Guide to the Human Genome
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Name: TACC1 Sequence: fasta or formatted (395aa) NCBI GI: 170763519
Description:

transforming, acidic coiled-coil containing protein 1 isoform 2

Referenced in:

Coiled-Coil Proteins

Other entries for this name:
alt prot [805aa] transforming, acidic coiled-coil containing protein 1 isoform 1
alt prot [610aa] transforming, acidic coiled-coil containing protein 1 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         38           2
 C cysteine            2.3          9           1
 D aspartate           4.8         19           1
 E glutamate          15.2         60           3
 F phenylalanine       1.8          7           1
 G glycine             5.6         22           2
 H histidine           1.3          5           1
 I isoleucine          4.8         19           2
 K lysine              9.4         37           3
 L leucine             8.1         32           2
 M methionine          1.8          7           1
 N asparagine          2.3          9           1
 P proline             2.0          8           1
 Q glutamine           5.8         23           2
 R arginine            4.1         16           2
 S serine              9.1         36           3
 T threonine           4.8         19           1
 V valine              4.6         18           1
 W tryptophan          1.3          5           1
 Y tyrosine            1.5          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transforming, acidic coiled-coil containing protein... 
TACC1                 0.853   transforming, acidic coiled-coil containing protein...
TACC1                 0.853   transforming, acidic coiled-coil containing protein...
TACC2                 0.364   transforming, acidic coiled-coil containing protein...
TACC2                 0.364   transforming, acidic coiled-coil containing protein ...
TACC2                 0.364   transforming, acidic coiled-coil containing protein ...
TACC2                 0.364   transforming, acidic coiled-coil containing protein ...
TACC3                 0.246   transforming, acidic coiled-coil containing protein 3...
SMC1A                 0.041   structural maintenance of chromosomes 1A 
MYH6                  0.040   myosin heavy chain 6 
CENPE                 0.040   centromere protein E 
CGNL1                 0.040   cingulin-like 1 
EEA1                  0.039   early endosome antigen 1, 162kD 
LZTS2                 0.039   leucine zipper, putative tumor suppressor 2 
CEP164                0.037   centrosomal protein 164kDa 
RAI14                 0.037   retinoic acid induced 14 isoform d 
RAI14                 0.037   retinoic acid induced 14 isoform c 
RAI14                 0.037   retinoic acid induced 14 isoform b 
RAI14                 0.037   retinoic acid induced 14 isoform a 
RAI14                 0.037   retinoic acid induced 14 isoform a 
RAI14                 0.037   retinoic acid induced 14 isoform a 
GOLGA4                0.036   golgi autoantigen, golgin subfamily a, 4 
LOC100133758          0.035   PREDICTED: hypothetical protein, partial 
FILIP1                0.035   filamin A interacting protein 1 
SLMAP                 0.035   sarcolemma associated protein 
DSP                   0.035   desmoplakin isoform I 
ANKRD20A2             0.033   ankyrin repeat domain 20 family, member A2 
ANKRD20A1             0.033   ankyrin repeat domain 20 family, member A1 
EIF3A                 0.033   eukaryotic translation initiation factor 3, subunit 1...
ANKRD20A3             0.033   ankyrin repeat domain 20 family, member A3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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