Guide to the Human Genome
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Name: C9orf69 Sequence: fasta or formatted (135aa) NCBI GI: 153792575
Description:

hypothetical protein LOC90120

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            20.7         28           4
 C cysteine           11.9         16           5
 D aspartate           0.0          0           0
 E glutamate           0.0          0           0
 F phenylalanine       1.5          2           1
 G glycine             5.2          7           2
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine              0.0          0           0
 L leucine             2.2          3           1
 M methionine          1.5          2           1
 N asparagine          0.0          0           0
 P proline            14.1         19           4
 Q glutamine           0.7          1           1
 R arginine            8.1         11           2
 S serine             14.8         20           2
 T threonine          11.9         16           3
 V valine              0.7          1           1
 W tryptophan          5.2          7           1
 Y tyrosine            1.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC90120 
KRTAP4-9              0.079   keratin associated protein 4-9 
KRTAP4-12             0.075   keratin associated protein 4-12 
KRTAP4-9              0.071   PREDICTED: keratin associated protein 4-9 isoform 1...
AHDC1                 0.071   AT hook, DNA binding motif, containing 1 
KRTAP4-9              0.071   PREDICTED: keratin associated protein 4-9 isoform 2...
LOC729815             0.064   PREDICTED: hypothetical protein 
CASKIN1               0.061   CASK interacting protein 1 
CECR6                 0.061   cat eye syndrome chromosome region, candidate 6 isof...
KRTAP4-7              0.061   keratin associated protein 4-7 
KRTAP4-8              0.061   PREDICTED: keratin associated protein 4.8 
KRTAP4-7              0.061   PREDICTED: keratin associated protein 4-7 
KRTAP4-8              0.061   keratin associated protein 4.8 
KRTAP4-8              0.061   PREDICTED: keratin associated protein 4-8 isoform 3...
KRTAP4-8              0.061   PREDICTED: keratin associated protein 4-8 isoform 2...
KRTAP4-8              0.061   PREDICTED: keratin associated protein 4-8 isoform 1...
LOC100134267          0.061   PREDICTED: similar to keratin associated protein 4-...
LOC100134267          0.061   PREDICTED: similar to keratin associated protein 4-...
LOC100134267          0.061   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-8              0.057   PREDICTED: keratin associated protein 4-8 
C10orf95              0.054   hypothetical protein LOC79946 
LOC729815             0.054   PREDICTED: hypothetical protein 
MAPK7                 0.054   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.054   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.054   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.054   mitogen-activated protein kinase 7 isoform 2 
KRTAP5-9              0.054   keratin associated protein 5-9 
WASL                  0.054   Wiskott-Aldrich syndrome gene-like protein 
FLJ10404              0.054   hypothetical protein LOC54540 
KRTAP4-3              0.054   keratin associated protein 4-3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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