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Search of human proteins with 169181246
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169181246 PREDICTED: hypothetical protein [Homo sapiens]
(176 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169179021 PREDICTED: hypothetical protein [Homo sapiens] 374 e-104
gi|169181246 PREDICTED: hypothetical protein [Homo sapiens] 374 e-104
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 40 8e-04
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 40 0.001
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 39 0.003
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ... 38 0.004
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [... 38 0.004
gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo ... 37 0.007
gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo ... 37 0.007
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 37 0.009
gi|22749289 hypothetical protein LOC170062 [Homo sapiens] 37 0.009
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 36 0.020
gi|239757987 PREDICTED: hypothetical protein [Homo sapiens] 35 0.034
gi|239746104 PREDICTED: hypothetical protein XP_002344198 [Homo ... 35 0.034
gi|118402590 myosin XV [Homo sapiens] 35 0.044
gi|163965366 nascent polypeptide-associated complex alpha subuni... 35 0.044
gi|239751624 PREDICTED: hypothetical protein XP_002347938 [Homo ... 34 0.057
gi|239746135 PREDICTED: hypothetical protein XP_002344205 [Homo ... 34 0.057
gi|239743660 PREDICTED: hypothetical protein XP_002342926 [Homo ... 34 0.057
gi|169210256 PREDICTED: hypothetical protein [Homo sapiens] 34 0.075
gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo ... 34 0.075
gi|239757099 PREDICTED: hypothetical protein [Homo sapiens] 33 0.098
gi|169171690 PREDICTED: hypothetical protein [Homo sapiens] 33 0.098
gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo ... 33 0.098
gi|239749482 PREDICTED: hypothetical protein [Homo sapiens] 33 0.098
gi|169171833 PREDICTED: hypothetical protein [Homo sapiens] 33 0.098
gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo ... 33 0.098
gi|239743620 PREDICTED: hypothetical protein [Homo sapiens] 33 0.098
gi|169171083 PREDICTED: hypothetical protein [Homo sapiens] 33 0.098
gi|239508966 PREDICTED: hypothetical protein [Homo sapiens] 33 0.098
>gi|169179021 PREDICTED: hypothetical protein [Homo sapiens]
Length = 176
Score = 374 bits (959), Expect = e-104
Identities = 176/176 (100%), Positives = 176/176 (100%)
Query: 1 METRLVPKYNEDSWNKGVCRFLNLTAEQARSQAPGFALLEGGPRRRRRSGSPALPLSAPC 60
METRLVPKYNEDSWNKGVCRFLNLTAEQARSQAPGFALLEGGPRRRRRSGSPALPLSAPC
Sbjct: 1 METRLVPKYNEDSWNKGVCRFLNLTAEQARSQAPGFALLEGGPRRRRRSGSPALPLSAPC 60
Query: 61 GSRGPWLPGSLAPAARANPERTRASRSRPEVPARHYQTRPQPRILADPTGPQEGAAHWGP 120
GSRGPWLPGSLAPAARANPERTRASRSRPEVPARHYQTRPQPRILADPTGPQEGAAHWGP
Sbjct: 61 GSRGPWLPGSLAPAARANPERTRASRSRPEVPARHYQTRPQPRILADPTGPQEGAAHWGP 120
Query: 121 HGLAIGDRDRKVAPRGPYRPGTPTRARKLQNVLSWNIPKRPYIYPRDFTVDLTRPE 176
