64 LTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAAGYRRWERAAPL 123
Query: 57 RGLS 60
G++
Sbjct: 124 AGVA 127
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
sapiens]
Length = 3969
Score = 31.6 bits (70), Expect = 0.14
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 11 ASPTAPAGCKSRRPRSMRAAAPGLPGP 37
ASPT+P G S R+A+P +PGP
Sbjct: 3507 ASPTSPGGSPSSPSSGQRSASPSVPGP 3533
>gi|21618325 forkhead box E1 [Homo sapiens]
Length = 373
Score = 31.6 bits (70), Expect = 0.14
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 16 PAGCKSRRPRSMRAAAPGLPGPRGSGARAFGNLRCAKSVRRRGLSPPP 63
PAGC RP + A A GP G+ + G+ A + R G + PP
Sbjct: 263 PAGCTGARPANPSAYAAAYAGPDGAYPQGAGSAIFAAAGRLAGPASPP 310
>gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]
Length = 654
Score = 31.6 bits (70), Expect = 0.14
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 2 ITNRPTAPCASPTAPAGCKSRRPRSMRAAAPGLPGPRG 39
I + C P P G + +R R + PG PGP+G
Sbjct: 110 IAREAPSECNCPAGPPGKRGKRGRRGESGPPGQPGPQG 147
>gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]
Length = 642
Score = 31.6 bits (70), Expect = 0.14
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 2 ITNRPTAPCASPTAPAGCKSRRPRSMRAAAPGLPGPRG 39
I + C P P G + +R R + PG PGP+G
Sbjct: 110 IAREAPSECNCPAGPPGKRGKRGRRGESGPPGQPGPQG 147
>gi|153792575 hypothetical protein LOC90120 [Homo sapiens]
Length = 135
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 5 RPTAPCASPTAPAGCKSRRPRSMRAAAPGLPGPRGSGARAFGNLRCAKSVRRRGLSPPP 63
RP PCA PT PA + + R A G S A ++ L A S+RR G+ PP
Sbjct: 48 RPAGPCAPPTWPAPSTTTSTCTSRRA-----GCTASSA-SYSTLAAACSLRRSGVRWPP 100
>gi|4758168 distal-less homeobox 2 [Homo sapiens]
Length = 328
Score = 31.2 bits (69), Expect = 0.19
Identities = 29/89 (32%), Positives = 34/89 (38%), Gaps = 16/89 (17%)
Query: 9 PCASP--TAPAGCKSRRPRSMRAAAPGLPGPRGSGARAFGNLRCAKSVRRRGLSPPPLAS 66
PCASP +APA P+ M A G PG GSGA + G+ SP AS
Sbjct: 229 PCASPPVSAPASWDFGVPQRM--AGGGGPGSGGSGAGSSGS------------SPSSAAS 274
Query: 67 ARERQLAWLFQRKQRLSDMNTVTLTTRPT 95
A W Q S + PT
Sbjct: 275 AFLGNYPWYHQTSGSASHLQATAPLLHPT 303
>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 653
Score = 31.2 bits (69), Expect = 0.19
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
Query: 5 RPTAPCASPTAPAGCKSRRPRSMRAAAPGLPG----PRGSGARAFGNLRCAKSVRRRGLS 60
RP P ++ P G PR APG PG P G+G G AK R+R S
Sbjct: 36 RPPEPPSTRQRPPG-----PRENSPVAPGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGS 90
Query: 61 PPPLASARERQLAWLFQR 78
R + A+ +++
Sbjct: 91 DSKSGKPRRARTAFTYEQ 108
>gi|116089312 heparan sulfate (glucosamine) 3-O-sulfotransferase 6
[Homo sapiens]
Length = 311
Score = 31.2 bits (69), Expect = 0.19
Identities = 32/105 (30%), Positives = 36/105 (34%), Gaps = 19/105 (18%)
Query: 9 PCASPTAPAGCKSRRPRSM-RAAAPGLPGPRGSGARAFGN-----------------LRC 50
P A APA S S+ R APGLP G G R F LR
Sbjct: 22 PAARAPAPAPAPSEPSSSVHRPGAPGLPLASGPGRRRFPQALIVGVKKGGTRALLEFLRL 81
Query: 51 AKSVRRRGLSPPPLASARERQLAWLFQRKQRLSDMNTVTLTTRPT 95
VR G P ER LAW R D +T+ P+
Sbjct: 82 HPDVRALGSEPHFFDRCYERGLAWYRSLMPRTLD-GQITMEKTPS 125
>gi|239753331 PREDICTED: hypothetical protein [Homo sapiens]
Length = 138
