Guide to the Human Genome
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Name: LOC100132701 Sequence: fasta or formatted (176aa) NCBI GI: 169181246
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {176aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         18           2
 C cysteine            1.1          2           1
 D aspartate           3.4          6           1
 E glutamate           4.5          8           1
 F phenylalanine       1.7          3           1
 G glycine             8.5         15           2
 H histidine           1.7          3           1
 I isoleucine          2.3          4           1
 K lysine              2.8          5           1
 L leucine             8.0         14           2
 M methionine          0.6          1           1
 N asparagine          3.4          6           1
 P proline            14.2         25           1
 Q glutamine           3.4          6           1
 R arginine           14.8         26           5
 S serine              5.7         10           1
 T threonine           5.1          9           1
 V valine              3.4          6           1
 W tryptophan          2.3          4           1
 Y tyrosine            2.8          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100132701          1.000   PREDICTED: hypothetical protein 
COL5A2                0.043   alpha 2 type V collagen preproprotein 
C2orf55               0.043   hypothetical protein LOC343990 
TTBK1                 0.040   tau tubulin kinase 1 
COL12A1               0.037   collagen, type XII, alpha 1 short isoform precursor ...
COL12A1               0.037   collagen, type XII, alpha 1 long isoform precursor [...
LOC100291828          0.034   PREDICTED: hypothetical protein XP_002344932 
LOC100288926          0.034   PREDICTED: hypothetical protein XP_002343509 
COL4A2                0.034   alpha 2 type IV collagen preproprotein 
FAM47B                0.034   hypothetical protein LOC170062 
ZFPM1                 0.032   zinc finger protein, multitype 1 
LOC100292184          0.029   PREDICTED: hypothetical protein 
LOC100287920          0.029   PREDICTED: hypothetical protein XP_002344198 
MYO15A                0.029   myosin XV 
NACA                  0.029   nascent polypeptide-associated complex alpha subuni...
LOC100290893          0.026   PREDICTED: hypothetical protein XP_002347938 
LOC100288361          0.026   PREDICTED: hypothetical protein XP_002344205 
LOC100287297          0.026   PREDICTED: hypothetical protein XP_002342926 
LOC100127930          0.026   PREDICTED: hypothetical protein 
LOC100286967          0.026   PREDICTED: hypothetical protein XP_002342247 
LOC100292801          0.023   PREDICTED: hypothetical protein 
LOC100131225          0.023   PREDICTED: hypothetical protein 
LOC100290691          0.023   PREDICTED: hypothetical protein XP_002347934 
LOC100131102          0.023   PREDICTED: hypothetical protein 
LOC100131225          0.023   PREDICTED: hypothetical protein 
LOC100288156          0.023   PREDICTED: hypothetical protein XP_002344202 
LOC100131102          0.023   PREDICTED: hypothetical protein 
LOC100131225          0.023   PREDICTED: hypothetical protein 
LOC100131225          0.023   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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