HGLAIGDRDRKVAPRGPYRPGTPTRARKLQNVLSWNIPKRPYIYPRDFTVDLTRPE
Sbjct: 121 HGLAIGDRDRKVAPRGPYRPGTPTRARKLQNVLSWNIPKRPYIYPRDFTVDLTRPE 176
>gi|169181246 PREDICTED: hypothetical protein [Homo sapiens]
Length = 176
Score = 374 bits (959), Expect = e-104
Identities = 176/176 (100%), Positives = 176/176 (100%)
Query: 1 METRLVPKYNEDSWNKGVCRFLNLTAEQARSQAPGFALLEGGPRRRRRSGSPALPLSAPC 60
METRLVPKYNEDSWNKGVCRFLNLTAEQARSQAPGFALLEGGPRRRRRSGSPALPLSAPC
Sbjct: 1 METRLVPKYNEDSWNKGVCRFLNLTAEQARSQAPGFALLEGGPRRRRRSGSPALPLSAPC 60
Query: 61 GSRGPWLPGSLAPAARANPERTRASRSRPEVPARHYQTRPQPRILADPTGPQEGAAHWGP 120
GSRGPWLPGSLAPAARANPERTRASRSRPEVPARHYQTRPQPRILADPTGPQEGAAHWGP
Sbjct: 61 GSRGPWLPGSLAPAARANPERTRASRSRPEVPARHYQTRPQPRILADPTGPQEGAAHWGP 120
Query: 121 HGLAIGDRDRKVAPRGPYRPGTPTRARKLQNVLSWNIPKRPYIYPRDFTVDLTRPE 176
HGLAIGDRDRKVAPRGPYRPGTPTRARKLQNVLSWNIPKRPYIYPRDFTVDLTRPE
Sbjct: 121 HGLAIGDRDRKVAPRGPYRPGTPTRARKLQNVLSWNIPKRPYIYPRDFTVDLTRPE 176
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 40.4 bits (93), Expect = 8e-04
Identities = 30/93 (32%), Positives = 37/93 (39%), Gaps = 8/93 (8%)
Query: 34 PGFALLEGGPRRRRRSGSPALPLSAPCGSRGPWLPGSLAPAARANPERTRASRSRPEVPA 93
PG +G P + +GSP S P GS GP PGS P P+ R P VP
Sbjct: 419 PGAIGTDGTPGAKGPTGSPGT--SGPPGSAGP--PGSPGPQGSTGPQGIRGQPGDPGVPG 474
Query: 94 RHYQTRPQ----PRILADPTGPQEGAAHWGPHG 122
+ P+ P + P GP GP G
Sbjct: 475 FKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRG 507
Score = 26.9 bits (58), Expect = 9.2
Identities = 29/103 (28%), Positives = 34/103 (33%), Gaps = 16/103 (15%)
Query: 48 RSGSPALPLSAPCGSRG-PWLPGSLAPAARANPERTRASRSRPEVPARHYQTRPQPRILA 106
R G P LP G+RG PG P + P RP P R QP +
Sbjct: 562 RPGEPGLP-----GARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGS-IGIRGQPGSMG 615
Query: 107 ---------DPTGPQEGAAHWGPHGLAIGDRDRKVAPRGPYRP 140
DP P E P +D +V P GP P
Sbjct: 616 LPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGP 658
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 39.7 bits (91), Expect = 0.001
Identities = 37/123 (30%), Positives = 44/123 (35%), Gaps = 24/123 (19%)
Query: 38 LLEGGPRRRRRSGSPALPLSAPCGSRGPWLPGSLAPAARANPERTR--------ASRSRP 89
LLE P R SG + AP P P L P A R R AS
Sbjct: 269 LLEVSPEERPSSGQQDV---APDRGPEPGPPAPLPPPGGARARRARLQHSSALTASVEEG 325
Query: 90 EVPARHYQTRPQ----------PRILADPTGPQEGAAHWGPHGLAIGDRDRKVAPRGPYR 139
VP +RP P + +P P EG + GP G G +D + P GP
Sbjct: 326 GVPGEDPSSRPATPELAEPESAPTLRVEPPSPPEGPPNPGPDG---GKQDGEAPPAGPCA 382
Query: 140 PGT 142
P T
Sbjct: 383 PAT 385
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 38.5 bits (88), Expect = 0.003
Identities = 34/105 (32%), Positives = 41/105 (39%), Gaps = 18/105 (17%)
Query: 26 AEQARSQAPGFALLEGGPRRRRRSGSPALPLSAPCGSRGPWLPGSLAPAARANPERTRAS 85
A+ Q PG L GP R + P P R P LP S + A A+ S
Sbjct: 1204 ADLRPKQPPGRGL---GPGRAQAGARPPAP-------RSPRLPASTSAARNASASPRSQS 1253
Query: 86 RSRPEVPARHYQTRP-------QPRILADPTG-PQEGAAHWGPHG 122
SR E P+ +Q RP P A P G P G + GP G
