Guide to the Human Genome
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Name: LOC100131091 Sequence: fasta or formatted (210aa) NCBI GI: 169211906
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {210aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         21           2
 C cysteine            2.4          5           1
 D aspartate           2.4          5           1
 E glutamate           7.1         15           2
 F phenylalanine       1.4          3           1
 G glycine            13.3         28           3
 H histidine           4.3          9           1
 I isoleucine          1.0          2           1
 K lysine              0.5          1           1
 L leucine             7.6         16           3
 M methionine          0.5          1           1
 N asparagine          1.4          3           1
 P proline            11.4         24           2
 Q glutamine           4.8         10           1
 R arginine           15.2         32           6
 S serine              6.7         14           2
 T threonine           3.8          8           1
 V valine              4.3          9           1
 W tryptophan          1.4          3           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131091          1.000   PREDICTED: hypothetical protein 
FLJ37078              0.055   hypothetical protein LOC222183 
BAT2                  0.045   HLA-B associated transcript-2 
SRRM2                 0.045   splicing coactivator subunit SRm300 
C10orf95              0.045   hypothetical protein LOC79946 
LOC100132891          0.041   PREDICTED: hypothetical protein 
LOC100132891          0.041   PREDICTED: hypothetical protein 
LOC100132891          0.041   PREDICTED: hypothetical protein 
CDC2L5                0.038   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.038   cell division cycle 2-like 5 isoform 2 
LOC728650             0.036   PREDICTED: hypothetical protein 
LOC728650             0.033   PREDICTED: hypothetical protein 
LOC728940             0.033   PREDICTED: hypothetical protein 
LOC728940             0.033   PREDICTED: hypothetical protein 
LOC728940             0.033   PREDICTED: hypothetical protein 
SYDE1                 0.033   synapse defective 1, Rho GTPase, homolog 1 
LOC100289242          0.033   PREDICTED: hypothetical protein XP_002342243 
CACNA1B               0.033   calcium channel, voltage-dependent, N type, alpha 1B ...
SCARF2                0.033   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.033   scavenger receptor class F, member 2 isoform 2 [Homo...
SRRM1                 0.033   serine/arginine repetitive matrix 1 
PRB2                  0.033   proline-rich protein BstNI subfamily 2 
KLHDC7B               0.033   kelch domain containing 7B 
LOC100129129          0.031   PREDICTED: hypothetical protein 
LOC100127891          0.031   PREDICTED: similar to hCG2042508 
LOC100127891          0.031   PREDICTED: similar to hCG2042508 
LOC100127891          0.031   PREDICTED: similar to hCG2042508 
CRKRS                 0.031   Cdc2-related kinase, arginine/serine-rich isoform 2...
CRKRS                 0.031   Cdc2-related kinase, arginine/serine-rich isoform 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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