Score = 30.8 bits (68), Expect = 0.24
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 6 PTAPCASPTAPAGCKSRRPRSMRAAAPGLPGPRGSGARAFGNLRCAKSVRRRGLSPPPLA 65
P A ASP GC++ P RA LP PRGS ++ R RRR S
Sbjct: 11 PEAQLASPLTGTGCRTS-PHLARA----LPQPRGSSSQTIKRKRGEARKRRRAASVAKDP 65
Query: 66 SARE 69
+ RE
Sbjct: 66 TKRE 69
>gi|239747900 PREDICTED: hypothetical protein XP_002346471 [Homo
sapiens]
Length = 138
Score = 30.8 bits (68), Expect = 0.24
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 6 PTAPCASPTAPAGCKSRRPRSMRAAAPGLPGPRGSGARAFGNLRCAKSVRRRGLSPPPLA 65
P A ASP GC++ P RA LP PRGS ++ R RRR S
Sbjct: 11 PEAQLASPLTGTGCRTS-PHLARA----LPQPRGSSSQTIKRKRGEARKRRRAASVAKDP 65
Query: 66 SARE 69
+ RE
Sbjct: 66 TKRE 69
>gi|239741792 PREDICTED: hypothetical protein XP_002342302 [Homo
sapiens]
Length = 138
Score = 30.8 bits (68), Expect = 0.24
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 6 PTAPCASPTAPAGCKSRRPRSMRAAAPGLPGPRGSGARAFGNLRCAKSVRRRGLSPPPLA 65
P A ASP GC++ P RA LP PRGS ++ R RRR S
Sbjct: 11 PEAQLASPLTGTGCRTS-PHLARA----LPQPRGSSSQTIKRKRGEARKRRRAASVAKDP 65
Query: 66 SARE 69
+ RE
Sbjct: 66 TKRE 69
>gi|24307963 zinc finger, DHHC-type containing 1 [Homo sapiens]
Length = 485
Score = 30.8 bits (68), Expect = 0.24
Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 26/89 (29%)
Query: 4 NRPTAP--------CASPTAPAGCKSRRPRSMRA-----------AAPGLPGPRGSGARA 44
+RP +P CA P ++P R+ A P L RG GA
Sbjct: 339 SRPASPDPTPGRRDCAGPPVQVEWDRKKPLPWRSPLLLLAMWGPQAPPCLCRKRGRGAC- 397
Query: 45 FGNLRCAK---SVRRRGLSPPPLASARER 70
++C + +RRRGL PP A AR R
Sbjct: 398 ---IKCERLRPRIRRRGLGPPAAAPARRR 423
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 30.4 bits (67), Expect = 0.32
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 11 ASPTAPAGCKSRRPRSMRAAAPGLPGPRGSGARAFGNLRCAKSVRRR------GLSPPPL 64
A+P AP G R P ++ AAP P + A+G CA RR G S PP
Sbjct: 274 AAPRAPGGGGGRNPGALGRAAP----PSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPA 329
Query: 65 ASARERQLAWLFQRKQR 81
S + + +R++R
Sbjct: 330 TSGNGERCRFCRRRRRR 346
>gi|169211906 PREDICTED: hypothetical protein [Homo sapiens]
Length = 210
Score = 30.4 bits (67), Expect = 0.32
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 15/73 (20%)
Query: 4 NRPTAPC-ASPTAPAGCK------------SRRPRSMRAAAPGLPGPRGSGARAFGNLRC 50
+RPT P A P P C RPR ++ AA LPG RG G+ A + R
Sbjct: 109 HRPTWPRRAEPQVPEECSLPAGVLPAQHGPEPRPRGLQPAAHQLPGERGRGSTAAQHPR- 167
Query: 51 AKSVRRRGLSPPP 63
++ R PP
Sbjct: 168 -RNTESREAQAPP 179
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.130 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,669,509
Number of Sequences: 37866
Number of extensions: 249140
Number of successful extensions: 2495
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 138
Number of HSP's that attempted gapping in prelim test: 2073
Number of HSP's gapped (non-prelim): 561
length of query: 95
length of database: 18,247,518
effective HSP length: 66
effective length of query: 29
effective length of database: 15,748,362
effective search space: 456702498
effective search space used: 456702498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.