Sbjct: 1254 LSRRESPSPSHQARPGVPPPRGVPPARAQPDGTPSPGGSKKGPRG 1298
Score = 30.8 bits (68), Expect = 0.63
Identities = 36/124 (29%), Positives = 47/124 (37%), Gaps = 14/124 (11%)
Query: 27 EQARSQAPGFALLEGGPRRRRRSGSPALPLSAPCGSRGPWLPGSLAPAAR---ANPERTR 83
E + P AL PR+ R+ + + P G R P + PA+R A P
Sbjct: 1131 EDTPASEPAAAL----PRKSGRAAATRSRIPRPIGLRMPMPVAAQQPASRSHGAAPALDT 1186
Query: 84 ASRSRPEVPARHYQTRPQPRILADPTGPQEGAAHWGPHGLAIGDRDRKVAPRGPYRPGTP 143
A SR ++ QT P AD Q GP G R APR P P +
Sbjct: 1187 AITSRLQL-----QTPPGSATAADLRPKQPPGRGLGPGRAQAG--ARPPAPRSPRLPAST 1239
Query: 144 TRAR 147
+ AR
Sbjct: 1240 SAAR 1243
>gi|93141049 collagen, type XII, alpha 1 short isoform precursor [Homo
sapiens]
Length = 1899
Score = 38.1 bits (87), Expect = 0.004
Identities = 32/104 (30%), Positives = 38/104 (36%), Gaps = 6/104 (5%)
Query: 43 PRRRRRSGSPALPLSAPCGSRGPWLPGSLAPAARANPERTRASRSRPEVPARHYQTRPQP 102
P RR PA P S C PG PA + R R P P
Sbjct: 1560 PSRRDEGKCPAFPNSCTCTQDSVGPPGPPGPAGGPGAKGPRGERGISGAIGP-----PGP 1614
Query: 103 RILADPTGPQEGAAHWGPHGLAI-GDRDRKVAPRGPYRPGTPTR 145
R P GPQ GP+GL+I G++ R+ PG P R
Sbjct: 1615 RGDIGPPGPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPGLPGR 1658
>gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo
sapiens]
Length = 3063
Score = 38.1 bits (87), Expect = 0.004
Identities = 32/104 (30%), Positives = 38/104 (36%), Gaps = 6/104 (5%)
Query: 43 PRRRRRSGSPALPLSAPCGSRGPWLPGSLAPAARANPERTRASRSRPEVPARHYQTRPQP 102
P RR PA P S C PG PA + R R P P
Sbjct: 2724 PSRRDEGKCPAFPNSCTCTQDSVGPPGPPGPAGGPGAKGPRGERGISGAIGP-----PGP 2778
Query: 103 RILADPTGPQEGAAHWGPHGLAI-GDRDRKVAPRGPYRPGTPTR 145
R P GPQ GP+GL+I G++ R+ PG P R
Sbjct: 2779 RGDIGPPGPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPGLPGR 2822
>gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo
sapiens]
Length = 177
Score = 37.4 bits (85), Expect = 0.007
Identities = 29/76 (38%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 38 LLEGGPRRRRRSGSPALPLSAPCGSRGPWLPGSLAPAARANPERTRASRS--RPEVPARH 95
L GG R R R G AL L +P P SL P A A+P R+ RP A
Sbjct: 40 LPSGGLRLRARPGRRALGLPSPLELAAP----SLVPNASASPRPVSCRRAPPRPVPGAAR 95
Query: 96 YQTRPQPRILADPTGP 111
++ RP+PR P GP
Sbjct: 96 WRGRPEPR-PGSPAGP 110
>gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo
sapiens]
Length = 177
Score = 37.4 bits (85), Expect = 0.007
Identities = 29/76 (38%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 38 LLEGGPRRRRRSGSPALPLSAPCGSRGPWLPGSLAPAARANPERTRASRS--RPEVPARH 95
L GG R R R G AL L +P P SL P A A+P R+ RP A
Sbjct: 40 LPSGGLRLRARPGRRALGLPSPLELAAP----SLVPNASASPRPVSCRRAPPRPVPGAAR 95
Query: 96 YQTRPQPRILADPTGP 111
++ RP+PR P GP
Sbjct: 96 WRGRPEPR-PGSPAGP 110
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 37.0 bits (84), Expect = 0.009
Identities = 34/114 (29%), Positives = 42/114 (36%), Gaps = 14/114 (12%)
Query: 34 PGFALLEGGPRRRRRSGSPALP----LSAPCGSRGPWLPGSLAPAARANPERTRASRSRP 89
PGF +G P + G P LP LS G + LPG + P + P
Sbjct: 365 PGFPGAQGEPGSQGEPGDPGLPGPPGLSIGDGDQRRGLPGEMGP---------KGFIGDP 415
