Guide to the Human Genome
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Name: LOC100289293 Sequence: fasta or formatted (138aa) NCBI GI: 239741792
Description:

PREDICTED: hypothetical protein XP_002342302

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         15           2
 C cysteine            2.2          3           1
 D aspartate           2.2          3           1
 E glutamate           4.3          6           1
 F phenylalanine       1.4          2           1
 G glycine             8.7         12           2
 H histidine           3.6          5           1
 I isoleucine          1.4          2           1
 K lysine              6.5          9           1
 L leucine             6.5          9           2
 M methionine          0.7          1           1
 N asparagine          0.0          0           0
 P proline            15.2         21           2
 Q glutamine           5.8          8           1
 R arginine           13.0         18           3
 S serine             10.9         15           3
 T threonine           5.8          8           1
 V valine              0.7          1           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342302 
LOC100293961          1.000   PREDICTED: hypothetical protein 
LOC100290753          1.000   PREDICTED: hypothetical protein XP_002346471 
LOC100288017          0.347   PREDICTED: hypothetical protein XP_002343778 
LOC100128382          0.179   PREDICTED: hypothetical protein 
LOC100128382          0.179   PREDICTED: hypothetical protein 
LOC100128382          0.179   PREDICTED: hypothetical protein 
GLTSCR1               0.073   glioma tumor suppressor candidate region gene 1 [Ho...
PHLDA1                0.057   pleckstrin homology-like domain, family A, member 1 ...
PCLO                  0.057   piccolo isoform 2 
PCLO                  0.057   piccolo isoform 1 
MAPK8IP3              0.053   mitogen-activated protein kinase 8 interacting prote...
MAPK8IP3              0.053   mitogen-activated protein kinase 8 interacting prote...
LOC643355             0.050   PREDICTED: hypothetical protein 
LOC643355             0.050   PREDICTED: hypothetical protein 
DDN                   0.046   dendrin 
SRCAP                 0.046   Snf2-related CBP activator protein 
LOC100292727          0.046   PREDICTED: hypothetical protein 
LOC100287920          0.046   PREDICTED: hypothetical protein XP_002344198 
FLJ37078              0.046   hypothetical protein LOC222183 
LOC400236             0.042   PREDICTED: hypothetical protein 
LOC400236             0.042   PREDICTED: hypothetical protein 
SRRM1                 0.042   serine/arginine repetitive matrix 1 
LOC100293385          0.038   PREDICTED: hypothetical protein 
LOC100290381          0.038   PREDICTED: hypothetical protein XP_002346884 
LOC100289601          0.038   PREDICTED: hypothetical protein XP_002342725 
CTDP1                 0.038   CTD (carboxy-terminal domain, RNA polymerase II, pol...
LOC100131414          0.038   PREDICTED: hypothetical protein 
LOC100131414          0.038   PREDICTED: hypothetical protein 
LOC100131414          0.038   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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