Guide to the Human Genome
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Name: LOC730883 Sequence: fasta or formatted (95aa) NCBI GI: 169201702
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {95aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.7         13           3
 C cysteine            3.2          3           1
 D aspartate           1.1          1           1
 E glutamate           1.1          1           1
 F phenylalanine       2.1          2           1
 G glycine             7.4          7           1
 H histidine           0.0          0           0
 I isoleucine          1.1          1           1
 K lysine              3.2          3           1
 L leucine             8.4          8           1
 M methionine          3.2          3           1
 N asparagine          3.2          3           1
 P proline            12.6         12           3
 Q glutamine           3.2          3           1
 R arginine           16.8         16           3
 S serine              8.4          8           1
 T threonine           8.4          8           2
 V valine              2.1          2           1
 W tryptophan          1.1          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC730883             1.000   PREDICTED: hypothetical protein 
FOXD2                 0.053   forkhead box D2 
MEFV                  0.053   Mediterranean fever protein 
HCN2                  0.047   hyperpolarization activated cyclic nucleotide-gated...
COL10A1               0.047   type X collagen alpha 1 precursor 
DCAF10                0.047   WD repeat domain 32 
LOC100291634          0.047   PREDICTED: hypothetical protein XP_002346062 
LOC100291096          0.047   PREDICTED: hypothetical protein XP_002346952 
LOC100287232          0.047   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.047   PREDICTED: hypothetical protein 
LOC728317             0.041   PREDICTED: hypothetical protein 
LOC728317             0.041   PREDICTED: hypothetical protein 
LOC728317             0.041   PREDICTED: hypothetical protein 
LOC728307             0.041   PREDICTED: hypothetical protein 
SORCS2                0.041   VPS10 domain receptor protein SORCS 2 
MLL                   0.041   myeloid/lymphoid or mixed-lineage leukemia protein [...
FOXE1                 0.041   forkhead box E1 
COL25A1               0.041   collagen, type XXV, alpha 1 isoform 1 
COL25A1               0.041   collagen, type XXV, alpha 1 isoform 2 
C9orf69               0.041   hypothetical protein LOC90120 
DLX2                  0.035   distal-less homeobox 2 
NKX1-1                0.035   PREDICTED: NK1 homeobox 1 
HS3ST6                0.035   heparan sulfate (glucosamine) 3-O-sulfotransferase ...
LOC100293961          0.035   PREDICTED: hypothetical protein 
LOC100290753          0.035   PREDICTED: hypothetical protein XP_002346471 
LOC100289293          0.035   PREDICTED: hypothetical protein XP_002342302 
ZDHHC1                0.035   zinc finger, DHHC-type containing 1 
LOC100127891          0.029   PREDICTED: hypothetical protein 
LOC100131091          0.029   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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