Query: 90 EVPARHYQTRPQPRILADPTGPQEGAAHWGPHGLAIGDRDRKVAPRGPYRPGTP 143
+PA Y P P P GP GP G G + K P PG+P
Sbjct: 416 GIPAL-YGGPPGPDGKRGPPGPPGLPGPPGPDGFLFGLKGAKGRAGFPGLPGSP 468
Score = 30.4 bits (67), Expect = 0.83
Identities = 36/120 (30%), Positives = 43/120 (35%), Gaps = 24/120 (20%)
Query: 35 GFALLEGGPRRRRRSGSPALPLS-------APCGSRGP-------WLPGSLAPAARANPE 80
GF L G P GSP S P G RGP PG PA +P
Sbjct: 299 GFPGLRGYPGLSGEKGSPGQKGSRGLDGYQGPDGPRGPKGEAGDPGPPG--LPAYSPHPS 356
Query: 81 RTRASRSRPEVPARHYQTRPQPRILADPTGPQEGAAHWGPHGLAIGDRDRKVAPRGPYRP 140
+ +R P P + Q DP P GP GL+IGD D++ G P
Sbjct: 357 LAKGARGDPGFPGAQGEPGSQGEP-GDPGLP-------GPPGLSIGDGDQRRGLPGEMGP 408
Score = 27.7 bits (60), Expect = 5.4
Identities = 26/81 (32%), Positives = 31/81 (38%), Gaps = 14/81 (17%)
Query: 34 PGFALLEGGPRRR------RRSGSPALP-LSAPCGSRG----PWLPGSLAPAARANPERT 82
PGFA +GGP R R G P P P GS+G P GS P P+
Sbjct: 707 PGFAGADGGPGPRGLPGDAGREGFPGPPGFIGPRGSKGAVGLPGPDGSPGPIGLPGPDGP 766
Query: 83 RASRSRPEVPARHYQTRPQPR 103
R +P +P PR
Sbjct: 767 PGERG---LPGEVLGAQPGPR 784
>gi|22749289 hypothetical protein LOC170062 [Homo sapiens]
Length = 645
Score = 37.0 bits (84), Expect = 0.009
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 14/113 (12%)
Query: 11 EDSWNKGVCRFLNLTAEQARSQAPGFALLEGGPRRRRRSGS---PALPLSAPCGSRGPWL 67
ED+W + C T E +++ + E PR S P LP P SR P
Sbjct: 160 EDAWAR--CEAREKTTE-VPTESGKYPCGESCPRPPETPVSRLRPQLP-KTPVSSRRPEP 215
Query: 68 PGSLAPAARANPERTRASRSRPEVPARHYQTRPQPRILADPTGPQEGAAHWGP 120
P + AP+ R P +TR S PE P +TR + DP P+ G +H P
Sbjct: 216 PKTRAPSLRPEPPKTRVSSLHPEPP----ETRAS-HLRVDP--PETGVSHLCP 261
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 35.8 bits (81), Expect = 0.020
Identities = 35/108 (32%), Positives = 41/108 (37%), Gaps = 13/108 (12%)
Query: 48 RSGSPALPLSAPCGSRGPWLPGSLAPAARANPERTRASRSRPEVPARHYQTRPQPRILAD 107
R P +AP G GP P + +PAA P RTR R E+ A P P
Sbjct: 709 RHDPPPRRPAAPPGPPGPAAPPAPSPAA---PVRTRRRRKLYELHAAGAPPPPPPGHAPA 765
Query: 108 PTGPQEGAAHWGPHGL---------AIGDRDRKVAPRGPYRPGTPTRA 146
P P+ G+ GL A G D PR P PG P A
Sbjct: 766 PESPRPGSGSGSGPGLAPARSPGPAADGPIDLSKKPRRPL-PGAPAPA 812
Score = 27.3 bits (59), Expect = 7.0
Identities = 32/112 (28%), Positives = 37/112 (33%), Gaps = 26/112 (23%)
Query: 61 GSRGPWLPGSLAPAARANPERT-------RASRSRPEVPARHY----QTRPQPRILADPT 109
GS G PGS A +P RT R SR + Y + P PR A P
Sbjct: 662 GSEGSQSPGSSVDDAEDDPSRTLCEACNIRFSRHETYTVHKRYYCASRHDPPPRRPAAPP 721
Query: 110 GPQEGAAHWGPHGLAIGDRDRKVAPRGPYRPGTPTRARKLQNVLSWNIPKRP 161
GP AA P P P R RKL + + P P
Sbjct: 722 GPPGPAAPPAP---------------SPAAPVRTRRRRKLYELHAAGAPPPP 758
>gi|239757987 PREDICTED: hypothetical protein [Homo sapiens]
Length = 445
Score = 35.0 bits (79), Expect = 0.034
Identities = 34/136 (25%), Positives = 46/136 (33%), Gaps = 27/136 (19%)
Query: 35 GFALLEGGPRRRRRSGSPALPLSAPCG-------------------------SRGPWLPG 69
G A+ G P+R +RSG P AP G +R P PG
Sbjct: 96 GLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRPGREDAAVRGRNRDPAEPG 155
Query: 70 SLAPAARANPERTRASRSRPEVPARHYQTRPQPRILADPTGPQEGAAHWGPHGLAIGDRD 129
SL P + P R + + P R + R +P+ +GP G H A +
Sbjct: 156 SLRPTSLGFPARAGQGQVQGAAPGR--RLRGEPKTPPGRSGPSGGVRSGAGHRAATAEHQ 213
Query: 130 RKVAPRGPYRPGTPTR 145
PG P R
Sbjct: 214 LGAGFSVRNGPGPPAR 229
>gi|239746104 PREDICTED: hypothetical protein XP_002344198 [Homo
sapiens]
Length = 398
Score = 35.0 bits (79), Expect = 0.034
Identities = 45/173 (26%), Positives = 57/173 (32%), Gaps = 33/173 (19%)
Query: 33 APGFALL---EGGPRRRRRSGSPALPLSAPCG-------------------------SRG 64
+PG L G P R +RSG P AP G +R
Sbjct: 44 SPGVTSLAVGPGNPTRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRQGREDAGVGRRNRD 103
Query: 65 PWLPGSLAPAARANPERTRASRSRPEVPARHYQTRPQPRILADPTGPQEGAAHWGPHGLA 124
P PGSL P + P R R + P R + R +P+ +GP G H A
Sbjct: 104 PAEPGSLRPTSLGFPARAGQGRVQGAAPGR--KLRGEPKTPPGRSGPSGGVRSGAGHRAA 161
Query: 125 IGDRDRKVAPRGPYRPGTPTRARKLQ--NVLSWNIPKRPYIYPRDFTVDLTRP 175
+ PG P R +L P RPY +PR T P
Sbjct: 162 AAEHQLGAGFSVRNGPGPPARLPPAPPGPLLRPARPPRPY-FPRPRTPPTCEP 213
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 34.7 bits (78), Expect = 0.044
Identities = 41/153 (26%), Positives = 56/153 (36%), Gaps = 26/153 (16%)
Query: 32 QAPGFALLEGGPR-----RRRRSGSPALPLSAPCGSRG-PWLP-GSLAPAARANPERTRA 84
+ P L GPR RRR + P ++P SR W P S P+ R++P
Sbjct: 730 EVPPDLLAFPGPRPSFRGSRRRGAAFGFPGASPRASRRRAWSPLASPQPSLRSSPGLGYC 789
Query: 85 SRSRPEVPARHYQTRP----------QPRILADPTGPQEGAAHWGPHGLAIGDRDRKVAP 134
S P P +T P +PR L + P+ A GP G + P
Sbjct: 790 SPLAPPSPQLSLRTGPFQPPFLPPARRPRSLQESPAPRRAAGRLGPPGSPL--------P 841
Query: 135 RGPYRPGTPTRARKLQNVLSWNIPKR-PYIYPR 166
P P P S N+P R P+ + R
Sbjct: 842 GSPRPPSPPLGLCHSPRRSSLNLPSRLPHTWRR 874
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 34.7 bits (78), Expect = 0.044
Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 15/119 (12%)
Query: 26 AEQARSQAPGFALLEGGPRRRRRSGSPALPLSAPCGSRGPWLPGSLAPAARANPERTRAS 85
A A QAP ++ P++ R + +P ++P P P + P+ + P T +
Sbjct: 901 ATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGP-ATPSP 959
Query: 86 RSRPEVPARHYQTRPQPRILADPTGPQEGAAHWGPHGLAIGDRDRKVAPRGPYRPGTPT 144
+ P PA A P P+ G A P G +P+G P TP+
Sbjct: 960 KWAPTPPA------------ATPPSPKGGPATPSPKGAPTPPAATPPSPKG--GPATPS 1004
Score = 32.0 bits (71), Expect = 0.28
Identities = 30/110 (27%), Positives = 42/110 (38%), Gaps = 9/110 (8%)
Query: 40 EGGPRRRRRSGSPALPLSAPCGSRGPWLPGSLAPAARANPERTR--ASRSRPEVPARHYQ 97
+GGP G+P P + P +G PG+ P P + + P +PA
Sbjct: 1298 KGGPATSPPKGAPTPPAATPPSPKGS--PGTPPPKGAPTPPAVTPPSPKGTPTLPATTPS 1355
Query: 98 TRPQPRILADPTGPQEGAA---HWGPHGLAIGDRDRKVAPRGPYRPGTPT 144
++ P + GP AA H G G A+ K P P G PT
Sbjct: 1356 SKGGPTTPSSKEGPTPPAATPSHKG--GPAMTPPSPKRGPAIPSPKGDPT 1403
Score = 30.4 bits (67), Expect = 0.83
Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 32 QAPGFALLEGGPRRRRRSGSPALPLSAPCGSRGPWLPGSLAPA-----ARANPERTRASR 86
+AP + +GGP G P LP P + P P +A + A A P A
Sbjct: 1445 KAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPT 1504
Query: 87 SRPEVPARHYQTRPQPRILADPTGP 111
+P+ + P DP P
Sbjct: 1505 LPAVIPSSPKEVPATPSSRRDPIAP 1529
Score = 28.5 bits (62), Expect = 3.1
Identities = 29/114 (25%), Positives = 41/114 (35%), Gaps = 17/114 (14%)
Query: 40 EGGPRRRRRSGSPALPLSAPCGSRGPWLPGSLAPAARANPERTRASRSRPE-----VPAR 94
+GGP G+P P + P +G G P+ + P A+ P+ P +
Sbjct: 1068 KGGPATPSLKGAPTPPAATPPSPKG----GPATPSPKGAPMPPAATPPSPKGGLATPPHK 1123
Query: 95 HYQTRPQPRILADPTGPQEGAAHWGPHGLAIGDRDRKVAPRG----PYRPGTPT 144
T P A P P+ G A P G +P+G P G PT
Sbjct: 1124 GAPTTP----AATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPT 1173
Score = 28.1 bits (61), Expect = 4.1
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 9/66 (13%)
Query: 50 GSPALPLSAPCGSRGPWLP----GSLAPAARANPERTRASRSRPEVPARHYQTRPQPRIL 105
G+P LP + P GP P G PA A P P P R P P+
Sbjct: 1345 GTPTLPATTPSSKGGPTTPSSKEGPTPPA--ATPSHKGGPAMTPPSPKRG-PAIPSPK-- 1399
Query: 106 ADPTGP 111
DPT P
Sbjct: 1400 GDPTSP 1405
>gi|239751624 PREDICTED: hypothetical protein XP_002347938 [Homo
sapiens]
Length = 244
Score = 34.3 bits (77), Expect = 0.057
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 67 LPGSLAPAARANPERTRASRSRPEVPARHYQTRPQPRILADPTGPQEGAAHWGP 120
L G +A A A+ A +RP RPQPR A P GP+ A WGP
Sbjct: 132 LVGRVAQAQLAHAHLQLAQPARP---------RPQPRTRAPPPGPRPTARTWGP 176
>gi|239746135 PREDICTED: hypothetical protein XP_002344205 [Homo
sapiens]
Length = 244
Score = 34.3 bits (77), Expect = 0.057
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 67 LPGSLAPAARANPERTRASRSRPEVPARHYQTRPQPRILADPTGPQEGAAHWGP 120
L G +A A A+ A +RP RPQPR A P GP+ A WGP
Sbjct: 132 LVGRVAQAQLAHAHLQLAQPARP---------RPQPRTRAPPPGPRPTARTWGP 176
>gi|239743660 PREDICTED: hypothetical protein XP_002342926 [Homo
sapiens]
Length = 329
Score = 34.3 bits (77), Expect = 0.057
Identities = 29/96 (30%), Positives = 36/96 (37%), Gaps = 6/96 (6%)
Query: 48 RSGSPALPLSAPCGSRGPWLPGSLAPAARANPERTRASRSRPEVPARHYQTRPQPRILAD 107
R+G +L ++A G W+ AP R P R+ A +TRP LA
Sbjct: 132 RNGKKSLRMAASGPESGLWVE---APGHRHRPRTPWPPRAGS---AGSCETRPNEAHLAP 185
Query: 108 PTGPQEGAAHWGPHGLAIGDRDRKVAPRGPYRPGTP 143
P G G H L R P GP GTP
Sbjct: 186 PRGRVAGLDHLPHQALKAPQSPRAFPPGGPGDAGTP 221
>gi|169210256 PREDICTED: hypothetical protein [Homo sapiens]
Length = 447
Score = 33.9 bits (76), Expect = 0.075
Identities = 31/83 (37%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 7 PKYNEDSWNKGVCRFLNLTAEQARSQAPGFALLEGGPRRRRRSGSPALPLSAPCGSRGPW 66
P+ ++ KG F AR+Q PG GP R P LP AP S G
Sbjct: 233 PRQESHNFAKGCAEFYG---SGARAQ-PGGPCWAQGPPGRLPDPIP-LPTRAPRTSAGLA 287
Query: 67 LPGSLAPAARANPERTRASRSRP 89
GS AP A P R RA RS P
Sbjct: 288 GVGSGAPGEPAEPGRARAPRSAP 310
>gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo
sapiens]
Length = 351
Score = 33.9 bits (76), Expect = 0.075
Identities = 33/97 (34%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 56 LSAPCGSRG--PWLPGSL-APAARANPERTRASRSRPEVPARHYQTRPQPRILADPTG-P 111
L P G G P P + APAAR +P+ R R P PA P +L DP G P
Sbjct: 149 LELPFGQAGGIPLYPRAAPAPAARPSPDPGR--RPPPAAPAPVVHVGPVLPLLHDPVGVP 206
Query: 112 QEGAAHWGPHGLAIGDRDRKVAPRGP-YRPGTPTRAR 147
H G +R R++ R +RP +P AR
Sbjct: 207 LAPLGHGGVDWAENKERPRRLRLRSQRFRPPSPGAAR 243
>gi|239757099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 33.5 bits (75), Expect = 0.098
Identities = 38/123 (30%), Positives = 46/123 (37%), Gaps = 30/123 (24%)
Query: 30 RSQAPGFALLEGGPRRRRRSGSPALPLSAPC-------GSRGPWLPGSLAPAARANPERT 82
R G L +G ++ +GSPA + A G RGP AP ARA+
Sbjct: 33 RQGTAGHDLRKGHRKQLEDTGSPAPTIRAHTRRKALGPGERGPEASPRPAPRARAH---- 88
Query: 83 RASRSRPEVPARHYQTRPQPRILADPTGPQEGAAH--WGPHGLAIGDRDRKVAPRGPYRP 140
+ SR R+ A PTGP E A W P L R R PR P
Sbjct: 89 --AHSR--------------RLPASPTGPPETRARLAWAPRFLPTNGR-RPSPPRPPMSA 131
Query: 141 GTP 143
TP
Sbjct: 132 PTP 134
>gi|169171690 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 33.5 bits (75), Expect = 0.098
Identities = 31/111 (27%), Positives = 41/111 (36%), Gaps = 16/111 (14%)
Query: 51 SPALPLSAPCGSRGPWLPGSLAPAARANPERTRASRSRPEVPARHYQTRPQPRILADPTG 110
+P+ PL+ P G ++PA P R +R P P P P G
Sbjct: 11 APSEPLTCPMG---------VSPAPWGRPLRRSRARPGPCPPEGLVPRAPPP-------G 54
Query: 111 PQEGAAHWGPHGLAIGDRDRKVAPRGPYRPGTPTRARKLQNVLSWNIPKRP 161
P+ AA R PR P RP P A + + L N P+RP
Sbjct: 55 PRPTAAATRATFRVPERRTVPPCPRRPARPSQPPSAARRERALLANPPQRP 105
>gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo
sapiens]
Length = 208
Score = 33.5 bits (75), Expect = 0.098
Identities = 38/123 (30%), Positives = 46/123 (37%), Gaps = 30/123 (24%)
Query: 30 RSQAPGFALLEGGPRRRRRSGSPALPLSAPC-------GSRGPWLPGSLAPAARANPERT 82
R G L +G ++ +GSPA + A G RGP AP ARA+
Sbjct: 33 RQGTAGHDLRKGHRKQLEDTGSPAPTIRAHTRRKALGPGERGPEASPRPAPRARAH---- 88
Query: 83 RASRSRPEVPARHYQTRPQPRILADPTGPQEGAAH--WGPHGLAIGDRDRKVAPRGPYRP 140
+ SR R+ A PTGP E A W P L R R PR P
Sbjct: 89 --AHSR--------------RLPASPTGPPETRARLAWAPRFLPTNGR-RPSPPRPPMSA 131
Query: 141 GTP 143
TP
Sbjct: 132 PTP 134
>gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 33.5 bits (75), Expect = 0.098
Identities = 38/125 (30%), Positives = 53/125 (42%), Gaps = 15/125 (12%)
Query: 20 RFLNLTAEQARSQAPGFALLEGGPRRRRRSGSPALPLSAPCGSRG-PWLPGSLAPAARAN 78
R L A Q R ++PG +GG G A PL RG P +P AP+
Sbjct: 68 RLSALAAAQPRRRSPG---PQGGG-----GGDIASPLPPALQPRGAPAVPA--APSPGPL 117
Query: 79 PERTRASRSRPEVPARHYQTRPQPRILADPTGPQEGAAHWGPHGLAIGDRDRKVAPRGPY 138
P R + RP +P+ ++ P LA P P A P G ++ R+++ PR
Sbjct: 118 PARPSSPPPRPSLPSGPHRPVLPPSALAAPRPP---LARPLPQG-SVTAREQEQRPRSRR 173
Query: 139 RPGTP 143
R G P
Sbjct: 174 RAGAP 178
>gi|169171833 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 33.5 bits (75), Expect = 0.098
Identities = 31/111 (27%), Positives = 41/111 (36%), Gaps = 16/111 (14%)
Query: 51 SPALPLSAPCGSRGPWLPGSLAPAARANPERTRASRSRPEVPARHYQTRPQPRILADPTG 110
+P+ PL+ P G ++PA P R +R P P P P G
Sbjct: 11 APSEPLTCPMG---------VSPAPWGRPLRRSRARPGPCPPEGLVPRAPPP-------G 54
Query: 111 PQEGAAHWGPHGLAIGDRDRKVAPRGPYRPGTPTRARKLQNVLSWNIPKRP 161
P+ AA R PR P RP P A + + L N P+RP
Sbjct: 55 PRPTAAATRATFRVPERRTVPPCPRRPARPSQPPSAARRERALLANPPQRP 105
>gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo
sapiens]
Length = 208
Score = 33.5 bits (75), Expect = 0.098
Identities = 38/123 (30%), Positives = 46/123 (37%), Gaps = 30/123 (24%)
Query: 30 RSQAPGFALLEGGPRRRRRSGSPALPLSAPC-------GSRGPWLPGSLAPAARANPERT 82
R G L +G ++ +GSPA + A G RGP AP ARA+
Sbjct: 33 RQGTAGHDLRKGHRKQLEDTGSPAPTIRAHTRRKALGPGERGPEASPRPAPRARAH---- 88
Query: 83 RASRSRPEVPARHYQTRPQPRILADPTGPQEGAAH--WGPHGLAIGDRDRKVAPRGPYRP 140
+ SR R+ A PTGP E A W P L R R PR P
Sbjct: 89 --AHSR--------------RLPASPTGPPETRARLAWAPRFLPTNGR-RPSPPRPPMSA 131
Query: 141 GTP 143
TP
Sbjct: 132 PTP 134
>gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 33.5 bits (75), Expect = 0.098
Identities = 38/125 (30%), Positives = 53/125 (42%), Gaps = 15/125 (12%)
Query: 20 RFLNLTAEQARSQAPGFALLEGGPRRRRRSGSPALPLSAPCGSRG-PWLPGSLAPAARAN 78
R L A Q R ++PG +GG G A PL RG P +P AP+
Sbjct: 68 RLSALAAAQPRRRSPG---PQGGG-----GGDIASPLPPALQPRGAPAVPA--APSPGPL 117
Query: 79 PERTRASRSRPEVPARHYQTRPQPRILADPTGPQEGAAHWGPHGLAIGDRDRKVAPRGPY 138
P R + RP +P+ ++ P LA P P A P G ++ R+++ PR
Sbjct: 118 PARPSSPPPRPSLPSGPHRPVLPPSALAAPRPP---LARPLPQG-SVTAREQEQRPRSRR 173
Query: 139 RPGTP 143
R G P
Sbjct: 174 RAGAP 178
>gi|169171083 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 33.5 bits (75), Expect = 0.098
Identities = 31/111 (27%), Positives = 41/111 (36%), Gaps = 16/111 (14%)
Query: 51 SPALPLSAPCGSRGPWLPGSLAPAARANPERTRASRSRPEVPARHYQTRPQPRILADPTG 110
+P+ PL+ P G ++PA P R +R P P P P G
Sbjct: 11 APSEPLTCPMG---------VSPAPWGRPLRRSRARPGPCPPEGLVPRAPPP-------G 54
Query: 111 PQEGAAHWGPHGLAIGDRDRKVAPRGPYRPGTPTRARKLQNVLSWNIPKRP 161
P+ AA R PR P RP P A + + L N P+RP
Sbjct: 55 PRPTAAATRATFRVPERRTVPPCPRRPARPSQPPSAARRERALLANPPQRP 105
>gi|239508966 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 33.5 bits (75), Expect = 0.098
Identities = 31/111 (27%), Positives = 41/111 (36%), Gaps = 16/111 (14%)
Query: 51 SPALPLSAPCGSRGPWLPGSLAPAARANPERTRASRSRPEVPARHYQTRPQPRILADPTG 110
+P+ PL+ P G ++PA P R +R P P P P G
Sbjct: 11 APSEPLTCPMG---------VSPAPWGRPLRRSRARPGPCPPEGLVPRAPPP-------G 54
Query: 111 PQEGAAHWGPHGLAIGDRDRKVAPRGPYRPGTPTRARKLQNVLSWNIPKRP 161
P+ AA R PR P RP P A + + L N P+RP
Sbjct: 55 PRPTAAATRATFRVPERRTVPPCPRRPARPSQPPSAARRERALLANPPQRP 105
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.136 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,215,846
Number of Sequences: 37866
Number of extensions: 556151
Number of successful extensions: 2848
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 319
Number of HSP's that attempted gapping in prelim test: 2594
Number of HSP's gapped (non-prelim): 570
length of query: 176
length of database: 18,247,518
effective HSP length: 95
effective length of query: 81
effective length of database: 14,650,248
effective search space: 1186670088
effective search space used: 1186670088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.